Wall clock time and date at job start Tue Mar 31 2020 14:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48500 * 109.46952 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46610 * 120.00317 * 3 2 1 6 6 H 1.48497 * 109.47090 * 240.00435 * 3 2 1 7 7 C 1.40048 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99484 * 4.94838 * 7 2 1 9 9 C 1.41323 * 119.99817 * 184.95112 * 7 2 1 10 10 C 1.40866 * 120.14351 * 184.84310 * 9 7 2 11 11 N 1.31863 * 119.95879 * 179.72778 * 10 9 7 12 12 C 1.32203 * 120.28188 * 0.55092 * 11 10 9 13 13 C 1.39994 * 120.30214 * 359.72601 * 12 11 10 14 14 C 1.48292 * 119.98679 * 180.02562 * 13 12 11 15 15 C 1.39412 * 120.13040 * 128.81470 * 14 13 12 16 16 C 1.37980 * 119.87724 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.93665 * 179.97438 * 16 15 14 18 18 F 1.39894 * 109.47474 * 89.99764 * 17 16 15 19 19 F 1.39901 * 109.46800 * 210.00047 * 17 16 15 20 20 F 1.39906 * 109.47131 * 329.99375 * 17 16 15 21 21 C 1.38360 * 120.12407 * 359.97438 * 16 15 14 22 22 C 1.38308 * 120.25271 * 359.97438 * 21 16 15 23 23 C 1.38023 * 120.13133 * 359.76683 * 22 21 16 24 24 C 1.50698 * 120.06835 * 180.25132 * 23 22 21 25 25 O 1.42896 * 109.47261 * 5.87147 * 24 23 22 26 26 N 1.32547 * 120.02913 * 359.97438 * 13 12 11 27 27 H 0.96999 * 119.99751 * 174.99640 * 1 2 3 28 28 H 1.07997 * 120.02243 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.85188 * 179.69962 * 12 11 10 30 30 H 1.08007 * 120.06286 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.86760 * 179.97438 * 21 16 15 32 32 H 1.08004 * 119.93447 * 180.02562 * 22 21 16 33 33 H 1.09004 * 109.46849 * 125.86576 * 24 23 22 34 34 H 1.08997 * 109.47288 * 245.86459 * 24 23 22 35 35 H 0.96693 * 114.00388 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 0.0006 5 1 3.0951 1.6963 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 1.4706 -2.1463 -0.0816 9 6 3.4169 -1.2151 0.1051 10 6 4.1320 -2.4244 0.0026 11 7 5.4473 -2.4216 0.0963 12 6 6.0989 -1.2890 0.2972 13 6 5.3992 -0.0814 0.4066 14 6 6.1372 1.1850 0.6314 15 6 5.9018 2.2873 -0.1891 16 6 6.5918 3.4629 0.0244 17 6 6.3388 4.6550 -0.8620 18 9 5.3114 5.4321 -0.3166 19 9 7.5048 5.4225 -0.9554 20 9 5.9656 4.2171 -2.1373 21 6 7.5156 3.5493 1.0508 22 6 7.7525 2.4594 1.8686 23 6 7.0643 1.2799 1.6678 24 6 7.3195 0.0950 2.5633 25 8 8.2046 0.4770 3.6182 26 7 4.0775 -0.0693 0.3084 27 1 -0.4850 -0.8369 -0.0733 28 1 3.6037 -3.3528 -0.1567 29 1 7.1759 -1.2954 0.3777 30 1 5.1812 2.2209 -0.9909 31 1 8.0537 4.4714 1.2139 32 1 8.4745 2.5327 2.6686 33 1 6.3763 -0.2496 2.9874 34 1 7.7719 -0.7086 1.9824 35 1 8.4131 -0.2379 4.2349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236049077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:44 Heat of formation + Delta-G solvation = -151.480315 kcal Electronic energy + Delta-G solvation = -27290.498894 eV Core-core repulsion = 22837.603044 eV Total energy + Delta-G solvation = -4452.895850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.09069 -47.61610 -47.53543 -40.20203 -38.92761 -36.75242 -34.45633 -33.48749 -32.55950 -31.59727 -29.53950 -27.64638 -26.10454 -24.49948 -24.07740 -22.22438 -21.70480 -20.63614 -18.80933 -18.41802 -18.34671 -18.13944 -17.36704 -16.30390 -15.98379 -15.89374 -15.25439 -14.95032 -14.76462 -14.47144 -14.38541 -14.10069 -13.98536 -13.74510 -13.70881 -13.50650 -13.47756 -13.17991 -13.08322 -12.66662 -12.59394 -11.98103 -11.89797 -11.40356 -11.28804 -11.04417 -11.02173 -10.39771 -10.04278 -9.96523 -9.57702 -9.30380 -9.03084 -8.91849 -8.12039 -7.89335 -7.38379 -5.14249 0.84258 1.18964 2.06529 2.37977 2.72141 3.40493 3.41849 3.53224 3.76090 3.80174 4.04232 4.07812 4.17511 4.36014 4.49098 4.61593 4.81003 4.98735 5.11140 5.19991 5.29283 5.41378 5.53605 5.56697 5.69664 5.80805 5.91040 6.02966 6.14222 6.18364 6.39139 6.54840 6.61739 6.76107 7.05585 7.12322 7.50326 7.67063 7.82426 8.20215 8.60627 9.08209 9.67924 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.006224 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.080821 B = 4497.429128 C = 6312.100879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.043 3.957 3 Si 1.135 2.865 4 H -0.322 1.322 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.198 3.802 10 C -0.036 4.036 11 N -0.416 5.416 12 C -0.109 4.109 13 C 0.163 3.837 14 C -0.017 4.017 15 C -0.048 4.048 16 C -0.189 4.189 17 C 0.510 3.490 18 F -0.175 7.175 19 F -0.179 7.179 20 F -0.176 7.176 21 C -0.074 4.074 22 C -0.100 4.100 23 C -0.040 4.040 24 C 0.112 3.888 25 O -0.572 6.572 26 N -0.532 5.532 27 H 0.289 0.711 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 5.422 2.952 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.181 4.181 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.197 1.197 6 H -0.216 1.216 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.074 3.926 10 C -0.209 4.209 11 N -0.127 5.127 12 C -0.265 4.265 13 C 0.019 3.981 14 C -0.018 4.018 15 C -0.066 4.066 16 C -0.190 4.190 17 C 0.455 3.545 18 F -0.157 7.157 19 F -0.161 7.161 20 F -0.157 7.157 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.041 4.041 24 C 0.035 3.965 25 O -0.378 6.378 26 N -0.254 5.254 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 12.197 7.529 2.675 14.581 hybrid contribution -0.164 -2.241 -0.067 2.248 sum 12.033 5.288 2.609 13.400 Atomic orbital electron populations 1.70636 1.08155 1.33323 1.28152 1.27833 0.95313 1.06201 0.88772 0.82208 0.71336 0.69844 0.79776 1.25432 1.19722 1.21605 1.20878 0.90189 0.96824 1.39601 0.89030 1.19429 0.94885 0.88175 0.90150 1.23196 0.89877 0.98244 1.09590 1.67727 1.09733 1.28857 1.06339 1.22421 0.99014 0.88115 1.16925 1.20144 0.90850 0.91849 0.95268 1.18260 0.95715 0.92704 0.95159 1.21079 0.96591 0.90216 0.98747 1.19867 1.04407 0.93954 1.00805 1.18286 0.74049 0.83109 0.79016 1.93230 1.59971 1.76892 1.85585 1.93166 1.48970 1.77643 1.96292 1.93205 1.91512 1.89393 1.41583 1.20939 0.95688 0.99521 0.93066 1.20838 1.00068 0.91334 0.99553 1.19884 0.94551 0.95610 0.94103 1.21117 0.93722 0.93841 0.87828 1.86358 1.68044 1.41689 1.41758 1.67603 1.06533 1.28342 1.22912 0.89987 0.84064 0.84580 0.84042 0.84671 0.83701 0.91520 0.90627 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.01 13.65 55.55 0.76 -19.25 16 2 C 0.04 1.10 5.52 -17.34 -0.10 1.00 16 3 Si 1.14 27.22 24.87 -169.99 -4.23 23.00 16 4 H -0.32 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.27 -6.52 6.60 56.52 0.37 -6.14 16 6 H -0.29 -6.77 6.33 56.52 0.36 -6.42 16 7 C -0.44 -11.08 9.59 -37.73 -0.36 -11.45 16 8 H 0.09 2.22 8.05 -52.49 -0.42 1.80 16 9 C 0.20 4.81 6.39 -84.84 -0.54 4.27 16 10 C -0.04 -0.81 10.98 -16.54 -0.18 -0.99 16 11 N -0.42 -8.97 10.47 -12.05 -0.13 -9.10 16 12 C -0.11 -2.17 9.46 -16.73 -0.16 -2.33 16 13 C 0.16 3.43 5.80 -82.77 -0.48 2.95 16 14 C -0.02 -0.31 5.59 -104.90 -0.59 -0.89 16 15 C -0.05 -0.85 8.72 -39.24 -0.34 -1.19 16 16 C -0.19 -2.90 5.45 -104.67 -0.57 -3.47 16 17 C 0.51 7.45 3.36 36.00 0.12 7.57 16 18 F -0.18 -2.67 17.30 2.25 0.04 -2.63 16 19 F -0.18 -2.35 16.45 2.25 0.04 -2.31 16 20 F -0.18 -2.72 16.46 2.25 0.04 -2.68 16 21 C -0.07 -0.97 9.39 -39.51 -0.37 -1.34 16 22 C -0.10 -1.35 9.37 -39.63 -0.37 -1.72 16 23 C -0.04 -0.62 5.87 -104.28 -0.61 -1.24 16 24 C 0.11 1.50 5.89 36.00 0.21 1.71 16 25 O -0.57 -6.38 12.16 -35.23 -0.43 -6.81 16 26 N -0.53 -12.71 4.60 -7.51 -0.03 -12.74 16 27 H 0.29 6.93 8.72 -40.82 -0.36 6.58 16 28 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 29 H 0.14 2.31 6.40 -52.49 -0.34 1.97 16 30 H 0.14 2.71 6.37 -52.48 -0.33 2.38 16 31 H 0.14 1.40 7.59 -52.49 -0.40 1.00 16 32 H 0.15 1.70 7.02 -52.48 -0.37 1.33 16 33 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 34 H 0.08 0.95 5.99 -51.93 -0.31 0.64 16 35 H 0.38 2.50 9.12 45.56 0.42 2.92 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -27.78 312.73 -5.39 -33.17 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -1.82 Total: 1.75 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.34 Total: -7.11 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.60 Total: -41.09 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.43 Total: -6.81 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.11 Total: -7.62 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -4.23 Total: 23.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.78 -5.39 -33.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236049077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.306 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds