Wall clock time and date at job start Tue Mar 31 2020 13:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35616 * 116.99726 * 2 1 4 4 C 1.38508 * 120.08417 * 0.02562 * 3 2 1 5 5 C 1.38037 * 120.31060 * 179.97438 * 4 3 2 6 6 C 1.39963 * 120.46253 * 359.97438 * 5 4 3 7 7 C 1.48325 * 119.91856 * 180.02562 * 6 5 4 8 8 C 1.39583 * 120.10313 * 245.27589 * 7 6 5 9 9 F 1.35102 * 120.01753 * 359.97438 * 8 7 6 10 10 C 1.38196 * 119.96370 * 180.22694 * 8 7 6 11 11 C 1.38481 * 120.17163 * 359.47540 * 10 8 7 12 12 F 1.35104 * 119.90026 * 180.27221 * 11 10 8 13 13 C 1.38874 * 120.20162 * 0.29778 * 11 10 8 14 14 O 1.36060 * 119.98720 * 179.97438 * 13 11 10 15 15 C 1.38618 * 120.03481 * 359.95560 * 13 11 10 16 16 F 1.35107 * 120.08507 * 180.02562 * 15 13 11 17 17 C 1.38623 * 120.15964 * 0.30116 * 6 5 4 18 18 C 1.40525 * 119.68633 * 359.43674 * 17 6 5 19 19 C 1.41173 * 120.22856 * 180.29548 * 18 17 6 20 20 H 1.08000 * 120.00157 * 204.84120 * 19 18 17 21 21 C 1.39903 * 120.00231 * 24.84032 * 19 18 17 22 22 N 1.30885 * 119.99669 * 17.62591 * 21 19 18 23 23 Si 1.86793 * 120.00111 * 197.63214 * 21 19 18 24 24 H 1.48501 * 109.47076 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47140 * 119.99669 * 23 21 19 26 26 H 1.48504 * 109.47218 * 239.99598 * 23 21 19 27 27 H 1.08999 * 109.47192 * 299.99436 * 1 2 3 28 28 H 1.09002 * 109.47383 * 59.99373 * 1 2 3 29 29 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.84307 * 0.02562 * 4 3 2 31 31 H 1.07987 * 119.76452 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.91287 * 179.74722 * 10 8 7 33 33 H 0.96694 * 114.00365 * 89.99192 * 14 13 11 34 34 H 1.07997 * 120.15758 * 179.70312 * 17 6 5 35 35 H 0.97004 * 119.99772 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2919 2.3711 0.0005 5 6 1.9137 3.6035 0.0011 6 6 3.3104 3.6936 0.0016 7 6 3.9659 5.0242 0.0028 8 6 4.7287 5.4297 -1.0936 9 9 4.8716 4.6100 -2.1579 10 6 5.3420 6.6681 -1.0875 11 6 5.1931 7.5132 -0.0006 12 9 5.7906 8.7249 -0.0027 13 6 4.4318 7.1188 1.0919 14 8 4.2889 7.9523 2.1577 15 6 3.8172 5.8763 1.0970 16 9 3.0760 5.4917 2.1591 17 6 4.0826 2.5424 -0.0047 18 6 3.4564 1.2844 0.0004 19 6 4.2317 0.1046 0.0004 20 1 3.8176 -0.8137 -0.3890 21 6 5.5365 0.1249 0.5047 22 7 5.9241 1.1075 1.2776 23 14 6.7255 -1.2501 0.0750 24 1 6.0472 -2.2334 -0.8072 25 1 7.9041 -0.6836 -0.6288 26 1 7.1705 -1.9269 1.3197 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2134 2.3131 0.0014 31 1 1.3182 4.5044 0.0019 32 1 5.9355 6.9795 -1.9345 33 1 3.5292 8.5470 2.0928 34 1 5.1603 2.6120 -0.0091 35 1 6.8287 1.1215 1.6276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235995521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:32 Heat of formation + Delta-G solvation = -183.750552 kcal Electronic energy + Delta-G solvation = -27044.797435 eV Core-core repulsion = 22558.209491 eV Total energy + Delta-G solvation = -4486.587944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.18570 -50.11648 -50.08083 -40.66161 -40.18191 -38.39239 -37.40513 -35.59338 -32.82744 -31.67642 -30.77473 -29.29529 -28.01405 -27.01175 -24.53439 -24.16791 -22.89963 -21.91514 -19.89740 -19.57714 -19.25115 -19.05850 -18.31962 -17.71204 -17.19159 -17.11633 -16.86082 -16.68520 -16.48865 -16.33764 -16.27267 -16.13921 -15.71280 -15.52252 -14.95719 -14.57618 -14.46598 -14.27200 -13.92411 -13.63069 -13.44873 -13.21143 -12.85376 -12.74138 -12.64499 -12.46214 -12.18748 -12.08020 -11.72635 -11.59879 -11.33888 -11.06382 -10.02164 -9.79015 -9.47107 -8.83763 -8.58210 -6.25366 -0.49444 -0.40977 0.81714 0.94157 1.37782 1.46410 1.53257 1.88957 2.22082 2.26461 2.63836 2.83653 2.87601 3.06775 3.10726 3.44770 3.49824 3.74042 4.25658 4.31630 4.38693 4.43362 4.49394 4.53108 4.56763 4.66690 4.70038 4.74997 4.94000 5.15414 5.31888 5.36610 5.42470 5.74637 5.76284 5.97555 6.22815 6.41944 6.50137 6.74024 6.87926 7.16933 8.34078 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004726 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.050110 B = 5922.831373 C = 7077.243865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.013 3.987 4 C -0.179 4.179 5 C -0.176 4.176 6 C -0.086 4.086 7 C -0.092 4.092 8 C 0.145 3.855 9 F -0.124 7.124 10 C -0.163 4.163 11 C 0.131 3.869 12 F -0.112 7.112 13 C 0.044 3.956 14 O -0.480 6.480 15 C 0.125 3.875 16 F -0.122 7.122 17 C -0.131 4.131 18 C 0.057 3.943 19 C -0.480 4.480 20 H 0.072 0.928 21 C 0.034 3.966 22 N -0.828 5.828 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.262 1.262 26 H -0.266 1.266 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.191 0.809 33 H 0.416 0.584 34 H 0.108 0.892 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 11.381 -3.098 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.032 4.032 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.087 4.087 7 C -0.094 4.094 8 C 0.126 3.874 9 F -0.102 7.102 10 C -0.182 4.182 11 C 0.110 3.890 12 F -0.090 7.090 13 C -0.004 4.004 14 O -0.293 6.293 15 C 0.104 3.896 16 F -0.100 7.100 17 C -0.151 4.151 18 C 0.054 3.946 19 C -0.509 4.509 20 H 0.090 0.910 21 C -0.180 4.180 22 N -0.455 5.455 23 Si 0.799 3.201 24 H -0.183 1.183 25 H -0.187 1.187 26 H -0.191 1.191 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.209 0.791 33 H 0.276 0.724 34 H 0.126 0.874 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.613 11.004 -2.734 11.636 hybrid contribution -0.210 -0.401 0.019 0.453 sum -2.824 10.603 -2.715 11.303 Atomic orbital electron populations 1.23126 0.78390 1.04362 1.01152 1.85916 1.21720 1.27751 1.89889 1.19504 0.92178 0.84106 1.07363 1.20867 0.99233 0.91733 1.07944 1.20422 0.92233 0.96656 1.10246 1.18208 0.93599 0.89950 1.06928 1.19020 1.01196 0.95539 0.93684 1.17087 0.97604 0.88873 0.83879 1.91553 1.93741 1.71777 1.53153 1.21063 1.04028 0.91951 1.01168 1.17020 0.96516 0.82316 0.93098 1.91560 1.80889 1.40060 1.96495 1.17985 1.02050 0.90654 0.89671 1.84906 1.54131 1.52056 1.38208 1.17491 0.94437 0.93207 0.84433 1.91522 1.73879 1.91151 1.53429 1.20979 0.98615 0.90240 1.05276 1.17342 0.88981 0.94313 0.93923 1.19540 0.98094 0.96361 1.36923 0.90979 1.26690 0.99913 0.99449 0.91933 1.69891 1.19746 1.32528 1.23313 0.85208 0.77587 0.78071 0.79188 1.18338 1.18693 1.19081 0.93009 0.92600 0.86987 0.84774 0.86257 0.79149 0.72402 0.87432 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.81 113.37 1.11 1.89 16 2 O -0.34 -15.56 9.76 -89.28 -0.87 -16.43 16 3 C 0.01 0.67 6.72 23.11 0.16 0.82 16 4 C -0.18 -7.74 9.01 22.29 0.20 -7.54 16 5 C -0.18 -7.54 9.55 22.64 0.22 -7.32 16 6 C -0.09 -3.98 4.70 -20.08 -0.09 -4.07 16 7 C -0.09 -3.53 5.31 -19.97 -0.11 -3.63 16 8 C 0.15 4.82 7.23 22.58 0.16 4.98 16 9 F -0.12 -4.54 16.65 44.97 0.75 -3.80 16 10 C -0.16 -4.01 9.98 22.32 0.22 -3.79 16 11 C 0.13 3.22 7.31 22.48 0.16 3.38 16 12 F -0.11 -2.52 17.10 44.97 0.77 -1.75 16 13 C 0.04 1.21 6.71 22.51 0.15 1.36 16 14 O -0.48 -11.36 13.22 -94.23 -1.25 -12.60 16 15 C 0.12 4.29 7.24 22.66 0.16 4.45 16 16 F -0.12 -4.60 16.51 44.97 0.74 -3.86 16 17 C -0.13 -6.97 8.16 22.92 0.19 -6.79 16 18 C 0.06 3.16 5.58 -21.23 -0.12 3.04 16 19 C -0.48 -26.94 8.71 23.39 0.20 -26.74 16 20 H 0.07 4.06 7.64 -2.91 -0.02 4.03 16 21 C 0.03 1.77 5.14 85.24 0.44 2.21 16 22 N -0.83 -44.53 10.97 21.82 0.24 -44.29 16 23 Si 0.98 39.80 29.59 68.60 2.03 41.83 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 27 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 28 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.13 4.76 6.27 -2.91 -0.02 4.74 16 31 H 0.12 4.38 8.06 -2.92 -0.02 4.35 16 32 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 33 H 0.42 5.18 9.06 -74.06 -0.67 4.50 16 34 H 0.11 6.04 6.17 -2.91 -0.02 6.03 16 35 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -67.38 323.29 5.99 -61.39 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.52 Total: 17.25 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 3.06 Total: -37.74 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.24 Total: -44.29 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -2.12 Total: -29.04 kcal Atomic # 9 Polarization: -11.66 SS G_CDS: 2.26 Total: -9.40 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -67.38 5.99 -61.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235995521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.360 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds