Wall clock time and date at job start Tue Mar 31 2020 14:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86793 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47192 * 274.97997 * 3 2 1 5 5 H 1.48496 * 109.47467 * 34.98404 * 3 2 1 6 6 H 1.48509 * 109.47174 * 154.98494 * 3 2 1 7 7 C 1.40148 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99830 * 186.34378 * 7 2 1 9 9 C 1.41091 * 120.00030 * 6.33405 * 7 2 1 10 10 N 1.33652 * 119.13111 * 173.62149 * 9 7 2 11 11 C 1.31580 * 120.82773 * 180.02562 * 10 9 7 12 12 C 1.40428 * 119.09786 * 0.02562 * 11 10 9 13 13 C 1.47935 * 120.79665 * 179.97438 * 12 11 10 14 14 C 1.39678 * 120.14428 * 309.98260 * 13 12 11 15 15 C 1.37902 * 119.84901 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.92644 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.46702 * 90.00046 * 16 15 14 18 18 F 1.39899 * 109.46955 * 210.00217 * 16 15 14 19 19 F 1.39897 * 109.47025 * 330.00273 * 16 15 14 20 20 C 1.38436 * 120.14401 * 359.72665 * 15 14 13 21 21 C 1.38379 * 120.30127 * 0.54956 * 20 15 14 22 22 C 1.37941 * 120.14729 * 359.45142 * 21 20 15 23 23 C 1.50704 * 120.07504 * 180.25605 * 22 21 20 24 24 O 1.42900 * 109.47160 * 359.97438 * 23 22 21 25 25 C 1.40437 * 118.41690 * 0.25410 * 12 11 10 26 26 N 1.31588 * 119.09011 * 359.48154 * 25 12 11 27 27 H 0.97006 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.45435 * 180.02562 * 11 10 9 29 29 H 1.07997 * 120.07906 * 0.04221 * 14 13 12 30 30 H 1.08005 * 119.84561 * 180.29844 * 20 15 14 31 31 H 1.07996 * 119.92453 * 179.72419 * 21 20 15 32 32 H 1.08993 * 109.47456 * 119.99593 * 23 22 21 33 33 H 1.09004 * 109.46832 * 240.00027 * 23 22 21 34 34 H 0.96695 * 114.00102 * 180.02562 * 24 23 22 35 35 H 1.07999 * 120.45457 * 179.74722 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5921 7 6 2.0072 -1.2138 0.0005 8 1 3.0822 -1.2166 0.1039 9 6 1.3081 -2.4319 -0.1337 10 7 1.9998 -3.5685 -0.2603 11 6 1.3820 -4.7232 -0.3881 12 6 -0.0221 -4.7498 -0.3908 13 6 -0.7551 -6.0269 -0.5327 14 6 -0.4287 -6.9123 -1.5625 15 6 -1.1163 -8.1009 -1.6895 16 6 -0.7660 -9.0572 -2.8002 17 9 0.2203 -9.9451 -2.3573 18 9 -1.9067 -9.7759 -3.1739 19 9 -0.2865 -8.3385 -3.9005 20 6 -2.1243 -8.4198 -0.7957 21 6 -2.4565 -7.5446 0.2233 22 6 -1.7767 -6.3524 0.3617 23 6 -2.1360 -5.4030 1.4756 24 8 -3.2033 -5.9568 2.2478 25 6 -0.7138 -3.5345 -0.2615 26 7 -0.0283 -2.4187 -0.1325 27 1 -0.4850 0.8401 -0.0004 28 1 1.9469 -5.6380 -0.4895 29 1 0.3606 -6.6669 -2.2576 30 1 -2.6565 -9.3542 -0.8967 31 1 -3.2469 -7.7976 0.9145 32 1 -1.2671 -5.2476 2.1151 33 1 -2.4511 -4.4491 1.0525 34 1 -3.4874 -5.3978 2.9839 35 1 -1.7936 -3.5164 -0.2636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236057737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:47 Heat of formation + Delta-G solvation = -134.372062 kcal Electronic energy + Delta-G solvation = -26457.398356 eV Core-core repulsion = 22005.244375 eV Total energy + Delta-G solvation = -4452.153981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.07830 -47.59758 -47.54002 -39.80897 -38.58110 -36.58490 -34.21276 -32.85735 -31.96985 -31.62608 -29.27788 -27.48580 -26.34168 -24.27430 -23.25533 -22.57560 -21.45669 -20.58217 -18.41204 -18.32763 -18.17832 -17.95175 -17.22256 -16.23858 -15.72196 -15.29685 -14.95058 -14.86331 -14.58836 -14.41465 -14.35020 -14.17919 -14.00658 -13.78527 -13.71027 -13.35901 -13.09619 -13.05073 -12.87907 -12.53374 -12.19006 -11.92132 -11.49355 -11.46086 -11.14650 -11.01208 -10.94276 -10.46297 -10.22563 -9.72466 -9.38078 -9.34378 -8.97055 -8.76039 -7.85325 -7.45839 -6.80032 -4.95767 1.07502 1.42062 2.37524 2.76526 2.78820 2.92035 2.95927 2.97493 3.69048 3.70182 3.83353 4.13977 4.23724 4.40715 4.53474 5.00577 5.07755 5.19013 5.41622 5.50041 5.57653 5.62377 5.68630 5.75514 5.82009 5.95769 6.07563 6.21204 6.37078 6.37827 6.58644 6.74507 6.87308 6.99238 7.09580 7.40723 7.65269 7.92335 8.23643 8.31603 8.86518 9.85275 10.02554 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003365 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.107254 B = 8319.448544 C = 9452.256771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.061 3.939 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.377 4.377 8 H 0.097 0.903 9 C 0.381 3.619 10 N -0.591 5.591 11 C 0.193 3.807 12 C -0.343 4.343 13 C 0.033 3.967 14 C -0.081 4.081 15 C -0.180 4.180 16 C 0.509 3.491 17 F -0.180 7.180 18 F -0.181 7.181 19 F -0.178 7.178 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.068 4.068 23 C 0.115 3.885 24 O -0.576 6.576 25 C 0.181 3.819 26 N -0.506 5.506 27 H 0.280 0.720 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.382 0.618 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -9.764 0.293 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.167 4.167 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.410 4.410 8 H 0.115 0.885 9 C 0.148 3.852 10 N -0.309 5.309 11 C 0.018 3.982 12 C -0.353 4.353 13 C 0.031 3.969 14 C -0.099 4.099 15 C -0.182 4.182 16 C 0.455 3.545 17 F -0.161 7.161 18 F -0.163 7.163 19 F -0.159 7.159 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.069 4.069 23 C 0.038 3.962 24 O -0.382 6.382 25 C 0.004 3.996 26 N -0.222 5.222 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.945 -9.060 -0.045 10.322 hybrid contribution -0.195 0.007 -0.043 0.200 sum -5.140 -9.054 -0.087 10.411 Atomic orbital electron populations 1.70104 1.07509 1.28823 1.25290 1.26224 0.95122 1.01811 0.93573 0.86051 0.80520 0.79431 0.79474 1.19063 1.19734 1.18027 1.19525 0.95553 0.87956 1.37998 0.88463 1.19950 0.85810 0.90868 0.88531 1.68677 1.40567 0.98691 1.22988 1.22643 0.90097 0.95762 0.89739 1.19597 0.95343 0.92818 1.27550 1.18343 0.93410 0.93219 0.91914 1.21009 0.99181 0.92055 0.97667 1.19815 1.03067 0.96795 0.98475 1.18405 0.74262 0.79770 0.82104 1.93207 1.63162 1.70458 1.89314 1.93161 1.50983 1.79742 1.92391 1.93188 1.88523 1.77800 1.56425 1.20795 0.96415 1.00087 0.94648 1.20810 0.99767 0.93118 0.97467 1.20016 0.96177 0.95282 0.95417 1.21066 0.89508 0.94497 0.91086 1.86350 1.54486 1.50275 1.47041 1.23027 0.98846 0.87820 0.89925 1.69366 1.08373 1.26166 1.18265 0.90880 0.85160 0.84963 0.85470 0.84468 0.91746 0.91145 0.77090 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.89 11.43 55.56 0.64 -16.25 16 2 C 0.06 1.44 5.49 -17.34 -0.10 1.34 16 3 Si 0.92 17.12 29.56 -169.99 -5.03 12.09 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.38 -9.61 9.35 -37.78 -0.35 -9.96 16 8 H 0.10 2.38 7.86 -52.49 -0.41 1.97 16 9 C 0.38 10.00 7.35 -158.16 -1.16 8.84 16 10 N -0.59 -14.67 10.34 -12.41 -0.13 -14.79 16 11 C 0.19 4.12 10.85 -16.84 -0.18 3.94 16 12 C -0.34 -6.88 5.13 -104.27 -0.53 -7.41 16 13 C 0.03 0.57 5.52 -104.87 -0.58 -0.01 16 14 C -0.08 -1.29 8.91 -39.17 -0.35 -1.64 16 15 C -0.18 -2.62 5.45 -104.67 -0.57 -3.19 16 16 C 0.51 6.99 3.36 36.01 0.12 7.11 16 17 F -0.18 -2.49 17.30 2.25 0.04 -2.45 16 18 F -0.18 -2.39 16.46 2.25 0.04 -2.35 16 19 F -0.18 -2.56 16.45 2.25 0.04 -2.52 16 20 C -0.10 -1.36 9.40 -39.46 -0.37 -1.73 16 21 C -0.09 -1.32 9.37 -39.64 -0.37 -1.69 16 22 C -0.07 -1.07 5.89 -104.21 -0.61 -1.69 16 23 C 0.12 1.67 6.04 36.01 0.22 1.89 16 24 O -0.58 -7.12 12.14 -35.23 -0.43 -7.54 16 25 C 0.18 3.92 9.53 -16.83 -0.16 3.76 16 26 N -0.51 -12.83 7.86 -12.41 -0.10 -12.93 16 27 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 28 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.13 2.07 7.60 -52.49 -0.40 1.67 16 30 H 0.13 1.43 7.60 -52.48 -0.40 1.03 16 31 H 0.14 1.78 7.00 -52.49 -0.37 1.41 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.04 5.58 -51.93 -0.29 0.75 16 34 H 0.38 3.03 9.12 45.56 0.42 3.44 16 35 H 0.13 2.49 6.31 -52.49 -0.33 2.16 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -28.12 320.04 -6.87 -34.99 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -1.76 Total: 7.38 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -5.00 Total: -0.45 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.41 Total: -43.97 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.43 Total: -7.54 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.32 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.12 -6.87 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236057737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.382 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds