Wall clock time and date at job start Tue Mar 31 2020 13:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35885 * 116.99603 * 2 1 4 4 C 1.39516 * 119.77500 * 0.02562 * 3 2 1 5 5 C 1.37876 * 120.63257 * 179.97438 * 4 3 2 6 6 C 1.39276 * 120.15779 * 0.04090 * 5 4 3 7 7 C 1.47684 * 120.23107 * 179.97438 * 6 5 4 8 8 C 1.39983 * 120.13696 * 89.99842 * 7 6 5 9 9 F 1.35107 * 120.03642 * 359.97438 * 8 7 6 10 10 C 1.38078 * 119.93140 * 179.97438 * 8 7 6 11 11 C 1.38579 * 120.20021 * 359.97438 * 10 8 7 12 12 F 1.35103 * 119.86245 * 180.02562 * 11 10 8 13 13 C 1.38984 * 120.27379 * 0.02562 * 11 10 8 14 14 O 1.36058 * 119.96691 * 180.02562 * 13 11 10 15 15 C 1.38497 * 120.07030 * 359.74392 * 13 11 10 16 16 F 1.35096 * 120.10637 * 180.27275 * 15 13 11 17 17 C 1.41962 * 119.53719 * 0.25187 * 6 5 4 18 18 C 1.40838 * 120.30440 * 179.70853 * 17 6 5 19 19 H 1.08008 * 120.00179 * 329.77645 * 18 17 6 20 20 C 1.40001 * 120.00348 * 149.77339 * 18 17 6 21 21 N 1.30813 * 120.00323 * 161.90819 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 341.91109 * 20 18 17 23 23 H 1.48495 * 109.47322 * 95.40046 * 22 20 18 24 24 H 1.48501 * 109.47061 * 215.40368 * 22 20 18 25 25 H 1.48504 * 109.47085 * 335.40124 * 22 20 18 26 26 C 1.37880 * 119.76806 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47560 * 59.98890 * 1 2 3 28 28 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46968 * 299.99308 * 1 2 3 30 30 H 1.07998 * 119.68266 * 0.02562 * 4 3 2 31 31 H 1.07992 * 119.92426 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.90188 * 179.97438 * 10 8 7 33 33 H 0.96702 * 113.99709 * 90.00174 * 14 13 11 34 34 H 0.96999 * 120.00458 * 180.02562 * 21 20 18 35 35 H 1.07999 * 120.08371 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2813 2.3778 0.0005 5 6 1.8887 3.6156 0.0011 6 6 3.2780 3.7132 0.0002 7 6 3.9303 5.0382 0.0002 8 6 4.2415 5.6683 1.2109 9 9 3.9449 5.0653 2.3829 10 6 4.8518 6.9069 1.2059 11 6 5.1581 7.5283 0.0057 12 9 5.7557 8.7400 0.0088 13 6 4.8529 6.9103 -1.2012 14 8 5.1568 7.5258 -2.3759 15 6 4.2450 5.6659 -1.2094 16 9 3.9531 5.0620 -2.3821 17 6 4.0627 2.5302 -0.0066 18 6 5.4688 2.6101 -0.0138 19 1 5.9597 3.4488 -0.4852 20 6 6.2304 1.6025 0.5903 21 7 7.4979 1.4737 0.2935 22 14 5.4365 0.4420 1.8200 23 1 5.0101 -0.7992 1.1253 24 1 6.4156 0.1026 2.8837 25 1 4.2526 1.1002 2.4288 26 6 3.4230 1.2775 -0.0005 27 1 -0.3634 0.5140 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2034 2.3110 0.0014 31 1 1.2858 4.5115 0.0019 32 1 5.0913 7.3929 2.1403 33 1 6.0368 7.3126 -2.7154 34 1 8.0255 0.7754 0.7117 35 1 4.0089 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235996126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:35 Heat of formation + Delta-G solvation = -169.128647 kcal Electronic energy + Delta-G solvation = -27472.186519 eV Core-core repulsion = 22986.232629 eV Total energy + Delta-G solvation = -4485.953890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.91576 -48.55798 -48.53549 -39.26918 -38.81754 -37.13699 -36.01379 -33.69562 -31.33997 -30.65838 -29.35938 -28.32301 -26.49899 -25.18931 -23.06042 -22.72281 -21.59916 -20.26329 -18.44020 -18.12419 -17.92709 -17.73545 -16.69609 -16.29752 -15.75552 -15.66482 -15.43741 -15.22296 -15.12359 -14.96221 -14.87779 -14.77056 -14.42539 -14.21559 -13.46235 -13.29028 -13.01694 -12.61830 -12.54949 -12.31045 -12.15644 -11.85498 -11.33176 -11.28310 -11.07957 -10.95350 -10.81119 -10.52128 -10.16433 -10.13593 -9.77564 -9.28715 -8.52913 -8.24175 -7.86448 -7.27719 -7.13346 -4.73552 0.97221 1.04454 2.35408 2.49967 3.08972 3.14936 3.27558 3.29035 3.69090 3.90067 3.97882 4.12722 4.30441 4.48973 4.51434 4.88795 5.05598 5.23793 5.44180 5.52259 5.68390 5.71481 5.76554 5.86736 5.98503 6.04066 6.13838 6.17436 6.40968 6.52843 6.77019 6.88469 6.98933 7.31543 7.39831 7.44916 7.54567 7.72379 8.03285 8.26884 8.45222 8.58720 9.86481 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.005489 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.248419 B = 5099.870327 C = 5981.176765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.168 3.832 4 C -0.321 4.321 5 C -0.014 4.014 6 C -0.213 4.213 7 C -0.035 4.035 8 C 0.162 3.838 9 F -0.114 7.114 10 C -0.192 4.192 11 C 0.116 3.884 12 F -0.125 7.125 13 C 0.022 3.978 14 O -0.478 6.478 15 C 0.139 3.861 16 F -0.110 7.110 17 C 0.145 3.855 18 C -0.433 4.433 19 H 0.093 0.907 20 C 0.088 3.912 21 N -0.791 5.791 22 Si 0.909 3.091 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.241 1.241 26 C -0.264 4.264 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.391 0.609 34 H 0.289 0.711 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 5.732 0.861 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.124 3.876 4 C -0.341 4.341 5 C -0.032 4.032 6 C -0.215 4.215 7 C -0.037 4.037 8 C 0.142 3.858 9 F -0.092 7.092 10 C -0.212 4.212 11 C 0.095 3.905 12 F -0.103 7.103 13 C -0.025 4.025 14 O -0.287 6.287 15 C 0.118 3.882 16 F -0.088 7.088 17 C 0.141 3.859 18 C -0.460 4.460 19 H 0.111 0.889 20 C -0.133 4.133 21 N -0.413 5.413 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.163 1.163 26 C -0.284 4.284 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.442 5.701 0.908 7.933 hybrid contribution 0.180 -0.604 0.363 0.728 sum -5.261 5.096 1.271 7.435 Atomic orbital electron populations 1.22851 0.79941 1.02397 1.00974 1.86013 1.20282 1.28805 1.89223 1.18857 0.91942 0.82886 0.93940 1.20323 0.97786 0.91990 1.23953 1.20352 0.92711 0.95794 0.94329 1.17972 0.92148 0.89280 1.22070 1.18663 0.99981 0.95756 0.89291 1.17101 0.97118 0.90135 0.81440 1.91548 1.90499 1.82873 1.44275 1.20809 1.05807 0.96182 0.98425 1.17164 0.98309 0.82657 0.92333 1.91503 1.80940 1.40666 1.97239 1.18087 1.06313 0.92409 0.85732 1.84915 1.39381 1.69496 1.34902 1.17619 0.99136 0.89414 0.82005 1.91538 1.90521 1.82561 1.44138 1.17228 0.92936 0.88831 0.86867 1.19364 0.89402 1.06765 1.30422 0.88922 1.26223 0.94669 0.96226 0.96226 1.69669 1.08302 1.28879 1.34495 0.86318 0.79989 0.80426 0.79797 1.19106 1.21569 1.16343 1.20214 0.90600 0.97702 1.19862 0.93186 0.89493 0.93247 0.87649 0.88207 0.82890 0.75298 0.90003 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.80 101.05 0.99 1.47 16 2 O -0.33 -6.59 10.48 -19.38 -0.20 -6.79 16 3 C 0.17 3.73 6.67 -39.24 -0.26 3.47 16 4 C -0.32 -6.50 9.02 -39.24 -0.35 -6.86 16 5 C -0.01 -0.28 9.75 -39.33 -0.38 -0.66 16 6 C -0.21 -4.76 4.65 -104.23 -0.48 -5.24 16 7 C -0.03 -0.69 4.10 -104.78 -0.43 -1.12 16 8 C 0.16 2.94 7.28 -38.99 -0.28 2.65 16 9 F -0.11 -2.18 16.83 2.25 0.04 -2.14 16 10 C -0.19 -2.92 9.98 -39.51 -0.39 -3.31 16 11 C 0.12 1.78 7.31 -39.18 -0.29 1.49 16 12 F -0.13 -1.83 17.10 2.25 0.04 -1.79 16 13 C 0.02 0.35 6.71 -39.21 -0.26 0.09 16 14 O -0.48 -6.98 13.22 -19.93 -0.26 -7.24 16 15 C 0.14 2.61 7.28 -38.88 -0.28 2.32 16 16 F -0.11 -2.20 16.67 2.25 0.04 -2.16 16 17 C 0.14 3.57 5.12 -106.57 -0.55 3.02 16 18 C -0.43 -11.12 8.93 -37.94 -0.34 -11.46 16 19 H 0.09 2.48 7.54 -52.48 -0.40 2.08 16 20 C 0.09 2.23 5.40 -17.32 -0.09 2.14 16 21 N -0.79 -20.09 13.93 55.55 0.77 -19.32 16 22 Si 0.91 20.60 24.52 -169.99 -4.17 16.43 16 23 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.24 -5.65 6.86 56.52 0.39 -5.26 16 26 C -0.26 -6.42 7.08 -38.80 -0.27 -6.69 16 27 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.65 7.64 -51.93 -0.40 0.26 16 30 H 0.11 1.82 6.25 -52.49 -0.33 1.49 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.39 3.97 9.07 45.56 0.41 4.39 16 34 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.11 2.77 4.74 -52.49 -0.25 2.52 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -28.46 317.96 -4.43 -32.89 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -1.79 Total: 4.01 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.69 Total: -18.69 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: 0.77 Total: -19.32 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.47 Total: -14.03 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.46 -4.43 -32.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235996126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.235 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds