Wall clock time and date at job start Tue Mar 31 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35695 * 117.00121 * 2 1 4 4 C 1.37918 * 120.18441 * 0.27492 * 3 2 1 5 5 C 1.39708 * 119.92194 * 180.27093 * 4 3 2 6 6 C 1.47882 * 119.84105 * 179.72479 * 5 4 3 7 7 C 1.39882 * 120.12867 * 64.95688 * 6 5 4 8 8 F 1.35103 * 120.03053 * 0.02562 * 7 6 5 9 9 C 1.38098 * 119.93674 * 180.22839 * 7 6 5 10 10 C 1.38562 * 120.19564 * 359.52254 * 9 7 6 11 11 F 1.35099 * 119.87347 * 180.25175 * 10 9 7 12 12 C 1.38964 * 120.25580 * 0.27073 * 10 9 7 13 13 O 1.36050 * 119.97119 * 179.97438 * 12 10 9 14 14 C 1.38524 * 120.05445 * 359.95666 * 12 10 9 15 15 F 1.35106 * 120.09269 * 179.97438 * 14 12 10 16 16 C 1.40147 * 120.31045 * 359.45290 * 5 4 3 17 17 C 1.36083 * 120.38485 * 0.27082 * 16 5 4 18 18 C 1.40931 * 120.06440 * 0.02562 * 17 16 5 19 19 C 1.40806 * 120.15429 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00308 * 204.94362 * 19 18 17 21 21 C 1.39959 * 120.00150 * 24.94267 * 19 18 17 22 22 N 1.30871 * 119.99817 * 17.82946 * 21 19 18 23 23 Si 1.86796 * 120.00166 * 197.83069 * 21 19 18 24 24 H 1.48507 * 109.46934 * 94.68832 * 23 21 19 25 25 H 1.48496 * 109.47373 * 214.68717 * 23 21 19 26 26 H 1.48497 * 109.47158 * 334.69238 * 23 21 19 27 27 H 1.09001 * 109.46871 * 59.99558 * 1 2 3 28 28 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47285 * 299.99993 * 1 2 3 30 30 H 1.07997 * 120.03953 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.90525 * 179.79093 * 9 7 6 32 32 H 0.96698 * 114.00875 * 90.00006 * 13 12 10 33 33 H 1.08001 * 119.80478 * 180.25190 * 16 5 4 34 34 H 1.07998 * 119.96544 * 179.97438 * 17 16 5 35 35 H 0.96998 * 119.99757 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2976 2.3681 0.0057 5 6 1.9376 3.6100 0.0000 6 6 1.1344 4.8517 0.0000 7 6 0.3274 5.1659 1.0985 8 9 0.2807 4.3351 2.1628 9 6 -0.4246 6.3242 1.0923 10 6 -0.3748 7.1816 0.0049 11 9 -1.1094 8.3155 0.0079 12 6 0.4274 6.8795 -1.0888 13 8 0.4715 7.7253 -2.1536 14 6 1.1825 5.7182 -1.0957 15 9 1.9623 5.4235 -2.1589 16 6 3.3371 3.6845 -0.0001 17 6 4.0869 2.5489 0.0000 18 6 3.4580 1.2877 -0.0005 19 6 4.2319 0.1114 0.0001 20 1 3.8206 -0.8059 -0.3947 21 6 5.5343 0.1308 0.5122 22 7 5.9156 1.1090 1.2936 23 14 6.7283 -1.2392 0.0803 24 1 7.5527 -0.8284 -1.0846 25 1 7.6129 -1.5095 1.2421 26 1 5.9686 -2.4689 -0.2600 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2190 2.3158 0.0098 31 1 -1.0501 6.5646 1.9393 32 1 1.1566 8.4045 -2.0884 33 1 3.8233 4.6489 -0.0004 34 1 5.1649 2.6142 -0.0005 35 1 6.8181 1.1222 1.6489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235998933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:37 Heat of formation + Delta-G solvation = -183.869886 kcal Electronic energy + Delta-G solvation = -26877.001535 eV Core-core repulsion = 22390.408417 eV Total energy + Delta-G solvation = -4486.593118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.16225 -50.07971 -50.05063 -40.67153 -40.13151 -38.29276 -37.50884 -35.68506 -32.92363 -30.94198 -30.75177 -30.15332 -28.09634 -26.91000 -24.36783 -24.10802 -22.57388 -22.21425 -19.85439 -19.53127 -19.40263 -19.12009 -18.22719 -17.61819 -17.19414 -17.08557 -16.87992 -16.51864 -16.46234 -16.30384 -16.25823 -16.04086 -15.86168 -15.52390 -15.28168 -14.63537 -14.32563 -14.27147 -13.90630 -13.68936 -13.26705 -13.18257 -12.98184 -12.79495 -12.67642 -12.37749 -12.18459 -11.97166 -11.72860 -11.61594 -11.38694 -11.07479 -10.03093 -9.80284 -9.32396 -8.97817 -8.65298 -6.28091 -0.47857 -0.38560 0.74102 1.08404 1.38771 1.47504 1.52811 1.91836 2.20310 2.28486 2.61109 2.84495 2.88196 3.09510 3.13382 3.49985 3.53302 3.76259 4.22467 4.32460 4.42567 4.45525 4.47265 4.47948 4.58896 4.70452 4.71830 4.73545 4.96130 5.09425 5.32355 5.36028 5.43644 5.73516 5.77229 6.02446 6.19997 6.43967 6.49723 6.70692 6.81328 7.15696 8.26074 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.003715 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.625785 B = 7534.595385 C = 8090.336645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C -0.005 4.005 4 C -0.143 4.143 5 C -0.178 4.178 6 C -0.074 4.074 7 C 0.141 3.859 8 F -0.125 7.125 9 C -0.161 4.161 10 C 0.126 3.874 11 F -0.114 7.114 12 C 0.044 3.956 13 O -0.482 6.482 14 C 0.118 3.882 15 F -0.123 7.123 16 C -0.092 4.092 17 C -0.171 4.171 18 C 0.076 3.924 19 C -0.470 4.470 20 H 0.075 0.925 21 C 0.036 3.964 22 N -0.814 5.814 23 Si 0.984 3.016 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.261 1.261 27 H 0.050 0.950 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.189 0.811 32 H 0.415 0.585 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 10.126 -0.816 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.252 6.252 3 C -0.049 4.049 4 C -0.162 4.162 5 C -0.180 4.180 6 C -0.076 4.076 7 C 0.121 3.879 8 F -0.103 7.103 9 C -0.180 4.180 10 C 0.106 3.894 11 F -0.092 7.092 12 C -0.003 4.003 13 O -0.295 6.295 14 C 0.098 3.902 15 F -0.101 7.101 16 C -0.110 4.110 17 C -0.191 4.191 18 C 0.073 3.927 19 C -0.498 4.498 20 H 0.093 0.907 21 C -0.181 4.181 22 N -0.439 5.439 23 Si 0.805 3.195 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.185 1.185 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.207 0.793 32 H 0.275 0.725 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.060 9.699 -0.876 13.302 hybrid contribution 0.886 -0.205 0.066 0.912 sum -8.174 9.494 -0.810 12.554 Atomic orbital electron populations 1.23083 0.78698 1.04328 1.00770 1.85921 1.21381 1.27520 1.90367 1.19162 0.92194 0.83824 1.09706 1.20739 0.98166 0.91263 1.06054 1.17579 0.92104 0.90057 1.18229 1.18867 0.99575 0.96080 0.93120 1.17164 0.97606 0.89414 0.83719 1.91547 1.94843 1.70693 1.53232 1.21045 1.03112 0.92965 1.00922 1.17079 0.94433 0.84721 0.93215 1.91555 1.74196 1.46971 1.96507 1.18019 1.00314 0.92365 0.89647 1.84886 1.60526 1.45658 1.38417 1.17615 0.93062 0.94923 0.84588 1.91522 1.72155 1.93083 1.53346 1.20480 0.92484 0.97376 1.00684 1.20677 0.99304 0.91063 1.08062 1.17513 0.88770 0.94644 0.91769 1.19652 0.98243 0.96652 1.35249 0.90688 1.26791 0.99860 0.99579 0.91821 1.69871 1.20207 1.32133 1.21668 0.85154 0.77287 0.77967 0.79128 1.18404 1.18875 1.18480 0.93169 0.86744 0.93329 0.86291 0.79341 0.72477 0.87643 0.86930 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.81 113.37 1.11 1.98 16 2 O -0.34 -15.69 9.77 -90.14 -0.88 -16.58 16 3 C 0.00 -0.23 6.71 23.00 0.15 -0.07 16 4 C -0.14 -6.42 8.52 22.55 0.19 -6.22 16 5 C -0.18 -7.73 4.73 -19.90 -0.09 -7.83 16 6 C -0.07 -2.59 5.31 -19.96 -0.11 -2.70 16 7 C 0.14 4.18 7.24 22.63 0.16 4.34 16 8 F -0.12 -4.13 16.66 44.97 0.75 -3.38 16 9 C -0.16 -3.52 9.98 22.31 0.22 -3.30 16 10 C 0.13 2.80 7.31 22.52 0.16 2.97 16 11 F -0.11 -2.37 17.10 44.97 0.77 -1.60 16 12 C 0.04 1.11 6.71 22.51 0.15 1.26 16 13 O -0.48 -10.56 13.22 -94.12 -1.24 -11.80 16 14 C 0.12 3.74 7.25 22.71 0.16 3.91 16 15 F -0.12 -4.36 16.51 44.97 0.74 -3.62 16 16 C -0.09 -4.29 9.47 22.23 0.21 -4.08 16 17 C -0.17 -9.01 8.61 22.43 0.19 -8.81 16 18 C 0.08 4.17 5.58 -21.18 -0.12 4.05 16 19 C -0.47 -25.74 8.69 23.32 0.20 -25.54 16 20 H 0.07 4.12 7.64 -2.91 -0.02 4.10 16 21 C 0.04 1.79 5.13 85.25 0.44 2.22 16 22 N -0.81 -41.80 10.97 21.83 0.24 -41.56 16 23 Si 0.98 38.05 29.60 68.60 2.03 40.08 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 27 H 0.05 1.54 7.67 -2.39 -0.02 1.52 16 28 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.05 1.52 7.65 -2.38 -0.02 1.50 16 30 H 0.12 4.68 6.29 -2.91 -0.02 4.66 16 31 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.42 4.85 9.07 -74.06 -0.67 4.18 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 34 H 0.11 6.09 6.17 -2.91 -0.02 6.07 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 Total: -1.00 -64.49 323.24 5.97 -58.51 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.52 Total: 17.76 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 3.05 Total: -37.81 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -2.13 Total: -28.38 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 2.26 Total: -8.60 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -64.49 5.97 -58.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235998933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.359 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds