Wall clock time and date at job start Tue Mar 31 2020 13:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35885 * 116.99603 * 2 1 4 4 C 1.39516 * 119.77500 * 0.02562 * 3 2 1 5 5 C 1.37876 * 120.63257 * 179.97438 * 4 3 2 6 6 C 1.39276 * 120.15779 * 0.04090 * 5 4 3 7 7 C 1.47684 * 120.23107 * 179.97438 * 6 5 4 8 8 C 1.39983 * 120.13696 * 89.99842 * 7 6 5 9 9 F 1.35107 * 120.03642 * 359.97438 * 8 7 6 10 10 C 1.38078 * 119.93140 * 179.97438 * 8 7 6 11 11 C 1.38579 * 120.20021 * 359.97438 * 10 8 7 12 12 F 1.35103 * 119.86245 * 180.02562 * 11 10 8 13 13 C 1.38984 * 120.27379 * 0.02562 * 11 10 8 14 14 O 1.36058 * 119.96691 * 180.02562 * 13 11 10 15 15 C 1.38497 * 120.07030 * 359.74392 * 13 11 10 16 16 F 1.35096 * 120.10637 * 180.27275 * 15 13 11 17 17 C 1.41962 * 119.53719 * 0.25187 * 6 5 4 18 18 C 1.40838 * 120.30440 * 179.70853 * 17 6 5 19 19 H 1.08008 * 120.00179 * 329.77645 * 18 17 6 20 20 C 1.40001 * 120.00348 * 149.77339 * 18 17 6 21 21 N 1.30813 * 120.00323 * 161.90819 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 341.91109 * 20 18 17 23 23 H 1.48495 * 109.47322 * 95.40046 * 22 20 18 24 24 H 1.48501 * 109.47061 * 215.40368 * 22 20 18 25 25 H 1.48504 * 109.47085 * 335.40124 * 22 20 18 26 26 C 1.37880 * 119.76806 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47560 * 59.98890 * 1 2 3 28 28 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46968 * 299.99308 * 1 2 3 30 30 H 1.07998 * 119.68266 * 0.02562 * 4 3 2 31 31 H 1.07992 * 119.92426 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.90188 * 179.97438 * 10 8 7 33 33 H 0.96702 * 113.99709 * 90.00174 * 14 13 11 34 34 H 0.96999 * 120.00458 * 180.02562 * 21 20 18 35 35 H 1.07999 * 120.08371 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2813 2.3778 0.0005 5 6 1.8887 3.6156 0.0011 6 6 3.2780 3.7132 0.0002 7 6 3.9303 5.0382 0.0002 8 6 4.2415 5.6683 1.2109 9 9 3.9449 5.0653 2.3829 10 6 4.8518 6.9069 1.2059 11 6 5.1581 7.5283 0.0057 12 9 5.7557 8.7400 0.0088 13 6 4.8529 6.9103 -1.2012 14 8 5.1568 7.5258 -2.3759 15 6 4.2450 5.6659 -1.2094 16 9 3.9531 5.0620 -2.3821 17 6 4.0627 2.5302 -0.0066 18 6 5.4688 2.6101 -0.0138 19 1 5.9597 3.4488 -0.4852 20 6 6.2304 1.6025 0.5903 21 7 7.4979 1.4737 0.2935 22 14 5.4365 0.4420 1.8200 23 1 5.0101 -0.7992 1.1253 24 1 6.4156 0.1026 2.8837 25 1 4.2526 1.1002 2.4288 26 6 3.4230 1.2775 -0.0005 27 1 -0.3634 0.5140 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2034 2.3110 0.0014 31 1 1.2858 4.5115 0.0019 32 1 5.0913 7.3929 2.1403 33 1 6.0368 7.3126 -2.7154 34 1 8.0255 0.7754 0.7117 35 1 4.0089 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235996126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:34 Heat of formation + Delta-G solvation = -187.093699 kcal Electronic energy + Delta-G solvation = -27472.965542 eV Core-core repulsion = 22986.232629 eV Total energy + Delta-G solvation = -4486.732914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.13614 -50.03679 -49.97314 -40.82780 -40.17303 -38.61115 -37.41848 -35.50858 -32.81638 -32.42217 -30.71530 -29.76688 -27.86832 -26.89520 -24.50116 -24.08178 -23.30372 -21.83473 -19.76460 -19.66043 -19.45563 -19.09837 -18.39091 -17.66469 -17.22564 -17.05586 -16.91438 -16.60666 -16.58492 -16.45333 -16.33995 -16.31886 -15.79876 -15.48465 -15.15780 -14.93862 -14.39508 -14.18198 -14.05163 -13.89683 -13.69216 -13.31294 -12.88153 -12.76510 -12.71471 -12.43582 -12.31152 -12.02006 -11.78523 -11.73744 -11.49887 -11.06956 -9.88020 -9.66351 -9.59597 -9.01220 -8.93357 -6.62041 -0.36494 -0.29925 0.62884 0.74149 1.25180 1.34190 1.44256 1.94654 2.07828 2.36306 2.47657 2.58121 2.89370 3.16299 3.18118 3.30684 3.60313 3.80871 4.10072 4.33435 4.41538 4.45135 4.45444 4.52614 4.65166 4.70451 4.73865 4.76459 4.79204 4.82644 5.16503 5.20971 5.42168 5.62639 5.71889 5.73365 5.99280 6.14252 6.48082 6.52534 6.72110 6.76628 8.05829 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.005489 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.248419 B = 5099.870327 C = 5981.176765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.163 3.837 4 C -0.306 4.306 5 C -0.021 4.021 6 C -0.216 4.216 7 C -0.057 4.057 8 C 0.147 3.853 9 F -0.124 7.124 10 C -0.168 4.168 11 C 0.124 3.876 12 F -0.115 7.115 13 C 0.036 3.964 14 O -0.481 6.481 15 C 0.119 3.881 16 F -0.124 7.124 17 C 0.129 3.871 18 C -0.459 4.459 19 H 0.068 0.932 20 C 0.061 3.939 21 N -0.827 5.827 22 Si 0.953 3.047 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.291 4.291 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.188 0.812 33 H 0.412 0.588 34 H 0.297 0.703 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 6.893 1.506 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C 0.118 3.882 4 C -0.325 4.325 5 C -0.039 4.039 6 C -0.218 4.218 7 C -0.059 4.059 8 C 0.127 3.873 9 F -0.102 7.102 10 C -0.188 4.188 11 C 0.104 3.896 12 F -0.093 7.093 13 C -0.011 4.011 14 O -0.294 6.294 15 C 0.099 3.901 16 F -0.103 7.103 17 C 0.126 3.874 18 C -0.487 4.487 19 H 0.086 0.914 20 C -0.157 4.157 21 N -0.452 5.452 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.311 4.311 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.205 0.795 33 H 0.272 0.728 34 H 0.108 0.892 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.318 6.857 1.544 10.146 hybrid contribution 0.539 -0.867 0.074 1.024 sum -6.778 5.990 1.618 9.189 Atomic orbital electron populations 1.23278 0.76731 1.05085 1.02164 1.85992 1.23559 1.27808 1.88831 1.18961 0.91570 0.84433 0.93257 1.20776 0.99608 0.91086 1.21016 1.20785 0.92416 0.97263 0.93457 1.18309 0.93114 0.89806 1.20548 1.18692 1.01387 0.95323 0.90540 1.17190 0.98336 0.91202 0.80558 1.91519 1.90786 1.83281 1.44594 1.21039 1.03282 0.94653 0.99791 1.17075 0.97815 0.82785 0.91921 1.91539 1.80639 1.39976 1.97163 1.18037 1.05017 0.91347 0.86742 1.84857 1.41153 1.69041 1.34330 1.17722 1.00683 0.90495 0.81249 1.91490 1.90913 1.83046 1.44811 1.17415 0.92826 0.90018 0.87162 1.19258 0.90203 1.06791 1.32468 0.91378 1.26668 0.94959 0.97048 0.97022 1.69678 1.09036 1.30329 1.36117 0.85656 0.78982 0.78936 0.78682 1.19306 1.19812 1.18012 1.20280 0.92032 0.97180 1.21638 0.91893 0.86338 0.91949 0.83968 0.85176 0.79472 0.72837 0.89230 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.80 113.37 1.11 1.65 16 2 O -0.35 -13.34 10.48 -92.25 -0.97 -14.31 16 3 C 0.16 7.07 6.67 22.49 0.15 7.22 16 4 C -0.31 -11.65 9.02 22.49 0.20 -11.45 16 5 C -0.02 -0.83 9.75 22.43 0.22 -0.61 16 6 C -0.22 -9.68 4.65 -19.61 -0.09 -9.78 16 7 C -0.06 -2.29 4.10 -19.97 -0.08 -2.37 16 8 C 0.15 5.21 7.28 22.65 0.16 5.37 16 9 F -0.12 -4.66 16.83 44.97 0.76 -3.90 16 10 C -0.17 -4.70 9.98 22.31 0.22 -4.48 16 11 C 0.12 3.52 7.31 22.53 0.16 3.69 16 12 F -0.11 -2.99 17.10 44.97 0.77 -2.23 16 13 C 0.04 1.13 6.71 22.51 0.15 1.28 16 14 O -0.48 -13.20 13.22 -94.21 -1.25 -14.45 16 15 C 0.12 4.45 7.28 22.73 0.17 4.62 16 16 F -0.12 -5.06 16.67 44.97 0.75 -4.31 16 17 C 0.13 6.52 5.12 -21.13 -0.11 6.41 16 18 C -0.46 -24.75 8.93 23.33 0.21 -24.54 16 19 H 0.07 3.88 7.54 -2.91 -0.02 3.86 16 20 C 0.06 3.20 5.40 85.27 0.46 3.66 16 21 N -0.83 -43.69 13.93 21.84 0.30 -43.38 16 22 Si 0.95 43.70 24.52 68.60 1.68 45.38 16 23 H -0.27 -12.13 6.71 99.48 0.67 -11.46 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.26 -12.23 6.86 99.48 0.68 -11.55 16 26 C -0.29 -14.43 7.08 22.78 0.16 -14.27 16 27 H 0.06 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.41 7.64 -2.39 -0.02 1.40 16 30 H 0.14 4.31 6.25 -2.91 -0.02 4.29 16 31 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.19 3.90 8.06 -2.91 -0.02 3.87 16 33 H 0.41 7.65 9.07 -74.06 -0.67 6.98 16 34 H 0.30 14.13 8.30 -92.71 -0.77 13.36 16 35 H 0.10 5.02 4.74 -2.91 -0.01 5.01 16 Total: -1.00 -63.58 317.96 5.61 -57.97 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.46 Total: 12.84 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.10 Total: -33.60 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.30 Total: -43.38 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -2.21 Total: -28.76 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 2.28 Total: -10.44 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.68 Total: 45.38 kcal Total: -63.58 5.61 -57.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235996126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.121 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds