Wall clock time and date at job start Tue Mar 31 2020 13:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35621 * 117.00115 * 2 1 4 4 C 1.39121 * 119.88445 * 0.02562 * 3 2 1 5 5 C 1.36426 * 120.44037 * 179.71656 * 4 3 2 6 6 C 1.40921 * 120.18724 * 0.51925 * 5 4 3 7 7 C 1.41240 * 120.12031 * 179.76091 * 6 5 4 8 8 H 1.08001 * 119.99418 * 334.27674 * 7 6 5 9 9 C 1.39848 * 120.00016 * 154.27323 * 7 6 5 10 10 N 1.30893 * 120.00110 * 343.03950 * 9 7 6 11 11 Si 1.86799 * 119.99782 * 163.03500 * 9 7 6 12 12 H 1.48499 * 109.47016 * 60.00335 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47398 * 299.99891 * 11 9 7 15 15 C 1.40615 * 119.76128 * 359.48610 * 6 5 4 16 16 C 1.38595 * 119.57198 * 0.25023 * 15 6 5 17 17 C 1.48289 * 120.09748 * 179.97438 * 16 15 6 18 18 C 1.39603 * 120.10012 * 90.00479 * 17 16 15 19 19 F 1.35095 * 120.01185 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.96398 * 180.02562 * 18 17 16 21 21 C 1.38492 * 120.17342 * 359.97438 * 20 18 17 22 22 F 1.35096 * 119.89818 * 180.02562 * 21 20 18 23 23 C 1.38884 * 120.20347 * 0.02562 * 21 20 18 24 24 O 1.36055 * 119.98419 * 179.97438 * 23 21 20 25 25 C 1.38619 * 120.02996 * 359.67969 * 23 21 20 26 26 F 1.35099 * 120.08401 * 180.29469 * 25 23 21 27 27 H 1.08998 * 109.47658 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47282 * 300.00598 * 1 2 3 29 29 H 1.08997 * 109.47036 * 59.99912 * 1 2 3 30 30 H 1.07995 * 119.77970 * 359.96139 * 4 3 2 31 31 H 1.07998 * 119.91158 * 180.26050 * 5 4 3 32 32 H 0.97008 * 120.00215 * 179.97438 * 10 9 7 33 33 H 1.07996 * 120.21457 * 180.22645 * 15 6 5 34 34 H 1.07998 * 119.91493 * 180.02562 * 20 18 17 35 35 H 0.96702 * 114.00251 * 89.99731 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2847 2.3736 0.0005 5 6 1.8922 3.5951 0.0064 6 6 3.2984 3.6871 0.0009 7 6 3.9259 4.9525 0.0018 8 1 3.4092 5.8117 -0.3997 9 6 5.2162 5.0928 0.5226 10 7 5.7140 4.1625 1.2973 11 14 6.2292 6.6077 0.1127 12 1 5.5174 7.8221 0.5858 13 1 7.5512 6.5155 0.7830 14 1 6.4248 6.6896 -1.3570 15 6 4.0746 2.5146 0.0003 16 6 3.4471 1.2789 -0.0001 17 6 4.2543 0.0350 -0.0013 18 6 4.6360 -0.5531 1.2059 19 9 4.2696 0.0105 2.3777 20 6 5.3886 -1.7120 1.2015 21 6 5.7654 -2.2928 0.0020 22 9 6.5008 -3.4261 0.0042 23 6 5.3896 -1.7137 -1.2031 24 8 5.7627 -2.2877 -2.3789 25 6 4.6294 -0.5546 -1.2086 26 9 4.2582 0.0063 -2.3802 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2066 2.3108 0.0003 31 1 1.2939 4.4942 0.0110 32 1 6.6092 4.2596 1.6583 33 1 5.1528 2.5766 -0.0002 34 1 5.6831 -2.1665 2.1359 35 1 5.1297 -2.9349 -2.7189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235998364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:12 Heat of formation + Delta-G solvation = -183.139103 kcal Electronic energy + Delta-G solvation = -27449.215981 eV Core-core repulsion = 22962.654552 eV Total energy + Delta-G solvation = -4486.561429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.19120 -50.13121 -50.07266 -40.80940 -40.08571 -38.26047 -37.73501 -35.25536 -33.41509 -31.02195 -30.83429 -29.66294 -28.34207 -26.48551 -24.76137 -24.18069 -22.63950 -22.14628 -19.95017 -19.59438 -19.19815 -18.98646 -18.57351 -17.66665 -17.15058 -17.09926 -16.93799 -16.72512 -16.48378 -16.36816 -16.29504 -16.12601 -15.69979 -15.51917 -14.95963 -14.76445 -14.38963 -14.22665 -13.86932 -13.72104 -13.50427 -13.13195 -12.85740 -12.80906 -12.62695 -12.40492 -12.33354 -12.07199 -11.78916 -11.63078 -11.32194 -10.90490 -9.98186 -9.73757 -9.54081 -8.96108 -8.60311 -6.25585 -0.44896 -0.38950 0.73405 0.96394 1.38765 1.48728 1.51855 1.88455 2.21575 2.25730 2.63465 2.73805 2.83876 3.07585 3.10530 3.42038 3.52444 3.75122 4.22008 4.27322 4.40277 4.44792 4.48019 4.54472 4.63813 4.67238 4.73297 4.77932 5.00518 5.12819 5.24305 5.37900 5.44789 5.53233 5.79333 5.97469 6.17837 6.48926 6.51044 6.74058 6.92526 7.01508 8.35988 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.005247 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.143066 B = 5335.083141 C = 6428.179988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.024 3.976 4 C -0.168 4.168 5 C -0.191 4.191 6 C 0.055 3.945 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.830 5.830 11 Si 0.978 3.022 12 H -0.258 1.258 13 H -0.270 1.270 14 H -0.263 1.263 15 C -0.125 4.125 16 C -0.086 4.086 17 C -0.086 4.086 18 C 0.150 3.850 19 F -0.126 7.126 20 C -0.166 4.166 21 C 0.133 3.867 22 F -0.111 7.111 23 C 0.042 3.958 24 O -0.479 6.479 25 C 0.126 3.874 26 F -0.123 7.123 27 H 0.117 0.883 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.287 0.713 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 -12.437 -1.691 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C -0.020 4.020 4 C -0.187 4.187 5 C -0.211 4.211 6 C 0.053 3.947 7 C -0.527 4.527 8 H 0.097 0.903 9 C -0.179 4.179 10 N -0.456 5.456 11 Si 0.799 3.201 12 H -0.182 1.182 13 H -0.194 1.194 14 H -0.187 1.187 15 C -0.145 4.145 16 C -0.086 4.086 17 C -0.088 4.088 18 C 0.130 3.870 19 F -0.104 7.104 20 C -0.185 4.185 21 C 0.113 3.887 22 F -0.089 7.089 23 C -0.005 4.005 24 O -0.292 6.292 25 C 0.106 3.894 26 F -0.101 7.101 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.208 0.792 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -1.639 -12.343 -1.503 12.541 hybrid contribution -0.260 0.842 -0.120 0.889 sum -1.899 -11.501 -1.623 11.769 Atomic orbital electron populations 1.23125 0.77862 1.04592 1.01260 1.85814 1.22224 1.26916 1.90524 1.18606 0.90376 0.84432 1.08615 1.20676 0.99341 0.91807 1.06846 1.20915 0.94267 0.96630 1.09240 1.17825 0.91883 0.93621 0.91380 1.19656 1.00493 0.95187 1.37376 0.90303 1.26678 0.98472 1.00891 0.91893 1.69882 1.17166 1.35459 1.23130 0.85313 0.77316 0.77983 0.79509 1.18178 1.19440 1.18726 1.21109 0.99029 0.90121 1.04230 1.17628 0.89857 0.91307 1.09852 1.18860 1.01451 0.97040 0.91451 1.17118 0.97056 0.92537 0.80283 1.91539 1.89565 1.84501 1.44769 1.21048 1.01586 0.95738 1.00116 1.16985 0.95284 0.84732 0.91738 1.91555 1.73707 1.46499 1.97134 1.17948 1.01450 0.94269 0.86867 1.84898 1.49678 1.60584 1.33991 1.17526 0.97543 0.93521 0.80834 1.91502 1.89450 1.84402 1.44772 0.86432 0.92995 0.92813 0.84689 0.87120 0.90296 0.87498 0.79181 0.72487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.80 113.37 1.11 1.82 16 2 O -0.34 -12.99 9.93 -89.33 -0.89 -13.88 16 3 C 0.02 1.07 6.72 23.01 0.15 1.23 16 4 C -0.17 -7.25 8.95 22.06 0.20 -7.05 16 5 C -0.19 -9.19 9.72 22.50 0.22 -8.97 16 6 C 0.06 2.97 5.56 -21.30 -0.12 2.86 16 7 C -0.50 -26.76 9.04 23.40 0.21 -26.55 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.03 1.77 5.14 85.22 0.44 2.20 16 10 N -0.83 -44.02 10.96 21.81 0.24 -43.78 16 11 Si 0.98 38.76 29.59 68.60 2.03 40.79 16 12 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 13 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 14 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 15 C -0.13 -6.71 8.40 22.94 0.19 -6.52 16 16 C -0.09 -4.09 4.59 -19.99 -0.09 -4.19 16 17 C -0.09 -3.52 4.83 -19.97 -0.10 -3.61 16 18 C 0.15 5.43 7.27 22.59 0.16 5.59 16 19 F -0.13 -5.04 16.82 44.97 0.76 -4.28 16 20 C -0.17 -4.49 9.98 22.32 0.22 -4.27 16 21 C 0.13 3.53 7.31 22.49 0.16 3.69 16 22 F -0.11 -2.64 17.10 44.97 0.77 -1.87 16 23 C 0.04 1.25 6.71 22.52 0.15 1.40 16 24 O -0.48 -11.97 13.22 -94.17 -1.25 -13.22 16 25 C 0.13 4.64 7.28 22.66 0.17 4.81 16 26 F -0.12 -4.91 16.66 44.97 0.75 -4.16 16 27 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.33 7.65 -2.39 -0.02 1.31 16 29 H 0.05 1.35 7.65 -2.39 -0.02 1.33 16 30 H 0.14 4.75 6.25 -2.91 -0.02 4.73 16 31 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16 33 H 0.11 6.08 6.19 -2.91 -0.02 6.06 16 34 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.42 5.84 9.07 -74.06 -0.67 5.17 16 Total: -1.00 -65.43 324.17 6.02 -59.41 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.52 Total: 18.56 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.09 Total: -37.56 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -2.13 Total: -27.10 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.27 Total: -10.31 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -65.43 6.02 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235998364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.726 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds