Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40065 * 120.05801 * 120.00327 * 3 2 1 5 5 F 1.35096 * 120.03046 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.93663 * 179.97438 * 4 3 2 7 7 C 1.39559 * 120.06568 * 359.97438 * 6 4 3 8 8 C 1.48079 * 119.94725 * 179.97438 * 7 6 4 9 9 C 1.39234 * 120.28559 * 236.58496 * 8 7 6 10 10 C 1.38297 * 120.09475 * 179.97438 * 9 8 7 11 11 C 1.38070 * 120.78116 * 0.02562 * 10 9 8 12 12 C 1.39111 * 120.25257 * 359.97438 * 11 10 9 13 13 N 1.38187 * 132.74185 * 180.02562 * 12 11 10 14 14 H 0.97003 * 124.70297 * 0.02562 * 13 12 11 15 15 C 1.35566 * 110.59718 * 179.97438 * 13 12 11 16 16 C 1.39009 * 109.24974 * 359.97438 * 15 13 12 17 17 C 1.40963 * 126.93116 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00120 * 201.90669 * 17 16 15 19 19 C 1.39689 * 119.99982 * 21.91379 * 17 16 15 20 20 N 1.31076 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47264 * 89.99565 * 21 19 17 23 23 H 1.48504 * 109.46756 * 209.99870 * 21 19 17 24 24 H 1.48503 * 109.46875 * 329.99621 * 21 19 17 25 25 C 1.40257 * 120.28358 * 56.62086 * 8 7 6 26 26 C 1.39573 * 120.11660 * 0.27680 * 7 6 4 27 27 C 1.37884 * 120.05386 * 359.48512 * 26 7 6 28 28 F 1.35100 * 120.02409 * 180.23661 * 27 26 7 29 29 H 1.07999 * 119.96958 * 179.97438 * 6 4 3 30 30 H 1.07996 * 119.95657 * 0.04804 * 9 8 7 31 31 H 1.07993 * 119.61129 * 180.02562 * 10 9 8 32 32 H 1.07992 * 119.87175 * 180.02562 * 11 10 9 33 33 H 1.08001 * 125.37699 * 180.26038 * 15 13 12 34 34 H 0.97003 * 119.99711 * 179.97438 * 20 19 17 35 35 H 1.07996 * 119.97107 * 179.72797 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.6072 -1.0498 5 9 2.5953 1.1920 -2.0642 6 6 4.6480 0.6068 -1.0470 7 6 5.3449 0.0033 0.0007 8 6 6.8257 0.0039 0.0008 9 6 7.5284 -1.1959 0.0735 10 6 8.9113 -1.1907 0.0727 11 6 9.6135 -0.0041 0.0009 12 6 8.9352 1.2083 -0.0725 13 7 9.3640 2.5195 -0.1523 14 1 10.2935 2.7965 -0.1697 15 6 8.3056 3.3651 -0.2038 16 6 7.1277 2.6282 -0.1597 17 6 5.8117 3.1323 -0.1902 18 1 4.9965 2.5376 0.1951 19 6 5.5617 4.4009 -0.7188 20 7 6.5510 5.1228 -1.1861 21 14 3.8178 5.0692 -0.7586 22 1 3.5432 5.8112 0.4980 23 1 3.6650 5.9849 -1.9177 24 1 2.8588 3.9427 -0.8879 25 6 7.5325 1.2132 -0.0716 26 6 4.6486 -0.6064 1.0455 27 6 3.2698 -0.6046 1.0501 28 9 2.5964 -1.1907 2.0642 29 1 5.1893 1.0739 -1.8565 30 1 6.9927 -2.1320 0.1293 31 1 9.4485 -2.1259 0.1289 32 1 10.6933 -0.0172 0.0010 33 1 8.3677 4.4410 -0.2733 34 1 6.3774 6.0035 -1.5535 35 1 5.1903 -1.0765 1.8529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239931351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = 15.786745 kcal Electronic energy + Delta-G solvation = -26175.240275 eV Core-core repulsion = 22160.366894 eV Total energy + Delta-G solvation = -4014.873381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03017 -48.86278 -40.12457 -38.72411 -36.56263 -35.81570 -33.68385 -32.29270 -30.43459 -29.90754 -28.55592 -27.91835 -25.09549 -23.96473 -22.82379 -21.33232 -20.74420 -19.64322 -19.17903 -18.04919 -17.19142 -16.59589 -16.11332 -15.89439 -15.57071 -15.46499 -15.20845 -14.90444 -14.59002 -14.44891 -13.89822 -13.48448 -13.41293 -13.30007 -13.16516 -13.07165 -12.63794 -12.59057 -11.96273 -11.77069 -11.62990 -11.44096 -11.36688 -11.21819 -11.01160 -10.73613 -10.58446 -10.05002 -9.89446 -9.36053 -8.95866 -8.56252 -8.35414 -7.30176 -6.69323 -6.61109 -4.14095 0.51006 1.16999 1.83297 2.37352 2.64384 2.96431 3.05792 3.15431 3.20791 3.63526 3.76588 3.84135 3.99352 4.08745 4.31085 4.39156 4.64983 4.72013 4.96280 5.28658 5.36646 5.50283 5.61875 5.71220 5.74769 5.85938 5.96667 6.14116 6.22112 6.35915 6.51150 6.59114 6.81468 6.90315 6.98094 7.14741 7.25881 7.38429 7.47553 7.56991 7.81073 8.13224 8.47802 8.82536 8.98423 9.02183 10.40892 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.006580 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.279977 B = 4254.103373 C = 6431.102673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.263 3.737 3 C -0.117 4.117 4 C 0.172 3.828 5 F -0.121 7.121 6 C -0.113 4.113 7 C 0.074 3.926 8 C -0.021 4.021 9 C -0.154 4.154 10 C -0.121 4.121 11 C -0.133 4.133 12 C 0.083 3.917 13 N -0.589 5.589 14 H 0.397 0.603 15 C -0.066 4.066 16 C 0.023 3.977 17 C -0.428 4.428 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.832 5.832 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.261 1.261 25 C -0.103 4.103 26 C -0.157 4.157 27 C 0.168 3.832 28 F -0.126 7.126 29 H 0.162 0.838 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.274 0.726 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -8.426 1.412 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.052 4.052 3 C -0.122 4.122 4 C 0.150 3.850 5 F -0.099 7.099 6 C -0.132 4.132 7 C 0.072 3.928 8 C -0.022 4.022 9 C -0.174 4.174 10 C -0.141 4.141 11 C -0.155 4.155 12 C -0.028 4.028 13 N -0.190 5.190 14 H 0.230 0.770 15 C -0.191 4.191 16 C 0.017 3.983 17 C -0.461 4.461 18 H 0.092 0.908 19 C -0.144 4.144 20 N -0.462 5.462 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.110 4.110 26 C -0.176 4.176 27 C 0.146 3.854 28 F -0.104 7.104 29 H 0.180 0.820 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.084 0.916 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.514 -8.048 1.291 8.291 hybrid contribution -0.128 0.779 -0.108 0.796 sum 1.386 -7.270 1.183 7.495 Atomic orbital electron populations 1.81164 1.11621 1.08713 1.07196 1.25066 0.92081 0.93854 0.94212 1.15861 0.85258 1.11896 0.99228 1.17119 0.89654 0.93828 0.84421 1.91556 1.80268 1.81178 1.56935 1.21351 0.90618 0.99631 1.01556 1.18586 0.93471 0.90102 0.90601 1.17807 0.88774 0.92521 1.03091 1.20601 0.93900 0.95742 1.07205 1.20329 0.93669 0.96279 1.03784 1.19956 0.98095 0.90310 1.07120 1.18096 0.93617 0.85417 1.05670 1.41486 1.08184 1.04047 1.65286 0.76986 1.22776 0.84319 0.95463 1.16509 1.17966 0.93091 0.86269 1.00933 1.18704 0.92383 0.99718 1.35285 0.90779 1.25531 0.98108 0.96720 0.94007 1.69656 1.32207 1.10694 1.33637 0.86492 0.83364 0.79799 0.78445 1.19768 1.20414 1.18459 1.19364 0.91628 0.93674 1.06382 1.21162 0.90760 1.04386 1.01311 1.16994 0.89459 0.94729 0.84267 1.91536 1.80472 1.81264 1.57151 0.82049 0.86913 0.86964 0.87781 0.80631 0.91582 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.45 18.54 41.84 0.78 -6.67 16 2 C 0.26 4.46 14.60 -22.47 -0.33 4.13 16 3 C -0.12 -1.85 5.76 -106.60 -0.61 -2.47 16 4 C 0.17 2.85 7.27 -39.03 -0.28 2.57 16 5 F -0.12 -2.13 16.80 2.25 0.04 -2.09 16 6 C -0.11 -1.90 6.65 -39.22 -0.26 -2.16 16 7 C 0.07 1.19 4.62 -104.87 -0.48 0.71 16 8 C -0.02 -0.37 5.40 -104.73 -0.57 -0.94 16 9 C -0.15 -2.31 9.62 -39.19 -0.38 -2.69 16 10 C -0.12 -1.75 10.00 -39.62 -0.40 -2.15 16 11 C -0.13 -2.11 10.06 -39.32 -0.40 -2.51 16 12 C 0.08 1.57 7.23 -83.91 -0.61 0.96 16 13 N -0.59 -11.04 5.99 -9.81 -0.06 -11.10 16 14 H 0.40 5.97 8.96 -40.82 -0.37 5.61 16 15 C -0.07 -1.47 10.77 -15.62 -0.17 -1.64 16 16 C 0.02 0.52 5.96 -104.84 -0.62 -0.10 16 17 C -0.43 -10.16 7.55 -38.01 -0.29 -10.45 16 18 H 0.07 1.71 5.58 -52.48 -0.29 1.41 16 19 C 0.07 1.61 5.47 -17.33 -0.09 1.52 16 20 N -0.83 -20.22 10.81 55.54 0.60 -19.62 16 21 Si 0.89 18.99 29.56 -169.99 -5.02 13.96 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.10 -2.12 6.07 -104.63 -0.63 -2.76 16 26 C -0.16 -2.21 9.57 -39.21 -0.38 -2.58 16 27 C 0.17 2.42 7.27 -39.03 -0.28 2.14 16 28 F -0.13 -1.79 16.80 2.25 0.04 -1.76 16 29 H 0.16 2.88 7.81 -52.49 -0.41 2.47 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.18 4.09 6.37 -52.49 -0.33 3.76 16 34 H 0.27 6.28 8.30 -40.82 -0.34 5.94 16 35 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -25.76 322.92 -7.77 -33.53 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.23 Total: 7.29 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -6.78 Total: -18.41 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 1.32 Total: -37.39 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.76 -7.77 -33.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239931351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.319 kcal (2) G-P(sol) polarization free energy of solvation -25.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds