Wall clock time and date at job start Tue Mar 31 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35695 * 117.00121 * 2 1 4 4 C 1.37918 * 120.18441 * 0.27492 * 3 2 1 5 5 C 1.39708 * 119.92194 * 180.27093 * 4 3 2 6 6 C 1.47882 * 119.84105 * 179.72479 * 5 4 3 7 7 C 1.39882 * 120.12867 * 64.95688 * 6 5 4 8 8 F 1.35103 * 120.03053 * 0.02562 * 7 6 5 9 9 C 1.38098 * 119.93674 * 180.22839 * 7 6 5 10 10 C 1.38562 * 120.19564 * 359.52254 * 9 7 6 11 11 F 1.35099 * 119.87347 * 180.25175 * 10 9 7 12 12 C 1.38964 * 120.25580 * 0.27073 * 10 9 7 13 13 O 1.36050 * 119.97119 * 179.97438 * 12 10 9 14 14 C 1.38524 * 120.05445 * 359.95666 * 12 10 9 15 15 F 1.35106 * 120.09269 * 179.97438 * 14 12 10 16 16 C 1.40147 * 120.31045 * 359.45290 * 5 4 3 17 17 C 1.36083 * 120.38485 * 0.27082 * 16 5 4 18 18 C 1.40931 * 120.06440 * 0.02562 * 17 16 5 19 19 C 1.40806 * 120.15429 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00308 * 204.94362 * 19 18 17 21 21 C 1.39959 * 120.00150 * 24.94267 * 19 18 17 22 22 N 1.30871 * 119.99817 * 17.82946 * 21 19 18 23 23 Si 1.86796 * 120.00166 * 197.83069 * 21 19 18 24 24 H 1.48507 * 109.46934 * 94.68832 * 23 21 19 25 25 H 1.48496 * 109.47373 * 214.68717 * 23 21 19 26 26 H 1.48497 * 109.47158 * 334.69238 * 23 21 19 27 27 H 1.09001 * 109.46871 * 59.99558 * 1 2 3 28 28 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47285 * 299.99993 * 1 2 3 30 30 H 1.07997 * 120.03953 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.90525 * 179.79093 * 9 7 6 32 32 H 0.96698 * 114.00875 * 90.00006 * 13 12 10 33 33 H 1.08001 * 119.80478 * 180.25190 * 16 5 4 34 34 H 1.07998 * 119.96544 * 179.97438 * 17 16 5 35 35 H 0.96998 * 119.99757 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2976 2.3681 0.0057 5 6 1.9376 3.6100 0.0000 6 6 1.1344 4.8517 0.0000 7 6 0.3274 5.1659 1.0985 8 9 0.2807 4.3351 2.1628 9 6 -0.4246 6.3242 1.0923 10 6 -0.3748 7.1816 0.0049 11 9 -1.1094 8.3155 0.0079 12 6 0.4274 6.8795 -1.0888 13 8 0.4715 7.7253 -2.1536 14 6 1.1825 5.7182 -1.0957 15 9 1.9623 5.4235 -2.1589 16 6 3.3371 3.6845 -0.0001 17 6 4.0869 2.5489 0.0000 18 6 3.4580 1.2877 -0.0005 19 6 4.2319 0.1114 0.0001 20 1 3.8206 -0.8059 -0.3947 21 6 5.5343 0.1308 0.5122 22 7 5.9156 1.1090 1.2936 23 14 6.7283 -1.2392 0.0803 24 1 7.5527 -0.8284 -1.0846 25 1 7.6129 -1.5095 1.2421 26 1 5.9686 -2.4689 -0.2600 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2190 2.3158 0.0098 31 1 -1.0501 6.5646 1.9393 32 1 1.1566 8.4045 -2.0884 33 1 3.8233 4.6489 -0.0004 34 1 5.1649 2.6142 -0.0005 35 1 6.8181 1.1222 1.6489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235998933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:38 Heat of formation + Delta-G solvation = -167.327697 kcal Electronic energy + Delta-G solvation = -26876.284212 eV Core-core repulsion = 22390.408417 eV Total energy + Delta-G solvation = -4485.875795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.08865 -48.75545 -48.72357 -39.24776 -38.66258 -36.94994 -35.98097 -33.96707 -31.37631 -29.63706 -29.00872 -28.67245 -26.58936 -25.27998 -23.06120 -22.76900 -20.87250 -20.55642 -18.66477 -18.32126 -17.91467 -17.58425 -16.69631 -16.33629 -15.84964 -15.66364 -15.49606 -15.24142 -15.18970 -14.85280 -14.69629 -14.60034 -14.43301 -14.22599 -13.77941 -13.17861 -12.93426 -12.61116 -12.57266 -12.20787 -11.75483 -11.53159 -11.45179 -11.29429 -11.15421 -10.89391 -10.88621 -10.55474 -10.04249 -9.89088 -9.68367 -9.31160 -8.77036 -8.54198 -7.56267 -7.18374 -6.88773 -4.40118 0.73447 0.80814 2.44788 2.93063 2.99691 3.02705 3.06200 3.18826 3.47418 3.83196 3.93274 4.29111 4.31284 4.38738 4.44739 4.74718 4.92319 5.41222 5.50996 5.68413 5.72728 5.78746 5.81587 5.90464 5.94604 5.97033 6.08014 6.27172 6.54929 6.78666 6.90961 7.10033 7.20434 7.34973 7.51876 7.58996 7.85708 8.02912 8.27649 8.52772 8.65150 8.92505 9.99045 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.003715 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.625785 B = 7534.595385 C = 8090.336645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.008 3.992 4 C -0.136 4.136 5 C -0.195 4.195 6 C -0.047 4.047 7 C 0.146 3.854 8 F -0.114 7.114 9 C -0.188 4.188 10 C 0.109 3.891 11 F -0.124 7.124 12 C 0.026 3.974 13 O -0.476 6.476 14 C 0.129 3.871 15 F -0.109 7.109 16 C -0.080 4.080 17 C -0.156 4.156 18 C 0.113 3.887 19 C -0.428 4.428 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.780 5.780 23 Si 0.914 3.086 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.259 1.259 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 8.337 -0.911 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.036 4.036 4 C -0.155 4.155 5 C -0.197 4.197 6 C -0.049 4.049 7 C 0.126 3.874 8 F -0.092 7.092 9 C -0.208 4.208 10 C 0.089 3.911 11 F -0.103 7.103 12 C -0.021 4.021 13 O -0.285 6.285 14 C 0.109 3.891 15 F -0.087 7.087 16 C -0.098 4.098 17 C -0.176 4.176 18 C 0.110 3.890 19 C -0.456 4.456 20 H 0.106 0.894 21 C -0.148 4.148 22 N -0.404 5.404 23 Si 0.738 3.262 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.183 1.183 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.172 0.828 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.244 7.876 -0.969 10.745 hybrid contribution 0.600 0.069 0.132 0.618 sum -6.645 7.945 -0.838 10.391 Atomic orbital electron populations 1.22748 0.81599 1.01872 1.00000 1.85973 1.18313 1.27900 1.90409 1.18970 0.92214 0.82578 1.09823 1.20465 0.97098 0.91586 1.06393 1.17237 0.92126 0.88444 1.21852 1.19006 0.98056 0.96623 0.91230 1.17146 0.97270 0.88462 0.84475 1.91568 1.94699 1.70110 1.52831 1.20846 1.04633 0.95075 1.00256 1.17155 0.95365 0.84765 0.93812 1.91511 1.74606 1.47535 1.96619 1.18128 1.01501 0.93099 0.89351 1.84940 1.59407 1.45243 1.38921 1.17566 0.92317 0.94187 0.85076 1.91556 1.71551 1.92824 1.52723 1.20268 0.91590 0.97410 1.00575 1.20703 0.99667 0.90329 1.06861 1.17158 0.87403 0.94100 0.90369 1.19591 0.96495 0.96934 1.32614 0.89394 1.26033 0.98972 0.97172 0.92608 1.69841 1.19411 1.30348 1.20776 0.86188 0.79685 0.81286 0.79059 1.19119 1.20109 1.18266 0.94226 0.89888 0.94055 0.88468 0.82838 0.75351 0.89205 0.85543 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.07 9.77 -18.79 -0.18 -7.25 16 3 C 0.01 0.20 6.71 -38.45 -0.26 -0.06 16 4 C -0.14 -3.02 8.52 -39.15 -0.33 -3.36 16 5 C -0.19 -4.21 4.73 -104.68 -0.49 -4.70 16 6 C -0.05 -0.85 5.31 -104.76 -0.56 -1.41 16 7 C 0.15 2.36 7.24 -39.02 -0.28 2.07 16 8 F -0.11 -1.99 16.66 2.25 0.04 -1.95 16 9 C -0.19 -2.46 9.98 -39.51 -0.39 -2.86 16 10 C 0.11 1.45 7.31 -39.19 -0.29 1.17 16 11 F -0.12 -1.59 17.10 2.25 0.04 -1.55 16 12 C 0.03 0.38 6.71 -39.21 -0.26 0.11 16 13 O -0.48 -6.04 13.22 -19.90 -0.26 -6.30 16 14 C 0.13 2.15 7.25 -38.90 -0.28 1.87 16 15 F -0.11 -1.96 16.51 2.25 0.04 -1.93 16 16 C -0.08 -1.81 9.47 -39.64 -0.38 -2.18 16 17 C -0.16 -3.89 8.61 -39.34 -0.34 -4.23 16 18 C 0.11 2.94 5.58 -106.66 -0.60 2.34 16 19 C -0.43 -11.07 8.69 -37.97 -0.33 -11.40 16 20 H 0.09 2.26 7.64 -52.48 -0.40 1.86 16 21 C 0.07 1.72 5.13 -17.32 -0.09 1.63 16 22 N -0.78 -19.15 10.97 55.55 0.61 -18.54 16 23 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 27 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 30 H 0.10 1.95 6.29 -52.49 -0.33 1.62 16 31 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.39 3.00 9.07 45.56 0.41 3.41 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.13 3.20 6.17 -52.49 -0.32 2.88 16 35 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -28.32 323.24 -5.61 -33.93 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -1.84 Total: 5.23 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.89 Total: -19.43 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.61 Total: -18.54 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.45 Total: -13.56 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.43 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.32 -5.61 -33.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235998933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.400 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds