Wall clock time and date at job start Tue Mar 31 2020 13:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35621 * 117.00115 * 2 1 4 4 C 1.39121 * 119.88445 * 0.02562 * 3 2 1 5 5 C 1.36426 * 120.44037 * 179.71656 * 4 3 2 6 6 C 1.40921 * 120.18724 * 0.51925 * 5 4 3 7 7 C 1.41240 * 120.12031 * 179.76091 * 6 5 4 8 8 H 1.08001 * 119.99418 * 334.27674 * 7 6 5 9 9 C 1.39848 * 120.00016 * 154.27323 * 7 6 5 10 10 N 1.30893 * 120.00110 * 343.03950 * 9 7 6 11 11 Si 1.86799 * 119.99782 * 163.03500 * 9 7 6 12 12 H 1.48499 * 109.47016 * 60.00335 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47398 * 299.99891 * 11 9 7 15 15 C 1.40615 * 119.76128 * 359.48610 * 6 5 4 16 16 C 1.38595 * 119.57198 * 0.25023 * 15 6 5 17 17 C 1.48289 * 120.09748 * 179.97438 * 16 15 6 18 18 C 1.39603 * 120.10012 * 90.00479 * 17 16 15 19 19 F 1.35095 * 120.01185 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.96398 * 180.02562 * 18 17 16 21 21 C 1.38492 * 120.17342 * 359.97438 * 20 18 17 22 22 F 1.35096 * 119.89818 * 180.02562 * 21 20 18 23 23 C 1.38884 * 120.20347 * 0.02562 * 21 20 18 24 24 O 1.36055 * 119.98419 * 179.97438 * 23 21 20 25 25 C 1.38619 * 120.02996 * 359.67969 * 23 21 20 26 26 F 1.35099 * 120.08401 * 180.29469 * 25 23 21 27 27 H 1.08998 * 109.47658 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47282 * 300.00598 * 1 2 3 29 29 H 1.08997 * 109.47036 * 59.99912 * 1 2 3 30 30 H 1.07995 * 119.77970 * 359.96139 * 4 3 2 31 31 H 1.07998 * 119.91158 * 180.26050 * 5 4 3 32 32 H 0.97008 * 120.00215 * 179.97438 * 10 9 7 33 33 H 1.07996 * 120.21457 * 180.22645 * 15 6 5 34 34 H 1.07998 * 119.91493 * 180.02562 * 20 18 17 35 35 H 0.96702 * 114.00251 * 89.99731 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2847 2.3736 0.0005 5 6 1.8922 3.5951 0.0064 6 6 3.2984 3.6871 0.0009 7 6 3.9259 4.9525 0.0018 8 1 3.4092 5.8117 -0.3997 9 6 5.2162 5.0928 0.5226 10 7 5.7140 4.1625 1.2973 11 14 6.2292 6.6077 0.1127 12 1 5.5174 7.8221 0.5858 13 1 7.5512 6.5155 0.7830 14 1 6.4248 6.6896 -1.3570 15 6 4.0746 2.5146 0.0003 16 6 3.4471 1.2789 -0.0001 17 6 4.2543 0.0350 -0.0013 18 6 4.6360 -0.5531 1.2059 19 9 4.2696 0.0105 2.3777 20 6 5.3886 -1.7120 1.2015 21 6 5.7654 -2.2928 0.0020 22 9 6.5008 -3.4261 0.0042 23 6 5.3896 -1.7137 -1.2031 24 8 5.7627 -2.2877 -2.3789 25 6 4.6294 -0.5546 -1.2086 26 9 4.2582 0.0063 -2.3802 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2066 2.3108 0.0003 31 1 1.2939 4.4942 0.0110 32 1 6.6092 4.2596 1.6583 33 1 5.1528 2.5766 -0.0002 34 1 5.6831 -2.1665 2.1359 35 1 5.1297 -2.9349 -2.7189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235998364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:12 Heat of formation + Delta-G solvation = -166.143911 kcal Electronic energy + Delta-G solvation = -27448.479015 eV Core-core repulsion = 22962.654552 eV Total energy + Delta-G solvation = -4485.824463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.02015 -48.67892 -48.61551 -39.30509 -38.69129 -36.80018 -36.26333 -33.47269 -31.86207 -29.50215 -29.21471 -28.19128 -26.92347 -24.74078 -23.31980 -22.85297 -20.91740 -20.51672 -18.62042 -18.24510 -17.86118 -17.29702 -16.96292 -16.32196 -15.78908 -15.58940 -15.42336 -15.25636 -15.12377 -14.95031 -14.86309 -14.64578 -14.36017 -14.12734 -13.31723 -13.17845 -12.92300 -12.78530 -12.40010 -12.10469 -11.97892 -11.56565 -11.31124 -11.24920 -11.10245 -10.91897 -10.81753 -10.72437 -10.10981 -9.95726 -9.61600 -9.11188 -8.65113 -8.39362 -7.75383 -7.15913 -6.79068 -4.34807 0.86330 0.93053 2.51838 2.75287 3.06241 3.07631 3.14576 3.20017 3.55770 3.91183 4.02532 4.18479 4.38065 4.40816 4.45803 4.81066 4.95854 5.44401 5.55557 5.57582 5.62893 5.73173 5.80366 5.86224 5.98747 6.01832 6.04219 6.35164 6.68750 6.82720 6.92949 7.06481 7.23559 7.32124 7.43876 7.60561 7.81668 8.03035 8.30396 8.49262 8.79528 8.83184 10.15979 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.005247 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.143066 B = 5335.083141 C = 6428.179988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.330 6.330 3 C 0.020 3.980 4 C -0.167 4.167 5 C -0.180 4.180 6 C 0.088 3.912 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.797 5.797 11 Si 0.908 3.092 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.264 1.264 15 C -0.102 4.102 16 C -0.078 4.078 17 C -0.060 4.060 18 C 0.170 3.830 19 F -0.110 7.110 20 C -0.193 4.193 21 C 0.120 3.880 22 F -0.123 7.123 23 C 0.020 3.980 24 O -0.474 6.474 25 C 0.146 3.854 26 F -0.109 7.109 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.282 0.718 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -10.620 -1.583 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.245 6.245 3 C -0.023 4.023 4 C -0.186 4.186 5 C -0.200 4.200 6 C 0.085 3.915 7 C -0.491 4.491 8 H 0.097 0.903 9 C -0.142 4.142 10 N -0.423 5.423 11 Si 0.733 3.267 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.188 1.188 15 C -0.121 4.121 16 C -0.079 4.079 17 C -0.063 4.063 18 C 0.150 3.850 19 F -0.088 7.088 20 C -0.213 4.213 21 C 0.100 3.900 22 F -0.102 7.102 23 C -0.027 4.027 24 O -0.283 6.283 25 C 0.125 3.875 26 F -0.087 7.087 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.464 -10.491 -1.383 10.682 hybrid contribution -0.184 0.527 -0.103 0.568 sum -1.648 -9.963 -1.486 10.207 Atomic orbital electron populations 1.22734 0.80675 1.01887 1.00494 1.85820 1.19384 1.28366 1.90912 1.18403 0.90243 0.83266 1.10423 1.20334 0.97545 0.92664 1.08060 1.20689 0.94835 0.95236 1.09198 1.17461 0.90559 0.93163 0.90288 1.19405 0.99043 0.94969 1.35699 0.90302 1.25870 0.97887 0.97896 0.92590 1.69802 1.16690 1.33574 1.22205 0.86363 0.78794 0.81655 0.79931 1.19019 1.20312 1.18813 1.21254 0.99977 0.88915 1.01942 1.17380 0.88652 0.90686 1.11209 1.18850 1.00214 0.97341 0.89853 1.16969 0.95461 0.91179 0.81377 1.91584 1.89113 1.83946 1.44118 1.20835 1.04155 0.97754 0.98575 1.17125 0.95826 0.84715 0.92307 1.91511 1.74149 1.47279 1.97231 1.18055 1.03408 0.95430 0.85778 1.84959 1.48744 1.59898 1.34712 1.17422 0.95967 0.92294 0.81781 1.91549 1.89033 1.83899 1.44195 0.89930 0.93722 0.93780 0.88093 0.88268 0.90685 0.85277 0.82658 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.51 9.93 -18.56 -0.18 -6.70 16 3 C 0.02 0.45 6.72 -38.43 -0.26 0.19 16 4 C -0.17 -3.62 8.95 -39.91 -0.36 -3.98 16 5 C -0.18 -4.23 9.72 -39.22 -0.38 -4.61 16 6 C 0.09 2.26 5.56 -106.84 -0.59 1.67 16 7 C -0.46 -11.86 9.04 -37.84 -0.34 -12.20 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 9 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 10 N -0.80 -20.23 10.96 55.54 0.61 -19.62 16 11 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 14 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 15 C -0.10 -2.58 8.40 -38.55 -0.32 -2.90 16 16 C -0.08 -1.82 4.59 -104.81 -0.48 -2.30 16 17 C -0.06 -1.22 4.83 -104.79 -0.51 -1.73 16 18 C 0.17 3.11 7.27 -39.09 -0.28 2.82 16 19 F -0.11 -2.17 16.82 2.25 0.04 -2.14 16 20 C -0.19 -2.86 9.98 -39.51 -0.39 -3.25 16 21 C 0.12 1.77 7.31 -39.25 -0.29 1.49 16 22 F -0.12 -1.71 17.10 2.25 0.04 -1.67 16 23 C 0.02 0.32 6.71 -39.20 -0.26 0.06 16 24 O -0.47 -6.54 13.22 -19.91 -0.26 -6.80 16 25 C 0.15 2.69 7.28 -38.97 -0.28 2.41 16 26 F -0.11 -2.13 16.66 2.25 0.04 -2.10 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 30 H 0.10 1.87 6.25 -52.49 -0.33 1.54 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 33 H 0.13 3.42 6.19 -52.49 -0.32 3.09 16 34 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.39 3.34 9.07 45.56 0.41 3.76 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -28.84 324.17 -5.58 -34.42 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -1.85 Total: 5.33 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -3.86 Total: -19.03 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.45 Total: -13.50 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.84 -5.58 -34.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235998364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.725 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds