Wall clock time and date at job start Tue Mar 31 2020 14:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48500 * 109.46952 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46610 * 120.00317 * 3 2 1 6 6 H 1.48497 * 109.47090 * 240.00435 * 3 2 1 7 7 C 1.40048 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99484 * 4.94838 * 7 2 1 9 9 C 1.41323 * 119.99817 * 184.95112 * 7 2 1 10 10 C 1.40866 * 120.14351 * 184.84310 * 9 7 2 11 11 N 1.31863 * 119.95879 * 179.72778 * 10 9 7 12 12 C 1.32203 * 120.28188 * 0.55092 * 11 10 9 13 13 C 1.39994 * 120.30214 * 359.72601 * 12 11 10 14 14 C 1.48292 * 119.98679 * 180.02562 * 13 12 11 15 15 C 1.39412 * 120.13040 * 128.81470 * 14 13 12 16 16 C 1.37980 * 119.87724 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.93665 * 179.97438 * 16 15 14 18 18 F 1.39894 * 109.47474 * 89.99764 * 17 16 15 19 19 F 1.39901 * 109.46800 * 210.00047 * 17 16 15 20 20 F 1.39906 * 109.47131 * 329.99375 * 17 16 15 21 21 C 1.38360 * 120.12407 * 359.97438 * 16 15 14 22 22 C 1.38308 * 120.25271 * 359.97438 * 21 16 15 23 23 C 1.38023 * 120.13133 * 359.76683 * 22 21 16 24 24 C 1.50698 * 120.06835 * 180.25132 * 23 22 21 25 25 O 1.42896 * 109.47261 * 5.87147 * 24 23 22 26 26 N 1.32547 * 120.02913 * 359.97438 * 13 12 11 27 27 H 0.96999 * 119.99751 * 174.99640 * 1 2 3 28 28 H 1.07997 * 120.02243 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.85188 * 179.69962 * 12 11 10 30 30 H 1.08007 * 120.06286 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.86760 * 179.97438 * 21 16 15 32 32 H 1.08004 * 119.93447 * 180.02562 * 22 21 16 33 33 H 1.09004 * 109.46849 * 125.86576 * 24 23 22 34 34 H 1.08997 * 109.47288 * 245.86459 * 24 23 22 35 35 H 0.96693 * 114.00388 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 0.0006 5 1 3.0951 1.6963 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 1.4706 -2.1463 -0.0816 9 6 3.4169 -1.2151 0.1051 10 6 4.1320 -2.4244 0.0026 11 7 5.4473 -2.4216 0.0963 12 6 6.0989 -1.2890 0.2972 13 6 5.3992 -0.0814 0.4066 14 6 6.1372 1.1850 0.6314 15 6 5.9018 2.2873 -0.1891 16 6 6.5918 3.4629 0.0244 17 6 6.3388 4.6550 -0.8620 18 9 5.3114 5.4321 -0.3166 19 9 7.5048 5.4225 -0.9554 20 9 5.9656 4.2171 -2.1373 21 6 7.5156 3.5493 1.0508 22 6 7.7525 2.4594 1.8686 23 6 7.0643 1.2799 1.6678 24 6 7.3195 0.0950 2.5633 25 8 8.2046 0.4770 3.6182 26 7 4.0775 -0.0693 0.3084 27 1 -0.4850 -0.8369 -0.0733 28 1 3.6037 -3.3528 -0.1567 29 1 7.1759 -1.2954 0.3777 30 1 5.1812 2.2209 -0.9909 31 1 8.0537 4.4714 1.2139 32 1 8.4745 2.5327 2.6686 33 1 6.3763 -0.2496 2.9874 34 1 7.7719 -0.7086 1.9824 35 1 8.4131 -0.2379 4.2349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236049077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:43 Heat of formation + Delta-G solvation = -169.270233 kcal Electronic energy + Delta-G solvation = -27291.270323 eV Core-core repulsion = 22837.603044 eV Total energy + Delta-G solvation = -4453.667279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.24661 -48.75860 -48.70665 -41.71483 -40.35828 -37.69164 -36.29245 -35.03922 -34.06128 -32.95391 -31.05768 -28.80431 -27.83716 -25.87879 -25.37492 -23.89712 -23.03617 -21.95053 -20.64922 -19.57846 -19.51295 -19.42710 -18.37965 -18.00296 -17.60917 -17.02509 -16.67570 -16.22024 -15.99177 -15.73559 -15.59717 -15.47055 -15.18148 -15.13968 -15.11730 -14.93181 -14.86657 -14.62886 -14.40926 -14.20972 -13.82984 -13.46694 -13.29200 -13.11851 -12.96913 -12.42648 -12.20857 -11.91536 -11.73480 -11.46919 -11.33080 -11.13718 -10.52015 -10.08044 -9.80019 -9.67976 -9.19040 -7.01650 -0.40317 -0.10400 0.42165 0.63257 1.46749 1.55158 1.55708 1.88047 2.24113 2.27707 2.50344 2.60427 2.89724 3.07223 3.19852 3.32340 3.38585 3.72582 3.78968 3.83065 3.97817 4.07186 4.19505 4.31310 4.39046 4.46459 4.60522 4.66948 4.78814 4.82406 5.04476 5.04860 5.22805 5.32829 5.35109 5.61258 5.80466 6.01766 6.34478 6.83523 6.84888 7.31723 7.78696 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.006224 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.080821 B = 4497.429128 C = 6312.100879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.024 3.976 3 Si 1.159 2.841 4 H -0.327 1.327 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.474 4.474 8 H 0.088 0.912 9 C 0.189 3.811 10 C -0.047 4.047 11 N -0.419 5.419 12 C -0.085 4.085 13 C 0.157 3.843 14 C -0.046 4.046 15 C -0.065 4.065 16 C -0.195 4.195 17 C 0.513 3.487 18 F -0.180 7.180 19 F -0.167 7.167 20 F -0.184 7.184 21 C -0.055 4.055 22 C -0.090 4.090 23 C -0.041 4.041 24 C 0.119 3.881 25 O -0.572 6.572 26 N -0.552 5.552 27 H 0.291 0.709 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.118 0.882 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.020 6.213 4.143 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.197 4.197 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.507 4.507 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.217 4.217 11 N -0.130 5.130 12 C -0.242 4.242 13 C 0.014 3.986 14 C -0.048 4.048 15 C -0.084 4.084 16 C -0.196 4.196 17 C 0.459 3.541 18 F -0.161 7.161 19 F -0.148 7.148 20 F -0.165 7.165 21 C -0.073 4.073 22 C -0.108 4.108 23 C -0.042 4.042 24 C 0.042 3.958 25 O -0.382 6.382 26 N -0.275 5.275 27 H 0.102 0.898 28 H 0.174 0.826 29 H 0.191 0.809 30 H 0.136 0.864 31 H 0.189 0.811 32 H 0.189 0.811 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.673 8.290 3.875 18.148 hybrid contribution -0.891 -2.457 -0.366 2.639 sum 14.781 5.833 3.509 16.273 Atomic orbital electron populations 1.70628 1.08323 1.33526 1.30605 1.28174 0.95587 1.07236 0.88674 0.81851 0.70586 0.68937 0.79378 1.25952 1.20296 1.21811 1.20834 0.90837 0.96576 1.42469 0.89408 1.19597 0.94935 0.89137 0.89965 1.23379 0.90313 0.98264 1.09694 1.67835 1.09260 1.29507 1.06430 1.23075 1.00601 0.87285 1.13249 1.20655 0.89996 0.93810 0.94167 1.18205 0.97427 0.91814 0.97316 1.20941 0.97199 0.91497 0.98788 1.19943 1.04795 0.93170 1.01695 1.18202 0.74252 0.83050 0.78597 1.93224 1.60322 1.76965 1.85615 1.93190 1.48109 1.77268 1.96210 1.93192 1.91651 1.89531 1.42167 1.21371 0.94032 1.00759 0.91119 1.21157 0.99620 0.90300 0.99686 1.20124 0.93587 0.97199 0.93294 1.20917 0.93513 0.93150 0.88252 1.86301 1.67183 1.43037 1.41665 1.67503 1.08287 1.28527 1.23155 0.89791 0.82557 0.80938 0.86440 0.81121 0.81052 0.93302 0.89541 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.82 13.65 21.84 0.30 -42.52 16 2 C 0.02 1.27 5.52 85.30 0.47 1.74 16 3 Si 1.16 56.89 24.87 68.60 1.71 58.60 16 4 H -0.33 -15.95 7.11 99.48 0.71 -15.24 16 5 H -0.28 -13.55 6.60 99.48 0.66 -12.89 16 6 H -0.29 -14.06 6.33 99.48 0.63 -13.44 16 7 C -0.47 -24.54 9.59 23.47 0.23 -24.32 16 8 H 0.09 4.45 8.05 -2.91 -0.02 4.43 16 9 C 0.19 9.32 6.39 40.24 0.26 9.58 16 10 C -0.05 -2.07 10.98 85.33 0.94 -1.14 16 11 N -0.42 -17.35 10.47 -192.05 -2.01 -19.36 16 12 C -0.09 -3.20 9.46 85.06 0.80 -2.39 16 13 C 0.16 6.44 5.80 42.14 0.24 6.68 16 14 C -0.05 -1.61 5.59 -20.04 -0.11 -1.73 16 15 C -0.07 -2.28 8.72 22.49 0.20 -2.09 16 16 C -0.19 -5.55 5.45 -19.90 -0.11 -5.66 16 17 C 0.51 14.10 3.36 71.23 0.24 14.34 16 18 F -0.18 -5.22 17.30 44.97 0.78 -4.44 16 19 F -0.17 -3.88 16.45 44.97 0.74 -3.14 16 20 F -0.18 -5.59 16.46 44.97 0.74 -4.85 16 21 C -0.05 -1.22 9.39 22.32 0.21 -1.01 16 22 C -0.09 -2.03 9.37 22.24 0.21 -1.82 16 23 C -0.04 -1.14 5.87 -19.64 -0.12 -1.26 16 24 C 0.12 2.80 5.89 71.24 0.42 3.21 16 25 O -0.57 -10.29 12.16 -148.98 -1.81 -12.10 16 26 N -0.55 -26.53 4.60 -177.66 -0.82 -27.34 16 27 H 0.29 14.55 8.72 -92.71 -0.81 13.75 16 28 H 0.16 6.31 8.06 -2.91 -0.02 6.28 16 29 H 0.17 5.18 6.40 -2.91 -0.02 5.16 16 30 H 0.12 4.61 6.37 -2.91 -0.02 4.59 16 31 H 0.17 2.59 7.59 -2.91 -0.02 2.57 16 32 H 0.17 3.04 7.02 -2.91 -0.02 3.02 16 33 H 0.05 1.34 8.02 -2.39 -0.02 1.32 16 34 H 0.09 1.82 5.99 -2.39 -0.01 1.81 16 35 H 0.41 3.55 9.12 -74.06 -0.68 2.88 16 Total: -1.00 -60.62 312.73 3.85 -56.77 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.35 Total: 4.23 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 3.88 Total: -5.85 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.53 Total: -89.22 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.81 Total: -12.10 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 2.26 Total: -12.44 kcal Atomic # 14 Polarization: 56.89 SS G_CDS: 1.71 Total: 58.60 kcal Total: -60.62 3.85 -56.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236049077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.496 kcal (2) G-P(sol) polarization free energy of solvation -60.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds