Wall clock time and date at job start Tue Mar 31 2020 13:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35616 * 116.99726 * 2 1 4 4 C 1.38508 * 120.08417 * 0.02562 * 3 2 1 5 5 C 1.38037 * 120.31060 * 179.97438 * 4 3 2 6 6 C 1.39963 * 120.46253 * 359.97438 * 5 4 3 7 7 C 1.48325 * 119.91856 * 180.02562 * 6 5 4 8 8 C 1.39583 * 120.10313 * 245.27589 * 7 6 5 9 9 F 1.35102 * 120.01753 * 359.97438 * 8 7 6 10 10 C 1.38196 * 119.96370 * 180.22694 * 8 7 6 11 11 C 1.38481 * 120.17163 * 359.47540 * 10 8 7 12 12 F 1.35104 * 119.90026 * 180.27221 * 11 10 8 13 13 C 1.38874 * 120.20162 * 0.29778 * 11 10 8 14 14 O 1.36060 * 119.98720 * 179.97438 * 13 11 10 15 15 C 1.38618 * 120.03481 * 359.95560 * 13 11 10 16 16 F 1.35107 * 120.08507 * 180.02562 * 15 13 11 17 17 C 1.38623 * 120.15964 * 0.30116 * 6 5 4 18 18 C 1.40525 * 119.68633 * 359.43674 * 17 6 5 19 19 C 1.41173 * 120.22856 * 180.29548 * 18 17 6 20 20 H 1.08000 * 120.00157 * 204.84120 * 19 18 17 21 21 C 1.39903 * 120.00231 * 24.84032 * 19 18 17 22 22 N 1.30885 * 119.99669 * 17.62591 * 21 19 18 23 23 Si 1.86793 * 120.00111 * 197.63214 * 21 19 18 24 24 H 1.48501 * 109.47076 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47140 * 119.99669 * 23 21 19 26 26 H 1.48504 * 109.47218 * 239.99598 * 23 21 19 27 27 H 1.08999 * 109.47192 * 299.99436 * 1 2 3 28 28 H 1.09002 * 109.47383 * 59.99373 * 1 2 3 29 29 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.84307 * 0.02562 * 4 3 2 31 31 H 1.07987 * 119.76452 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.91287 * 179.74722 * 10 8 7 33 33 H 0.96694 * 114.00365 * 89.99192 * 14 13 11 34 34 H 1.07997 * 120.15758 * 179.70312 * 17 6 5 35 35 H 0.97004 * 119.99772 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2919 2.3711 0.0005 5 6 1.9137 3.6035 0.0011 6 6 3.3104 3.6936 0.0016 7 6 3.9659 5.0242 0.0028 8 6 4.7287 5.4297 -1.0936 9 9 4.8716 4.6100 -2.1579 10 6 5.3420 6.6681 -1.0875 11 6 5.1931 7.5132 -0.0006 12 9 5.7906 8.7249 -0.0027 13 6 4.4318 7.1188 1.0919 14 8 4.2889 7.9523 2.1577 15 6 3.8172 5.8763 1.0970 16 9 3.0760 5.4917 2.1591 17 6 4.0826 2.5424 -0.0047 18 6 3.4564 1.2844 0.0004 19 6 4.2317 0.1046 0.0004 20 1 3.8176 -0.8137 -0.3890 21 6 5.5365 0.1249 0.5047 22 7 5.9241 1.1075 1.2776 23 14 6.7255 -1.2501 0.0750 24 1 6.0472 -2.2334 -0.8072 25 1 7.9041 -0.6836 -0.6288 26 1 7.1705 -1.9269 1.3197 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2134 2.3131 0.0014 31 1 1.3182 4.5044 0.0019 32 1 5.9355 6.9795 -1.9345 33 1 3.5292 8.5470 2.0928 34 1 5.1603 2.6120 -0.0091 35 1 6.8287 1.1215 1.6276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235995521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:32 Heat of formation + Delta-G solvation = -166.062134 kcal Electronic energy + Delta-G solvation = -27044.030407 eV Core-core repulsion = 22558.209491 eV Total energy + Delta-G solvation = -4485.820916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.07090 -48.73230 -48.70905 -39.23959 -38.67106 -37.02237 -35.89961 -33.78998 -31.33562 -29.88628 -29.50600 -27.78077 -26.51453 -25.21495 -23.19270 -22.87458 -21.11303 -20.33030 -18.61146 -18.29201 -17.91810 -17.42947 -16.59893 -16.40690 -15.83474 -15.72889 -15.38637 -15.31051 -15.15349 -14.94622 -14.72772 -14.54599 -14.42494 -14.25278 -13.32260 -13.15055 -12.83869 -12.76999 -12.52401 -12.21354 -11.77646 -11.57151 -11.32247 -11.22452 -11.16392 -10.91183 -10.82186 -10.49028 -10.03959 -9.99590 -9.62438 -9.23573 -8.72839 -8.50331 -7.62096 -7.07086 -6.76645 -4.31410 0.76477 0.83876 2.54760 2.73776 3.08677 3.10125 3.15247 3.19631 3.49389 3.93719 3.95690 4.31233 4.33053 4.40487 4.48054 4.77160 4.88459 5.42921 5.52651 5.68257 5.71113 5.76792 5.81346 5.87484 5.94706 5.96366 6.09113 6.17829 6.58969 6.72446 6.99242 7.14830 7.22475 7.38230 7.53001 7.56423 7.79466 8.04758 8.28281 8.59783 8.76304 8.95421 10.15654 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004726 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.050110 B = 5922.831373 C = 7077.243865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.026 3.974 4 C -0.177 4.177 5 C -0.181 4.181 6 C -0.085 4.085 7 C -0.066 4.066 8 C 0.159 3.841 9 F -0.111 7.111 10 C -0.190 4.190 11 C 0.117 3.883 12 F -0.123 7.123 13 C 0.024 3.976 14 O -0.474 6.474 15 C 0.141 3.859 16 F -0.107 7.107 17 C -0.111 4.111 18 C 0.095 3.905 19 C -0.442 4.442 20 H 0.085 0.915 21 C 0.072 3.928 22 N -0.794 5.794 23 Si 0.909 3.091 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.274 1.274 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.390 0.610 34 H 0.129 0.871 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 9.529 -2.699 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C -0.019 4.019 4 C -0.196 4.196 5 C -0.200 4.200 6 C -0.085 4.085 7 C -0.068 4.068 8 C 0.139 3.861 9 F -0.089 7.089 10 C -0.210 4.210 11 C 0.097 3.903 12 F -0.101 7.101 13 C -0.023 4.023 14 O -0.283 6.283 15 C 0.121 3.879 16 F -0.085 7.085 17 C -0.131 4.131 18 C 0.093 3.907 19 C -0.471 4.471 20 H 0.104 0.896 21 C -0.145 4.145 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.200 1.200 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.174 0.826 33 H 0.245 0.755 34 H 0.146 0.854 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.348 9.123 -2.337 9.705 hybrid contribution -0.121 -0.028 -0.136 0.184 sum -2.468 9.095 -2.473 9.743 Atomic orbital electron populations 1.22762 0.81547 1.01896 1.00028 1.85969 1.18389 1.28154 1.89922 1.19333 0.92349 0.82687 1.07497 1.20499 0.97572 0.92501 1.09066 1.19976 0.92142 0.95604 1.12326 1.17948 0.93025 0.88927 1.08596 1.19094 0.99407 0.96451 0.91870 1.16978 0.96894 0.87798 0.84473 1.91586 1.93548 1.71089 1.52686 1.20852 1.05778 0.93932 1.00439 1.17131 0.97325 0.82148 0.93675 1.91518 1.81234 1.40773 1.96606 1.18096 1.03343 0.91466 0.89421 1.84967 1.52594 1.51941 1.38766 1.17413 0.93316 0.92247 0.84960 1.91567 1.73295 1.90814 1.52814 1.21097 0.99308 0.89286 1.03366 1.16927 0.87356 0.93741 0.92722 1.19451 0.96470 0.96503 1.34670 0.89650 1.25919 0.98912 0.97013 0.92642 1.69833 1.19102 1.30714 1.22351 0.86233 0.79908 0.81179 0.79320 1.18261 1.19687 1.19979 0.94017 0.94117 0.89908 0.88095 0.89007 0.82614 0.75473 0.85366 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -7.02 9.76 -18.55 -0.18 -7.20 16 3 C 0.03 0.63 6.72 -38.29 -0.26 0.38 16 4 C -0.18 -3.87 9.01 -39.56 -0.36 -4.23 16 5 C -0.18 -3.91 9.55 -39.01 -0.37 -4.28 16 6 C -0.08 -1.90 4.70 -104.96 -0.49 -2.40 16 7 C -0.07 -1.26 5.31 -104.78 -0.56 -1.82 16 8 C 0.16 2.69 7.23 -39.10 -0.28 2.41 16 9 F -0.11 -2.02 16.65 2.25 0.04 -1.99 16 10 C -0.19 -2.62 9.98 -39.51 -0.39 -3.01 16 11 C 0.12 1.64 7.31 -39.26 -0.29 1.35 16 12 F -0.12 -1.63 17.10 2.25 0.04 -1.59 16 13 C 0.02 0.36 6.71 -39.21 -0.26 0.10 16 14 O -0.47 -6.29 13.22 -19.93 -0.26 -6.56 16 15 C 0.14 2.49 7.24 -38.98 -0.28 2.21 16 16 F -0.11 -2.04 16.51 2.25 0.04 -2.00 16 17 C -0.11 -2.80 8.16 -38.58 -0.31 -3.12 16 18 C 0.10 2.52 5.58 -106.72 -0.60 1.92 16 19 C -0.44 -11.72 8.71 -37.84 -0.33 -12.05 16 20 H 0.09 2.25 7.64 -52.49 -0.40 1.85 16 21 C 0.07 1.81 5.14 -17.33 -0.09 1.72 16 22 N -0.79 -20.40 10.97 55.55 0.61 -19.79 16 23 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.39 3.09 9.06 45.56 0.41 3.50 16 34 H 0.13 3.38 6.17 -52.49 -0.32 3.05 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -29.39 323.29 -5.60 -34.99 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -1.84 Total: 4.82 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.88 Total: -19.28 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.61 Total: -19.79 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.44 Total: -13.76 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.11 Total: -5.58 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.39 -5.60 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235995521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.073 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds