Wall clock time and date at job start Tue Mar 31 2020 14:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86806 * 119.99902 * 2 1 4 4 H 1.48505 * 109.46930 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47262 * 119.99919 * 3 2 1 6 6 H 1.48504 * 109.46991 * 240.00410 * 3 2 1 7 7 C 1.40170 * 120.00546 * 180.27722 * 2 1 3 8 8 H 1.07994 * 120.00353 * 180.02562 * 7 2 1 9 9 C 1.40800 * 119.99651 * 359.97438 * 7 2 1 10 10 N 1.33979 * 120.28720 * 351.82071 * 9 7 2 11 11 C 1.31601 * 119.89792 * 179.97438 * 10 9 7 12 12 C 1.39196 * 120.50505 * 0.02850 * 11 10 9 13 13 N 1.32000 * 120.59126 * 359.97438 * 12 11 10 14 14 C 1.32866 * 120.07702 * 359.70389 * 13 12 11 15 15 C 1.47797 * 120.25046 * 180.30683 * 14 13 12 16 16 C 1.39713 * 120.15388 * 126.11725 * 15 14 13 17 17 C 1.37886 * 119.84254 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.92511 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47326 * 89.99797 * 18 17 16 20 20 F 1.39904 * 109.47442 * 210.00354 * 18 17 16 21 21 F 1.39903 * 109.46915 * 329.99722 * 18 17 16 22 22 C 1.38432 * 120.15379 * 0.02562 * 17 16 15 23 23 C 1.38380 * 120.31219 * 359.97438 * 22 17 16 24 24 C 1.37939 * 120.14963 * 359.73655 * 23 22 17 25 25 C 1.50701 * 120.07790 * 180.27757 * 24 23 22 26 26 O 1.42902 * 109.46973 * 0.26130 * 25 24 23 27 27 H 0.96997 * 120.00035 * 359.72222 * 1 2 3 28 28 H 1.08003 * 119.74849 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.70811 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.07760 * 359.95239 * 16 15 14 31 31 H 1.08002 * 119.84080 * 179.97438 * 22 17 16 32 32 H 1.07997 * 119.92739 * 180.02562 * 23 22 17 33 33 H 1.09002 * 109.46735 * 120.25521 * 25 24 23 34 34 H 1.08998 * 109.47358 * 240.26067 * 25 24 23 35 35 H 0.96708 * 113.99684 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0945 1.6965 1.2124 6 1 3.0945 1.6965 -1.2126 7 6 2.0078 -1.2138 -0.0059 8 1 3.0877 -1.2138 -0.0055 9 6 1.3038 -2.4332 -0.0112 10 7 -0.0257 -2.4466 0.1538 11 6 -0.6760 -3.5907 0.1470 12 6 0.0069 -4.7906 -0.0300 13 7 1.3166 -4.8002 -0.1943 14 6 1.9957 -3.6582 -0.1978 15 6 3.4613 -3.6641 -0.3882 16 6 4.0417 -2.8852 -1.3924 17 6 5.4098 -2.8951 -1.5640 18 6 6.0378 -2.0553 -2.6463 19 9 6.3455 -0.7899 -2.1352 20 9 7.2091 -2.6740 -3.0962 21 9 5.1417 -1.9223 -3.7124 22 6 6.2078 -3.6747 -0.7445 23 6 5.6397 -4.4486 0.2522 24 6 4.2731 -4.4437 0.4389 25 6 3.6567 -5.2823 1.5289 26 8 4.6859 -5.9823 2.2309 27 1 -0.4850 0.8400 0.0041 28 1 -1.7477 -3.5987 0.2807 29 1 -0.5397 -5.7221 -0.0330 30 1 3.4201 -2.2771 -2.0330 31 1 7.2788 -3.6789 -0.8836 32 1 6.2682 -5.0542 0.8883 33 1 3.1178 -4.6371 2.2228 34 1 2.9648 -5.9999 1.0879 35 1 4.3610 -6.5431 2.9486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236042699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:41 Heat of formation + Delta-G solvation = -154.383870 kcal Electronic energy + Delta-G solvation = -27469.287665 eV Core-core repulsion = 23016.265907 eV Total energy + Delta-G solvation = -4453.021758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.17197 -48.68370 -48.63257 -41.30817 -39.99567 -37.63311 -36.04054 -34.58111 -33.34678 -32.98209 -30.66387 -28.53534 -28.06938 -25.50893 -25.00794 -23.99398 -22.86798 -21.81490 -19.61127 -19.49633 -19.42378 -19.28761 -18.26509 -17.91261 -16.93075 -16.77057 -16.63933 -16.01947 -15.85038 -15.79433 -15.53665 -15.40537 -15.10109 -14.97010 -14.80875 -14.79431 -14.69136 -14.44566 -14.08496 -13.71339 -13.62447 -13.34362 -13.08165 -12.99019 -12.56382 -12.26074 -12.14561 -11.94992 -11.71012 -11.55433 -11.27420 -11.06431 -10.13331 -9.90700 -9.55744 -9.23530 -8.46833 -6.69595 -0.12022 0.17372 0.68937 1.09324 1.34867 1.45440 1.48769 1.65464 2.11850 2.48089 2.69037 2.72771 3.03206 3.21587 3.42885 3.62604 3.72192 3.91921 3.99067 4.14722 4.23618 4.32862 4.40770 4.55170 4.59528 4.66786 4.77044 4.89638 5.00136 5.06644 5.11464 5.21317 5.34245 5.61794 5.74256 5.83615 6.05761 6.41334 6.66186 6.85170 7.25194 7.85339 8.19995 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.006953 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.448276 B = 4025.819145 C = 6016.612609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.030 3.970 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.255 1.255 6 H -0.257 1.257 7 C -0.423 4.423 8 H 0.095 0.905 9 C 0.195 3.805 10 N -0.486 5.486 11 C 0.080 3.920 12 C -0.114 4.114 13 N -0.417 5.417 14 C -0.047 4.047 15 C 0.008 3.992 16 C -0.063 4.063 17 C -0.194 4.194 18 C 0.516 3.484 19 F -0.180 7.180 20 F -0.171 7.171 21 F -0.184 7.184 22 C -0.076 4.076 23 C -0.098 4.098 24 C -0.061 4.061 25 C 0.133 3.867 26 O -0.574 6.574 27 H 0.288 0.712 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.120 0.880 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -4.347 0.732 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.179 1.179 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.113 0.887 9 C 0.071 3.929 10 N -0.203 5.203 11 C -0.091 4.091 12 C -0.275 4.275 13 N -0.129 5.129 14 C -0.193 4.193 15 C 0.006 3.994 16 C -0.082 4.082 17 C -0.195 4.195 18 C 0.462 3.538 19 F -0.162 7.162 20 F -0.152 7.152 21 F -0.165 7.165 22 C -0.094 4.094 23 C -0.115 4.115 24 C -0.062 4.062 25 C 0.055 3.945 26 O -0.383 6.383 27 H 0.099 0.901 28 H 0.178 0.822 29 H 0.183 0.817 30 H 0.138 0.862 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.084 -3.842 0.281 9.867 hybrid contribution -0.742 0.635 0.070 0.979 sum 8.342 -3.208 0.351 8.944 Atomic orbital electron populations 1.70073 1.08792 1.30241 1.26575 1.26960 0.95678 1.04393 0.92502 0.85421 0.79179 0.75894 0.80655 1.18425 1.17923 1.18116 1.19949 0.95219 0.89811 1.40306 0.88658 1.19571 0.89382 0.93329 0.90627 1.69496 1.07955 1.26525 1.16312 1.24087 1.01453 0.89968 0.93581 1.23143 0.90794 0.99140 1.14464 1.67748 1.09079 1.28967 1.07117 1.20189 0.93090 0.90258 1.15745 1.17972 0.90583 0.96159 0.94691 1.20865 0.93225 0.97437 0.96697 1.19868 0.94616 1.04284 1.00723 1.18179 0.76070 0.78309 0.81230 1.93209 1.93250 1.42707 1.86987 1.93172 1.49438 1.82445 1.90155 1.93177 1.68260 1.96040 1.59052 1.21192 1.00879 0.93965 0.93390 1.21027 0.93596 0.99067 0.97848 1.20211 0.94372 0.96095 0.95532 1.20597 0.88671 0.93828 0.91362 1.86301 1.35275 1.64635 1.52101 0.90086 0.82238 0.81743 0.86202 0.81947 0.82255 0.93994 0.91148 0.74851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.01 11.52 21.86 0.25 -36.76 16 2 C 0.03 1.42 5.50 85.33 0.47 1.89 16 3 Si 0.97 36.41 29.56 68.60 2.03 38.44 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.42 -21.42 7.96 23.37 0.19 -21.24 16 8 H 0.10 4.64 5.83 -2.91 -0.02 4.62 16 9 C 0.20 10.17 6.53 40.35 0.26 10.43 16 10 N -0.49 -25.32 8.09 -187.84 -1.52 -26.84 16 11 C 0.08 3.51 11.22 84.96 0.95 4.46 16 12 C -0.11 -4.70 11.22 84.90 0.95 -3.75 16 13 N -0.42 -18.66 8.87 -182.29 -1.62 -20.28 16 14 C -0.05 -2.23 5.72 42.43 0.24 -1.99 16 15 C 0.01 0.32 4.96 -20.05 -0.10 0.22 16 16 C -0.06 -2.51 7.13 22.54 0.16 -2.35 16 17 C -0.19 -6.46 5.45 -19.90 -0.11 -6.57 16 18 C 0.52 16.02 3.36 71.23 0.24 16.26 16 19 F -0.18 -5.73 17.30 44.97 0.78 -4.95 16 20 F -0.17 -4.65 16.45 44.97 0.74 -3.91 16 21 F -0.18 -6.14 16.45 44.97 0.74 -5.40 16 22 C -0.08 -2.17 9.40 22.35 0.21 -1.96 16 23 C -0.10 -2.95 9.37 22.23 0.21 -2.74 16 24 C -0.06 -2.21 5.91 -19.59 -0.12 -2.33 16 25 C 0.13 4.36 6.26 71.24 0.45 4.80 16 26 O -0.57 -14.69 12.14 -148.98 -1.81 -16.50 16 27 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 28 H 0.16 5.86 8.06 -2.91 -0.02 5.83 16 29 H 0.17 5.49 8.06 -2.91 -0.02 5.46 16 30 H 0.12 5.15 7.17 -2.91 -0.02 5.13 16 31 H 0.16 3.48 7.59 -2.91 -0.02 3.46 16 32 H 0.16 4.10 7.00 -2.91 -0.02 4.08 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.42 7.06 -2.39 -0.02 2.40 16 35 H 0.40 6.24 9.12 -74.05 -0.68 5.57 16 Total: -1.00 -60.81 318.02 4.11 -56.70 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.51 Total: 24.36 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 4.01 Total: -4.86 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.89 Total: -83.88 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.81 Total: -16.50 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 2.26 Total: -14.26 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -60.81 4.11 -56.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236042699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.682 kcal (2) G-P(sol) polarization free energy of solvation -60.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds