Wall clock time and date at job start Tue Mar 31 2020 14:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47084 * 270.00064 * 3 2 1 5 5 H 1.48502 * 109.46859 * 30.00005 * 3 2 1 6 6 H 1.48501 * 109.47030 * 149.99828 * 3 2 1 7 7 C 1.37877 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00353 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47590 * 179.97438 * 9 7 2 11 11 C 1.38327 * 119.87715 * 89.99629 * 10 9 7 12 12 C 1.38013 * 120.11965 * 180.02562 * 11 10 9 13 13 C 1.39348 * 119.87972 * 359.97438 * 12 11 10 14 14 C 1.48369 * 120.12206 * 179.97438 * 13 12 11 15 15 C 1.39335 * 120.12863 * 130.00379 * 14 13 12 16 16 C 1.38003 * 119.89990 * 180.02562 * 15 14 13 17 17 C 1.38358 * 120.17409 * 0.27987 * 16 15 14 18 18 C 1.50698 * 119.86290 * 179.72112 * 17 16 15 19 19 F 1.39896 * 109.47161 * 90.00374 * 18 17 16 20 20 F 1.39904 * 109.47100 * 210.00054 * 18 17 16 21 21 F 1.39900 * 109.47487 * 329.99972 * 18 17 16 22 22 C 1.38254 * 120.26818 * 359.44551 * 17 16 15 23 23 C 1.38283 * 120.09538 * 0.54967 * 22 17 16 24 24 F 1.35099 * 120.08408 * 179.74524 * 23 22 17 25 25 C 1.39341 * 119.75504 * 0.26211 * 13 12 11 26 26 C 1.38014 * 119.87660 * 359.45993 * 25 13 12 27 27 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47517 * 59.99482 * 9 7 2 29 29 H 1.09000 * 109.47045 * 300.00203 * 9 7 2 30 30 H 1.08003 * 119.93551 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.05929 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.05026 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.90956 * 179.97438 * 16 15 14 34 34 H 1.07998 * 119.94997 * 180.27593 * 22 17 16 35 35 H 1.08001 * 120.06390 * 179.74491 * 25 13 12 36 36 H 1.08005 * 119.94295 * 180.27727 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6780 -4.1683 1.2000 12 6 3.5752 -5.2170 1.2058 13 6 4.0295 -5.7486 0.0005 14 6 4.9945 -6.8757 0.0005 15 6 4.7478 -8.0075 -0.7737 16 6 5.6483 -9.0533 -0.7698 17 6 6.7923 -8.9831 0.0053 18 6 7.7677 -10.1318 0.0092 19 9 8.7192 -9.9389 -0.9980 20 9 8.4092 -10.1946 1.2509 21 9 7.0803 -11.3282 -0.2215 22 6 7.0469 -7.8610 0.7718 23 6 6.1522 -6.8066 0.7762 24 9 6.3987 -5.7124 1.5293 25 6 3.5789 -5.2139 -1.2047 26 6 2.6773 -4.1690 -1.1988 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8903 30 1 2.3255 -3.7552 2.1335 31 1 3.9239 -5.6254 2.1428 32 1 3.8534 -8.0664 -1.3760 33 1 5.4571 -9.9309 -1.3695 34 1 7.9436 -7.8098 1.3715 35 1 3.9309 -5.6194 -2.1418 36 1 2.3238 -3.7566 -2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240397171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:04 Heat of formation + Delta-G solvation = -160.239950 kcal Electronic energy + Delta-G solvation = -25576.618837 eV Core-core repulsion = 21103.423179 eV Total energy + Delta-G solvation = -4473.195658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.49662 -49.04953 -48.01236 -47.95243 -39.79198 -38.41257 -34.11523 -32.71754 -31.17675 -30.58349 -30.43795 -27.63993 -25.69992 -23.52355 -23.40565 -22.03146 -21.90481 -20.26023 -19.03345 -18.82000 -18.74672 -16.97750 -16.57345 -16.42387 -16.35491 -15.82622 -15.13397 -14.85230 -14.81649 -14.55433 -14.46202 -14.34312 -14.27401 -14.17794 -14.10857 -14.00914 -13.30897 -12.96862 -12.89276 -12.69041 -12.62346 -12.24661 -12.00791 -11.55770 -11.36783 -11.15775 -10.83745 -10.58889 -10.38240 -9.78925 -9.61301 -9.43834 -9.15505 -8.50096 -8.46382 -7.81889 -6.11188 -4.15614 0.31606 0.75164 1.83212 1.90225 2.27220 3.00520 3.26641 3.30115 3.33203 3.37561 3.61469 4.00202 4.06640 4.22597 4.40012 4.41850 4.46439 4.57904 4.84133 5.14639 5.23140 5.32846 5.36680 5.49209 5.57135 5.72225 5.80528 5.84177 6.04612 6.06305 6.32648 6.46473 6.53007 6.84243 7.00813 7.04018 7.39127 7.54442 7.71893 7.84335 8.22517 8.89601 9.48860 10.98634 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.002383 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.020748 B =11744.729949 C =12089.122645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.015 4.015 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.110 4.110 14 C -0.017 4.017 15 C -0.087 4.087 16 C -0.078 4.078 17 C -0.170 4.170 18 C 0.513 3.487 19 F -0.175 7.175 20 F -0.176 7.176 21 F -0.175 7.175 22 C -0.105 4.105 23 C 0.104 3.896 24 F -0.122 7.122 25 C -0.094 4.094 26 C -0.127 4.127 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.690 -20.857 -0.811 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.015 4.015 11 C -0.143 4.143 12 C -0.109 4.109 13 C -0.110 4.110 14 C -0.018 4.018 15 C -0.105 4.105 16 C -0.096 4.096 17 C -0.172 4.172 18 C 0.458 3.542 19 F -0.156 7.156 20 F -0.158 7.158 21 F -0.157 7.157 22 C -0.124 4.124 23 C 0.085 3.915 24 F -0.100 7.100 25 C -0.112 4.112 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.134 0.866 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.575 -20.723 -0.772 24.253 hybrid contribution 0.754 0.986 0.177 1.254 sum 13.329 -19.738 -0.595 23.824 Atomic orbital electron populations 1.69950 1.06051 1.26956 1.50230 1.25007 0.94896 0.99314 0.95030 0.86522 0.79867 0.83022 0.78243 1.20532 1.21095 1.19738 1.21023 0.93068 0.89716 1.51409 0.92404 1.18426 0.92599 0.89600 0.98637 1.20880 0.94756 0.93971 0.91867 1.21053 0.98277 0.96247 0.98702 1.21047 0.97238 0.96392 0.96189 1.18288 1.00546 0.97669 0.94492 1.19223 0.92707 0.95052 0.94855 1.21184 0.99710 0.91197 0.98445 1.20923 0.92078 0.99542 0.97084 1.19683 0.97692 0.95105 1.04677 1.18175 0.79939 0.82258 0.73792 1.93239 1.66276 1.95101 1.61034 1.93202 1.83128 1.96575 1.42860 1.93197 1.79333 1.48786 1.94345 1.20752 1.00249 0.91744 0.99623 1.17506 0.94888 0.84544 0.94576 1.91571 1.93976 1.51142 1.73360 1.21021 0.97243 0.96957 0.96015 1.21054 0.98204 0.96547 0.98659 0.92744 0.95094 0.95086 0.85874 0.86841 0.83487 0.83975 0.83483 0.86590 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -14.04 9.09 -34.44 -0.31 -14.35 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.09 5.10 -29.04 -0.15 0.94 16 10 C -0.01 -0.30 5.07 -104.56 -0.53 -0.83 16 11 C -0.12 -2.32 9.68 -39.63 -0.38 -2.71 16 12 C -0.09 -1.47 8.87 -39.25 -0.35 -1.81 16 13 C -0.11 -1.65 5.32 -104.90 -0.56 -2.21 16 14 C -0.02 -0.22 5.48 -104.84 -0.57 -0.79 16 15 C -0.09 -0.85 9.52 -39.26 -0.37 -1.22 16 16 C -0.08 -0.67 9.38 -39.62 -0.37 -1.04 16 17 C -0.17 -1.60 5.46 -104.57 -0.57 -2.17 16 18 C 0.51 4.64 3.36 36.00 0.12 4.77 16 19 F -0.18 -1.68 17.30 2.25 0.04 -1.64 16 20 F -0.18 -1.66 16.46 2.25 0.04 -1.63 16 21 F -0.18 -1.57 16.45 2.25 0.04 -1.53 16 22 C -0.10 -1.07 9.36 -39.56 -0.37 -1.44 16 23 C 0.10 1.28 7.16 -39.09 -0.28 1.00 16 24 F -0.12 -1.72 15.90 2.25 0.04 -1.68 16 25 C -0.09 -1.44 9.52 -39.25 -0.37 -1.81 16 26 C -0.13 -2.29 9.68 -39.63 -0.38 -2.68 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 31 H 0.11 1.64 7.79 -52.49 -0.41 1.23 16 32 H 0.15 1.17 8.05 -52.49 -0.42 0.75 16 33 H 0.14 0.89 7.59 -52.49 -0.40 0.49 16 34 H 0.15 1.26 7.60 -52.49 -0.40 0.86 16 35 H 0.12 1.44 8.05 -52.49 -0.42 1.01 16 36 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -28.94 335.16 -7.92 -36.86 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.28 Total: -1.72 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -5.56 Total: -24.80 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.74 Total: -25.10 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.15 Total: -6.48 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.94 -7.92 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.384 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds