Wall clock time and date at job start Tue Mar 31 2020 14:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86806 * 119.99902 * 2 1 4 4 H 1.48505 * 109.46930 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47262 * 119.99919 * 3 2 1 6 6 H 1.48504 * 109.46991 * 240.00410 * 3 2 1 7 7 C 1.40170 * 120.00546 * 180.27722 * 2 1 3 8 8 H 1.07994 * 120.00353 * 180.02562 * 7 2 1 9 9 C 1.40800 * 119.99651 * 359.97438 * 7 2 1 10 10 N 1.33979 * 120.28720 * 351.82071 * 9 7 2 11 11 C 1.31601 * 119.89792 * 179.97438 * 10 9 7 12 12 C 1.39196 * 120.50505 * 0.02850 * 11 10 9 13 13 N 1.32000 * 120.59126 * 359.97438 * 12 11 10 14 14 C 1.32866 * 120.07702 * 359.70389 * 13 12 11 15 15 C 1.47797 * 120.25046 * 180.30683 * 14 13 12 16 16 C 1.39713 * 120.15388 * 126.11725 * 15 14 13 17 17 C 1.37886 * 119.84254 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.92511 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47326 * 89.99797 * 18 17 16 20 20 F 1.39904 * 109.47442 * 210.00354 * 18 17 16 21 21 F 1.39903 * 109.46915 * 329.99722 * 18 17 16 22 22 C 1.38432 * 120.15379 * 0.02562 * 17 16 15 23 23 C 1.38380 * 120.31219 * 359.97438 * 22 17 16 24 24 C 1.37939 * 120.14963 * 359.73655 * 23 22 17 25 25 C 1.50701 * 120.07790 * 180.27757 * 24 23 22 26 26 O 1.42902 * 109.46973 * 0.26130 * 25 24 23 27 27 H 0.96997 * 120.00035 * 359.72222 * 1 2 3 28 28 H 1.08003 * 119.74849 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.70811 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.07760 * 359.95239 * 16 15 14 31 31 H 1.08002 * 119.84080 * 179.97438 * 22 17 16 32 32 H 1.07997 * 119.92739 * 180.02562 * 23 22 17 33 33 H 1.09002 * 109.46735 * 120.25521 * 25 24 23 34 34 H 1.08998 * 109.47358 * 240.26067 * 25 24 23 35 35 H 0.96708 * 113.99684 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0945 1.6965 1.2124 6 1 3.0945 1.6965 -1.2126 7 6 2.0078 -1.2138 -0.0059 8 1 3.0877 -1.2138 -0.0055 9 6 1.3038 -2.4332 -0.0112 10 7 -0.0257 -2.4466 0.1538 11 6 -0.6760 -3.5907 0.1470 12 6 0.0069 -4.7906 -0.0300 13 7 1.3166 -4.8002 -0.1943 14 6 1.9957 -3.6582 -0.1978 15 6 3.4613 -3.6641 -0.3882 16 6 4.0417 -2.8852 -1.3924 17 6 5.4098 -2.8951 -1.5640 18 6 6.0378 -2.0553 -2.6463 19 9 6.3455 -0.7899 -2.1352 20 9 7.2091 -2.6740 -3.0962 21 9 5.1417 -1.9223 -3.7124 22 6 6.2078 -3.6747 -0.7445 23 6 5.6397 -4.4486 0.2522 24 6 4.2731 -4.4437 0.4389 25 6 3.6567 -5.2823 1.5289 26 8 4.6859 -5.9823 2.2309 27 1 -0.4850 0.8400 0.0041 28 1 -1.7477 -3.5987 0.2807 29 1 -0.5397 -5.7221 -0.0330 30 1 3.4201 -2.2771 -2.0330 31 1 7.2788 -3.6789 -0.8836 32 1 6.2682 -5.0542 0.8883 33 1 3.1178 -4.6371 2.2228 34 1 2.9648 -5.9999 1.0879 35 1 4.3610 -6.5431 2.9486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236042699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:41 Heat of formation + Delta-G solvation = -137.526632 kcal Electronic energy + Delta-G solvation = -27468.556681 eV Core-core repulsion = 23016.265907 eV Total energy + Delta-G solvation = -4452.290773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.87230 -47.40074 -47.32058 -39.72860 -38.45187 -36.43316 -34.30599 -32.99376 -31.74619 -31.49776 -29.07812 -27.19292 -26.33179 -24.10539 -23.50156 -22.27139 -21.35664 -20.40093 -18.20354 -18.14058 -17.90472 -17.80781 -17.03933 -16.22418 -15.53288 -15.17030 -15.06847 -14.65528 -14.44513 -14.28920 -14.20822 -14.05427 -13.80851 -13.61248 -13.50339 -13.43487 -13.00664 -12.88360 -12.80502 -12.22339 -12.14184 -11.67042 -11.63006 -11.45486 -10.99915 -10.84081 -10.68404 -10.41554 -10.14650 -9.98344 -9.72216 -9.32993 -8.56566 -8.52254 -7.85336 -7.54936 -6.74173 -4.90437 1.29327 1.63995 2.35853 2.79650 2.93146 2.96672 2.97999 3.06242 3.71617 3.89709 4.03974 4.33927 4.39278 4.45285 4.74351 5.11912 5.22340 5.35317 5.48771 5.56949 5.75732 5.82105 5.89852 5.95883 6.04123 6.19635 6.26895 6.39728 6.48837 6.57799 6.72495 6.78271 6.90198 7.04675 7.23154 7.45706 7.78670 7.83619 8.16635 8.43391 8.99097 9.60895 9.89250 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.006953 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.448276 B = 4025.819145 C = 6016.612609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.397 4.397 8 H 0.095 0.905 9 C 0.223 3.777 10 N -0.451 5.451 11 C 0.093 3.907 12 C -0.119 4.119 13 N -0.408 5.408 14 C -0.044 4.044 15 C 0.036 3.964 16 C -0.051 4.051 17 C -0.190 4.190 18 C 0.510 3.490 19 F -0.179 7.179 20 F -0.183 7.183 21 F -0.178 7.178 22 C -0.093 4.093 23 C -0.104 4.104 24 C -0.051 4.051 25 C 0.119 3.881 26 O -0.576 6.576 27 H 0.282 0.718 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -3.682 0.393 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.162 4.162 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.183 1.183 6 H -0.181 1.181 7 C -0.427 4.427 8 H 0.113 0.887 9 C 0.099 3.901 10 N -0.167 5.167 11 C -0.079 4.079 12 C -0.281 4.281 13 N -0.120 5.120 14 C -0.191 4.191 15 C 0.034 3.966 16 C -0.071 4.071 17 C -0.192 4.192 18 C 0.456 3.544 19 F -0.160 7.160 20 F -0.164 7.164 21 F -0.159 7.159 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.052 4.052 25 C 0.043 3.957 26 O -0.382 6.382 27 H 0.093 0.907 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.218 -3.138 -0.074 7.871 hybrid contribution -0.181 0.619 0.166 0.666 sum 7.037 -2.519 0.093 7.475 Atomic orbital electron populations 1.70012 1.07491 1.29156 1.25275 1.26200 0.95019 1.01676 0.93343 0.86346 0.80331 0.79572 0.80869 1.19712 1.18280 1.18053 1.19769 0.95065 0.89106 1.38736 0.88683 1.19183 0.88922 0.92100 0.89936 1.69557 1.07397 1.24725 1.14982 1.23570 1.00031 0.90294 0.94026 1.22553 0.90934 0.97996 1.16574 1.67638 1.08490 1.29253 1.06605 1.19898 0.91704 0.90699 1.16766 1.17942 0.91441 0.94170 0.93003 1.21012 0.92197 0.97245 0.96603 1.19761 0.95410 1.03908 1.00105 1.18371 0.75907 0.78502 0.81650 1.93211 1.93259 1.42589 1.86961 1.93148 1.50267 1.82703 1.90331 1.93186 1.67880 1.96026 1.58819 1.20787 0.99333 0.95966 0.95027 1.20759 0.94439 0.99247 0.97741 1.19975 0.93400 0.96343 0.95463 1.20926 0.88541 0.94345 0.91932 1.86362 1.36135 1.64419 1.51281 0.90652 0.85077 0.85258 0.84221 0.85496 0.84547 0.92405 0.90307 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.08 11.52 55.56 0.64 -16.44 16 2 C 0.07 1.55 5.50 -17.31 -0.10 1.45 16 3 Si 0.91 17.54 29.56 -169.99 -5.03 12.52 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.40 -9.70 7.96 -37.89 -0.30 -10.00 16 8 H 0.10 2.22 5.83 -52.49 -0.31 1.92 16 9 C 0.22 5.60 6.53 -84.55 -0.55 5.04 16 10 N -0.45 -11.41 8.09 -10.72 -0.09 -11.49 16 11 C 0.09 2.04 11.22 -17.29 -0.19 1.85 16 12 C -0.12 -2.48 11.22 -17.12 -0.19 -2.68 16 13 N -0.41 -9.09 8.87 -8.97 -0.08 -9.17 16 14 C -0.04 -1.03 5.72 -82.10 -0.47 -1.49 16 15 C 0.04 0.75 4.96 -104.90 -0.52 0.23 16 16 C -0.05 -1.01 7.13 -39.16 -0.28 -1.29 16 17 C -0.19 -3.31 5.45 -104.68 -0.57 -3.88 16 18 C 0.51 8.30 3.36 36.00 0.12 8.43 16 19 F -0.18 -2.98 17.30 2.25 0.04 -2.94 16 20 F -0.18 -2.74 16.45 2.25 0.04 -2.70 16 21 F -0.18 -3.01 16.45 2.25 0.04 -2.97 16 22 C -0.09 -1.46 9.40 -39.46 -0.37 -1.83 16 23 C -0.10 -1.71 9.37 -39.64 -0.37 -2.08 16 24 C -0.05 -0.94 5.91 -104.20 -0.62 -1.56 16 25 C 0.12 2.01 6.26 36.01 0.23 2.24 16 26 O -0.58 -8.09 12.14 -35.23 -0.43 -8.51 16 27 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 28 H 0.13 2.45 8.06 -52.48 -0.42 2.02 16 29 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.14 2.86 7.17 -52.49 -0.38 2.48 16 31 H 0.13 1.66 7.59 -52.49 -0.40 1.26 16 32 H 0.14 2.03 7.00 -52.49 -0.37 1.66 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.38 7.06 -51.93 -0.37 1.01 16 35 H 0.38 3.45 9.12 45.56 0.42 3.86 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -27.70 318.02 -6.06 -33.77 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -1.80 Total: 8.74 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.19 Total: -5.58 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.47 Total: -37.10 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.43 Total: -8.51 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 0.11 Total: -8.62 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.70 -6.06 -33.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236042699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.761 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds