Wall clock time and date at job start Tue Mar 31 2020 14:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86793 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47192 * 274.97997 * 3 2 1 5 5 H 1.48496 * 109.47467 * 34.98404 * 3 2 1 6 6 H 1.48509 * 109.47174 * 154.98494 * 3 2 1 7 7 C 1.40148 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99830 * 186.34378 * 7 2 1 9 9 C 1.41091 * 120.00030 * 6.33405 * 7 2 1 10 10 N 1.33652 * 119.13111 * 173.62149 * 9 7 2 11 11 C 1.31580 * 120.82773 * 180.02562 * 10 9 7 12 12 C 1.40428 * 119.09786 * 0.02562 * 11 10 9 13 13 C 1.47935 * 120.79665 * 179.97438 * 12 11 10 14 14 C 1.39678 * 120.14428 * 309.98260 * 13 12 11 15 15 C 1.37902 * 119.84901 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.92644 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.46702 * 90.00046 * 16 15 14 18 18 F 1.39899 * 109.46955 * 210.00217 * 16 15 14 19 19 F 1.39897 * 109.47025 * 330.00273 * 16 15 14 20 20 C 1.38436 * 120.14401 * 359.72665 * 15 14 13 21 21 C 1.38379 * 120.30127 * 0.54956 * 20 15 14 22 22 C 1.37941 * 120.14729 * 359.45142 * 21 20 15 23 23 C 1.50704 * 120.07504 * 180.25605 * 22 21 20 24 24 O 1.42900 * 109.47160 * 359.97438 * 23 22 21 25 25 C 1.40437 * 118.41690 * 0.25410 * 12 11 10 26 26 N 1.31588 * 119.09011 * 359.48154 * 25 12 11 27 27 H 0.97006 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.45435 * 180.02562 * 11 10 9 29 29 H 1.07997 * 120.07906 * 0.04221 * 14 13 12 30 30 H 1.08005 * 119.84561 * 180.29844 * 20 15 14 31 31 H 1.07996 * 119.92453 * 179.72419 * 21 20 15 32 32 H 1.08993 * 109.47456 * 119.99593 * 23 22 21 33 33 H 1.09004 * 109.46832 * 240.00027 * 23 22 21 34 34 H 0.96695 * 114.00102 * 180.02562 * 24 23 22 35 35 H 1.07999 * 120.45457 * 179.74722 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5921 7 6 2.0072 -1.2138 0.0005 8 1 3.0822 -1.2166 0.1039 9 6 1.3081 -2.4319 -0.1337 10 7 1.9998 -3.5685 -0.2603 11 6 1.3820 -4.7232 -0.3881 12 6 -0.0221 -4.7498 -0.3908 13 6 -0.7551 -6.0269 -0.5327 14 6 -0.4287 -6.9123 -1.5625 15 6 -1.1163 -8.1009 -1.6895 16 6 -0.7660 -9.0572 -2.8002 17 9 0.2203 -9.9451 -2.3573 18 9 -1.9067 -9.7759 -3.1739 19 9 -0.2865 -8.3385 -3.9005 20 6 -2.1243 -8.4198 -0.7957 21 6 -2.4565 -7.5446 0.2233 22 6 -1.7767 -6.3524 0.3617 23 6 -2.1360 -5.4030 1.4756 24 8 -3.2033 -5.9568 2.2478 25 6 -0.7138 -3.5345 -0.2615 26 7 -0.0283 -2.4187 -0.1325 27 1 -0.4850 0.8401 -0.0004 28 1 1.9469 -5.6380 -0.4895 29 1 0.3606 -6.6669 -2.2576 30 1 -2.6565 -9.3542 -0.8967 31 1 -3.2469 -7.7976 0.9145 32 1 -1.2671 -5.2476 2.1151 33 1 -2.4511 -4.4491 1.0525 34 1 -3.4874 -5.3978 2.9839 35 1 -1.7936 -3.5164 -0.2636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236057737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:46 Heat of formation + Delta-G solvation = -151.045653 kcal Electronic energy + Delta-G solvation = -26458.121377 eV Core-core repulsion = 22005.244375 eV Total energy + Delta-G solvation = -4452.877002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.17655 -48.69175 -48.63910 -41.28729 -40.09758 -37.63734 -35.90295 -34.30978 -33.71572 -32.89856 -30.85330 -28.65695 -27.99775 -25.43870 -24.86051 -24.19330 -22.85944 -21.84326 -19.87791 -19.50763 -19.43930 -19.21162 -18.38453 -17.86593 -17.03416 -16.86070 -16.37410 -16.12311 -15.80060 -15.71294 -15.52354 -15.36943 -15.10216 -14.90158 -14.84749 -14.80409 -14.59220 -14.52146 -14.15536 -14.00161 -13.54465 -13.13717 -13.11579 -12.98325 -12.69801 -12.34613 -12.20725 -11.96050 -11.40073 -11.30117 -11.18105 -11.04389 -10.42954 -9.95325 -9.51902 -9.14257 -8.52314 -6.79012 -0.16228 0.13171 0.77418 1.01848 1.40251 1.49808 1.55865 1.64998 2.17268 2.44281 2.67561 2.73228 3.02887 3.19840 3.42272 3.79243 3.84086 3.90007 3.90595 3.95075 3.99803 4.24918 4.34581 4.35994 4.48238 4.60411 4.73767 4.91003 4.96659 5.07264 5.17215 5.20833 5.32258 5.59336 5.71048 5.82023 6.07969 6.43066 6.53315 6.83004 7.09989 8.13037 8.27002 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003365 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.107254 B = 8319.448544 C = 9452.256771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.025 3.975 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.420 4.420 8 H 0.092 0.908 9 C 0.357 3.643 10 N -0.618 5.618 11 C 0.178 3.822 12 C -0.317 4.317 13 C 0.008 3.992 14 C -0.081 4.081 15 C -0.185 4.185 16 C 0.515 3.485 17 F -0.179 7.179 18 F -0.175 7.175 19 F -0.183 7.183 20 C -0.083 4.083 21 C -0.091 4.091 22 C -0.070 4.070 23 C 0.122 3.878 24 O -0.576 6.576 25 C 0.170 3.830 26 N -0.535 5.535 27 H 0.289 0.711 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -11.155 0.374 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.200 4.200 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.454 4.454 8 H 0.110 0.890 9 C 0.123 3.877 10 N -0.338 5.338 11 C 0.005 3.995 12 C -0.326 4.326 13 C 0.006 3.994 14 C -0.100 4.100 15 C -0.186 4.186 16 C 0.461 3.539 17 F -0.161 7.161 18 F -0.156 7.156 19 F -0.164 7.164 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.070 4.070 23 C 0.045 3.955 24 O -0.384 6.384 25 C -0.005 4.005 26 N -0.252 5.252 27 H 0.100 0.900 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.252 0.748 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.236 -10.514 0.047 12.224 hybrid contribution 0.032 0.115 -0.066 0.137 sum -6.203 -10.399 -0.020 12.109 Atomic orbital electron populations 1.70146 1.08924 1.30231 1.26107 1.27077 0.95904 1.04615 0.92429 0.84941 0.79009 0.74719 0.79576 1.18681 1.18361 1.17900 1.19784 0.95622 0.89181 1.40775 0.88999 1.20304 0.86528 0.91659 0.89255 1.68680 1.41330 0.99421 1.24326 1.23149 0.91215 0.95788 0.89330 1.19767 0.94965 0.93776 1.24143 1.18173 0.94810 0.92556 0.93825 1.20983 0.99277 0.92426 0.97296 1.19894 1.03220 0.96418 0.99060 1.18227 0.74380 0.79597 0.81689 1.93214 1.63196 1.70373 1.89289 1.93177 1.50585 1.79528 1.92303 1.93185 1.88615 1.77975 1.56648 1.21169 0.95145 1.00687 0.93130 1.21014 0.99766 0.92313 0.97814 1.20165 0.95490 0.96139 0.95245 1.20839 0.89692 0.94084 0.90888 1.86296 1.53545 1.50814 1.47781 1.23430 0.99789 0.87782 0.89498 1.69327 1.08288 1.27868 1.19714 0.90035 0.82569 0.85206 0.82504 0.82706 0.93016 0.91725 0.74756 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.51 11.43 21.86 0.25 -36.26 16 2 C 0.02 1.20 5.49 85.33 0.47 1.67 16 3 Si 1.00 35.62 29.56 68.60 2.03 37.65 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 7 C -0.42 -22.38 9.35 23.43 0.22 -22.16 16 8 H 0.09 4.75 7.86 -2.91 -0.02 4.73 16 9 C 0.36 19.55 7.35 134.91 0.99 20.54 16 10 N -0.62 -31.80 10.34 -193.17 -2.00 -33.79 16 11 C 0.18 7.74 10.85 85.26 0.93 8.66 16 12 C -0.32 -12.76 5.13 -19.64 -0.10 -12.86 16 13 C 0.01 0.27 5.52 -20.02 -0.11 0.16 16 14 C -0.08 -2.47 8.91 22.54 0.20 -2.27 16 15 C -0.18 -4.87 5.45 -19.90 -0.11 -4.98 16 16 C 0.52 12.82 3.36 71.24 0.24 13.06 16 17 F -0.18 -4.51 17.30 44.97 0.78 -3.74 16 18 F -0.17 -4.04 16.46 44.97 0.74 -3.30 16 19 F -0.18 -4.92 16.45 44.97 0.74 -4.18 16 20 C -0.08 -1.93 9.40 22.35 0.21 -1.72 16 21 C -0.09 -2.27 9.37 22.23 0.21 -2.06 16 22 C -0.07 -2.05 5.89 -19.60 -0.12 -2.17 16 23 C 0.12 3.38 6.04 71.24 0.43 3.81 16 24 O -0.58 -12.80 12.14 -148.98 -1.81 -14.61 16 25 C 0.17 7.50 9.53 85.27 0.81 8.31 16 26 N -0.54 -28.11 7.86 -193.16 -1.52 -29.63 16 27 H 0.29 12.70 8.29 -92.70 -0.77 11.94 16 28 H 0.16 5.76 8.06 -2.91 -0.02 5.73 16 29 H 0.13 3.95 7.60 -2.91 -0.02 3.93 16 30 H 0.16 2.75 7.60 -2.91 -0.02 2.72 16 31 H 0.16 3.37 7.00 -2.91 -0.02 3.35 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.86 5.58 -2.38 -0.01 1.85 16 34 H 0.40 5.41 9.12 -74.06 -0.68 4.74 16 35 H 0.15 5.79 6.31 -2.91 -0.02 5.77 16 Total: -1.00 -62.08 320.04 4.00 -58.08 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.51 Total: 21.79 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 4.27 Total: 7.99 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.26 Total: -99.68 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.81 Total: -14.61 kcal Atomic # 9 Polarization: -13.47 SS G_CDS: 2.26 Total: -11.22 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -62.08 4.00 -58.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236057737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.964 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds