Wall clock time and date at job start Tue Mar 31 2020 14:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40065 * 120.05801 * 120.00327 * 3 2 1 5 5 F 1.35096 * 120.03046 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.93663 * 179.97438 * 4 3 2 7 7 C 1.39559 * 120.06568 * 359.97438 * 6 4 3 8 8 C 1.48079 * 119.94725 * 179.97438 * 7 6 4 9 9 C 1.39234 * 120.28559 * 236.58496 * 8 7 6 10 10 C 1.38297 * 120.09475 * 179.97438 * 9 8 7 11 11 C 1.38070 * 120.78116 * 0.02562 * 10 9 8 12 12 C 1.39111 * 120.25257 * 359.97438 * 11 10 9 13 13 N 1.38187 * 132.74185 * 180.02562 * 12 11 10 14 14 H 0.97003 * 124.70297 * 0.02562 * 13 12 11 15 15 C 1.35566 * 110.59718 * 179.97438 * 13 12 11 16 16 C 1.39009 * 109.24974 * 359.97438 * 15 13 12 17 17 C 1.40963 * 126.93116 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00120 * 201.90669 * 17 16 15 19 19 C 1.39689 * 119.99982 * 21.91379 * 17 16 15 20 20 N 1.31076 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47264 * 89.99565 * 21 19 17 23 23 H 1.48504 * 109.46756 * 209.99870 * 21 19 17 24 24 H 1.48503 * 109.46875 * 329.99621 * 21 19 17 25 25 C 1.40257 * 120.28358 * 56.62086 * 8 7 6 26 26 C 1.39573 * 120.11660 * 0.27680 * 7 6 4 27 27 C 1.37884 * 120.05386 * 359.48512 * 26 7 6 28 28 F 1.35100 * 120.02409 * 180.23661 * 27 26 7 29 29 H 1.07999 * 119.96958 * 179.97438 * 6 4 3 30 30 H 1.07996 * 119.95657 * 0.04804 * 9 8 7 31 31 H 1.07993 * 119.61129 * 180.02562 * 10 9 8 32 32 H 1.07992 * 119.87175 * 180.02562 * 11 10 9 33 33 H 1.08001 * 125.37699 * 180.26038 * 15 13 12 34 34 H 0.97003 * 119.99711 * 179.97438 * 20 19 17 35 35 H 1.07996 * 119.97107 * 179.72797 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.6072 -1.0498 5 9 2.5953 1.1920 -2.0642 6 6 4.6480 0.6068 -1.0470 7 6 5.3449 0.0033 0.0007 8 6 6.8257 0.0039 0.0008 9 6 7.5284 -1.1959 0.0735 10 6 8.9113 -1.1907 0.0727 11 6 9.6135 -0.0041 0.0009 12 6 8.9352 1.2083 -0.0725 13 7 9.3640 2.5195 -0.1523 14 1 10.2935 2.7965 -0.1697 15 6 8.3056 3.3651 -0.2038 16 6 7.1277 2.6282 -0.1597 17 6 5.8117 3.1323 -0.1902 18 1 4.9965 2.5376 0.1951 19 6 5.5617 4.4009 -0.7188 20 7 6.5510 5.1228 -1.1861 21 14 3.8178 5.0692 -0.7586 22 1 3.5432 5.8112 0.4980 23 1 3.6650 5.9849 -1.9177 24 1 2.8588 3.9427 -0.8879 25 6 7.5325 1.2132 -0.0716 26 6 4.6486 -0.6064 1.0455 27 6 3.2698 -0.6046 1.0501 28 9 2.5964 -1.1907 2.0642 29 1 5.1893 1.0739 -1.8565 30 1 6.9927 -2.1320 0.1293 31 1 9.4485 -2.1259 0.1289 32 1 10.6933 -0.0172 0.0010 33 1 8.3677 4.4410 -0.2733 34 1 6.3774 6.0035 -1.5535 35 1 5.1903 -1.0765 1.8529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239931351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:10 Heat of formation + Delta-G solvation = 5.532738 kcal Electronic energy + Delta-G solvation = -26175.684922 eV Core-core repulsion = 22160.366894 eV Total energy + Delta-G solvation = -4015.318029 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.22337 -50.19709 -41.52267 -40.02302 -37.93216 -37.15903 -35.34462 -33.63809 -31.74963 -31.31447 -29.89202 -29.38975 -26.70551 -25.30529 -24.07303 -22.68193 -22.10302 -21.25057 -20.46862 -19.40129 -18.45370 -18.01155 -17.63645 -17.25404 -16.92546 -16.81081 -16.48643 -16.16580 -16.04987 -15.82935 -15.20420 -14.85202 -14.81537 -14.68331 -14.50253 -14.43629 -14.31625 -13.87857 -13.28513 -13.18303 -12.99659 -12.96176 -12.85920 -12.74990 -12.45608 -12.04692 -12.02787 -11.68515 -11.42030 -11.05548 -10.28174 -9.81913 -9.77433 -8.68680 -8.36406 -8.23805 -5.89583 -0.76679 -0.05692 0.50998 1.08079 1.29220 1.33579 1.41086 1.47915 1.65746 2.27485 2.33487 2.39203 2.49023 2.55983 2.92830 3.08611 3.30917 3.45926 3.65071 3.74783 4.06071 4.31516 4.45090 4.50976 4.54866 4.58309 4.75037 4.87890 4.88926 5.05528 5.26415 5.32014 5.42864 5.46429 5.56019 5.69637 5.89160 5.99497 6.02052 6.12874 6.29507 6.59681 6.84300 7.21294 7.29500 7.42058 8.66592 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.006580 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.279977 B = 4254.103373 C = 6431.102673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.272 3.728 3 C -0.119 4.119 4 C 0.164 3.836 5 F -0.132 7.132 6 C -0.118 4.118 7 C 0.069 3.931 8 C -0.035 4.035 9 C -0.139 4.139 10 C -0.109 4.109 11 C -0.135 4.135 12 C 0.071 3.929 13 N -0.588 5.588 14 H 0.411 0.589 15 C -0.078 4.078 16 C -0.013 4.013 17 C -0.437 4.437 18 H 0.073 0.927 19 C 0.031 3.969 20 N -0.860 5.860 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.134 4.134 26 C -0.138 4.138 27 C 0.181 3.819 28 F -0.120 7.120 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.273 0.727 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -11.630 2.539 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.042 4.042 3 C -0.124 4.124 4 C 0.142 3.858 5 F -0.110 7.110 6 C -0.137 4.137 7 C 0.068 3.932 8 C -0.036 4.036 9 C -0.159 4.159 10 C -0.127 4.127 11 C -0.156 4.156 12 C -0.039 4.039 13 N -0.191 5.191 14 H 0.247 0.753 15 C -0.203 4.203 16 C -0.019 4.019 17 C -0.471 4.471 18 H 0.091 0.909 19 C -0.177 4.177 20 N -0.492 5.492 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.141 4.141 26 C -0.156 4.156 27 C 0.158 3.842 28 F -0.098 7.098 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.083 0.917 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.633 -11.272 2.424 11.826 hybrid contribution -0.341 1.538 -0.416 1.630 sum 2.292 -9.734 2.008 10.199 Atomic orbital electron populations 1.81168 1.12263 1.09562 1.07953 1.25210 0.92244 0.93215 0.93565 1.15877 0.84672 1.12303 0.99561 1.17139 0.89601 0.94429 0.84623 1.91526 1.80443 1.81531 1.57503 1.21209 0.90626 1.00152 1.01750 1.18607 0.93241 0.90424 0.90900 1.18012 0.89352 0.92517 1.03706 1.21092 0.94507 0.95992 1.04294 1.20903 0.93647 0.97401 1.00795 1.20385 0.99824 0.89353 1.06021 1.18530 0.93515 0.86188 1.05658 1.41313 1.08229 1.03864 1.65685 0.75270 1.22517 0.85607 0.95145 1.17065 1.18248 0.93074 0.88404 1.02167 1.18852 0.92968 0.99856 1.35404 0.90881 1.26023 1.00113 0.97168 0.94348 1.69740 1.33106 1.11011 1.35391 0.85846 0.80785 0.79043 0.78223 1.19726 1.20382 1.18883 1.19541 0.92894 0.93457 1.08171 1.21343 0.90348 1.03026 1.00923 1.16919 0.89551 0.93972 0.83711 1.91561 1.80435 1.81020 1.56769 0.83939 0.83322 0.82680 0.84855 0.82521 0.91703 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.42 18.54 19.00 0.35 -15.07 16 2 C 0.27 9.01 14.60 88.33 1.29 10.30 16 3 C -0.12 -3.62 5.76 -21.15 -0.12 -3.75 16 4 C 0.16 5.44 7.27 22.63 0.16 5.60 16 5 F -0.13 -4.72 16.80 44.97 0.76 -3.96 16 6 C -0.12 -3.99 6.65 22.50 0.15 -3.84 16 7 C 0.07 2.12 4.62 -20.02 -0.09 2.03 16 8 C -0.04 -1.15 5.40 -19.94 -0.11 -1.26 16 9 C -0.14 -3.49 9.62 22.52 0.22 -3.27 16 10 C -0.11 -2.52 10.00 22.24 0.22 -2.30 16 11 C -0.13 -3.72 10.06 22.44 0.23 -3.49 16 12 C 0.07 2.58 7.23 38.85 0.28 2.86 16 13 N -0.59 -22.03 5.99 -184.95 -1.11 -23.14 16 14 H 0.41 12.27 8.96 -92.71 -0.83 11.44 16 15 C -0.08 -3.60 10.77 84.30 0.91 -2.69 16 16 C -0.01 -0.64 5.96 -20.00 -0.12 -0.76 16 17 C -0.44 -21.50 7.55 23.29 0.18 -21.33 16 18 H 0.07 3.47 5.58 -2.91 -0.02 3.45 16 19 C 0.03 1.55 5.47 85.16 0.47 2.02 16 20 N -0.86 -43.92 10.81 21.79 0.24 -43.68 16 21 Si 0.94 40.28 29.56 68.60 2.03 42.31 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 C -0.13 -5.42 6.07 -19.87 -0.12 -5.54 16 26 C -0.14 -3.43 9.57 22.51 0.22 -3.21 16 27 C 0.18 4.78 7.27 22.63 0.16 4.94 16 28 F -0.12 -3.06 16.80 44.97 0.76 -2.30 16 29 H 0.14 5.33 7.81 -2.91 -0.02 5.31 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.16 7.75 6.37 -2.91 -0.02 7.73 16 34 H 0.27 13.16 8.30 -92.71 -0.77 12.39 16 35 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -57.85 322.92 7.31 -50.55 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.37 Total: 18.98 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.92 Total: -23.69 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -0.52 Total: -81.89 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.51 Total: -6.26 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -57.85 7.31 -50.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239931351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.078 kcal (2) G-P(sol) polarization free energy of solvation -57.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds