Wall clock time and date at job start Tue Mar 31 2020 14:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47084 * 270.00064 * 3 2 1 5 5 H 1.48502 * 109.46859 * 30.00005 * 3 2 1 6 6 H 1.48501 * 109.47030 * 149.99828 * 3 2 1 7 7 C 1.37877 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00353 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47590 * 179.97438 * 9 7 2 11 11 C 1.38327 * 119.87715 * 89.99629 * 10 9 7 12 12 C 1.38013 * 120.11965 * 180.02562 * 11 10 9 13 13 C 1.39348 * 119.87972 * 359.97438 * 12 11 10 14 14 C 1.48369 * 120.12206 * 179.97438 * 13 12 11 15 15 C 1.39335 * 120.12863 * 130.00379 * 14 13 12 16 16 C 1.38003 * 119.89990 * 180.02562 * 15 14 13 17 17 C 1.38358 * 120.17409 * 0.27987 * 16 15 14 18 18 C 1.50698 * 119.86290 * 179.72112 * 17 16 15 19 19 F 1.39896 * 109.47161 * 90.00374 * 18 17 16 20 20 F 1.39904 * 109.47100 * 210.00054 * 18 17 16 21 21 F 1.39900 * 109.47487 * 329.99972 * 18 17 16 22 22 C 1.38254 * 120.26818 * 359.44551 * 17 16 15 23 23 C 1.38283 * 120.09538 * 0.54967 * 22 17 16 24 24 F 1.35099 * 120.08408 * 179.74524 * 23 22 17 25 25 C 1.39341 * 119.75504 * 0.26211 * 13 12 11 26 26 C 1.38014 * 119.87660 * 359.45993 * 25 13 12 27 27 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47517 * 59.99482 * 9 7 2 29 29 H 1.09000 * 109.47045 * 300.00203 * 9 7 2 30 30 H 1.08003 * 119.93551 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.05929 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.05026 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.90956 * 179.97438 * 16 15 14 34 34 H 1.07998 * 119.94997 * 180.27593 * 22 17 16 35 35 H 1.08001 * 120.06390 * 179.74491 * 25 13 12 36 36 H 1.08005 * 119.94295 * 180.27727 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6780 -4.1683 1.2000 12 6 3.5752 -5.2170 1.2058 13 6 4.0295 -5.7486 0.0005 14 6 4.9945 -6.8757 0.0005 15 6 4.7478 -8.0075 -0.7737 16 6 5.6483 -9.0533 -0.7698 17 6 6.7923 -8.9831 0.0053 18 6 7.7677 -10.1318 0.0092 19 9 8.7192 -9.9389 -0.9980 20 9 8.4092 -10.1946 1.2509 21 9 7.0803 -11.3282 -0.2215 22 6 7.0469 -7.8610 0.7718 23 6 6.1522 -6.8066 0.7762 24 9 6.3987 -5.7124 1.5293 25 6 3.5789 -5.2139 -1.2047 26 6 2.6773 -4.1690 -1.1988 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8903 30 1 2.3255 -3.7552 2.1335 31 1 3.9239 -5.6254 2.1428 32 1 3.8534 -8.0664 -1.3760 33 1 5.4571 -9.9309 -1.3695 34 1 7.9436 -7.8098 1.3715 35 1 3.9309 -5.6194 -2.1418 36 1 2.3238 -3.7566 -2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240397171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:03 Heat of formation + Delta-G solvation = -172.076208 kcal Electronic energy + Delta-G solvation = -25577.132096 eV Core-core repulsion = 21103.423179 eV Total energy + Delta-G solvation = -4473.708917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.20872 -50.02632 -48.71980 -48.67036 -40.78890 -39.59457 -35.72982 -34.26398 -32.17333 -31.90807 -31.64817 -29.10831 -26.90696 -25.04493 -24.35723 -23.15441 -23.13045 -21.62394 -19.81062 -19.53069 -19.47164 -18.54574 -18.01530 -17.44733 -17.25682 -16.86461 -16.74964 -15.96521 -15.88645 -15.62580 -15.52892 -15.28807 -15.13278 -15.00623 -14.81903 -14.74508 -14.57046 -14.32813 -14.21606 -13.95677 -13.72095 -13.38591 -13.32202 -13.20156 -12.76571 -12.60380 -12.51141 -12.23491 -11.86259 -11.58705 -11.42546 -10.62465 -10.52808 -10.01830 -9.81415 -9.20552 -8.22479 -6.35840 -0.55678 -0.02425 0.54615 0.54754 1.38914 1.39450 1.51075 1.54244 2.17449 2.38100 2.56807 2.87432 2.90761 3.08514 3.22761 3.35455 3.39347 3.67223 3.86101 4.00902 4.07116 4.14581 4.31493 4.40817 4.57557 4.63761 4.71109 4.85661 4.93573 5.04517 5.06934 5.14966 5.32808 5.35699 5.47816 5.54064 5.61948 5.72808 6.02972 6.05392 6.19374 6.76802 7.32947 8.86630 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.002383 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.020748 B =11744.729949 C =12089.122645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.054 3.946 10 C -0.050 4.050 11 C -0.136 4.136 12 C -0.092 4.092 13 C -0.093 4.093 14 C -0.038 4.038 15 C -0.076 4.076 16 C -0.067 4.067 17 C -0.166 4.166 18 C 0.518 3.482 19 F -0.177 7.177 20 F -0.179 7.179 21 F -0.172 7.172 22 C -0.103 4.103 23 C 0.088 3.912 24 F -0.139 7.139 25 C -0.085 4.085 26 C -0.134 4.134 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.004 0.996 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.783 -22.891 -1.759 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.017 3.983 10 C -0.050 4.050 11 C -0.154 4.154 12 C -0.110 4.110 13 C -0.093 4.093 14 C -0.039 4.039 15 C -0.094 4.094 16 C -0.084 4.084 17 C -0.168 4.168 18 C 0.464 3.536 19 F -0.159 7.159 20 F -0.160 7.160 21 F -0.153 7.153 22 C -0.121 4.121 23 C 0.068 3.932 24 F -0.117 7.117 25 C -0.103 4.103 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.171 0.829 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.676 -22.772 -1.720 27.146 hybrid contribution 0.190 1.411 0.466 1.498 sum 14.865 -21.360 -1.254 26.054 Atomic orbital electron populations 1.70067 1.07592 1.28002 1.51167 1.25895 0.95760 1.03018 0.94548 0.85468 0.78567 0.78540 0.78638 1.19549 1.20430 1.19231 1.21350 0.93019 0.91252 1.51135 0.92900 1.18147 0.92958 0.91072 0.96143 1.20540 0.96146 0.94409 0.93892 1.21017 0.99285 0.97375 0.97738 1.21205 0.96428 0.95609 0.97785 1.18565 0.99480 0.97492 0.93756 1.19144 0.92539 0.95341 0.96875 1.21404 1.00444 0.90165 0.97374 1.21249 0.90942 0.99961 0.96287 1.19831 0.97972 0.94753 1.04212 1.18071 0.79754 0.82187 0.73626 1.93241 1.66380 1.95117 1.61120 1.93204 1.83183 1.96581 1.43050 1.93209 1.79229 1.48589 1.94308 1.20856 1.00256 0.91317 0.99709 1.17691 0.95694 0.84763 0.95009 1.91530 1.94164 1.52101 1.73942 1.21310 0.95751 0.95458 0.97767 1.21102 0.99009 0.97516 0.97575 0.92497 0.97351 0.97751 0.86699 0.85200 0.81317 0.81042 0.82289 0.82910 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -30.08 9.09 25.60 0.23 -29.85 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.05 2.83 5.10 29.10 0.15 2.98 16 10 C -0.05 -2.14 5.07 -19.82 -0.10 -2.24 16 11 C -0.14 -5.25 9.68 22.24 0.22 -5.04 16 12 C -0.09 -2.95 8.87 22.48 0.20 -2.75 16 13 C -0.09 -2.61 5.32 -20.05 -0.11 -2.72 16 14 C -0.04 -0.84 5.48 -20.00 -0.11 -0.95 16 15 C -0.08 -1.16 9.52 22.48 0.21 -0.94 16 16 C -0.07 -0.84 9.38 22.24 0.21 -0.63 16 17 C -0.17 -2.54 5.46 -19.83 -0.11 -2.65 16 18 C 0.52 7.72 3.36 71.24 0.24 7.96 16 19 F -0.18 -2.87 17.30 44.97 0.78 -2.09 16 20 F -0.18 -2.91 16.46 44.97 0.74 -2.17 16 21 F -0.17 -2.48 16.45 44.97 0.74 -1.74 16 22 C -0.10 -1.82 9.36 22.28 0.21 -1.61 16 23 C 0.09 1.97 7.16 22.59 0.16 2.13 16 24 F -0.14 -3.75 15.90 44.97 0.72 -3.04 16 25 C -0.09 -2.43 9.52 22.48 0.21 -2.21 16 26 C -0.13 -4.88 9.68 22.24 0.22 -4.66 16 27 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 28 H 0.01 0.46 8.08 -2.38 -0.02 0.44 16 29 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 30 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.13 3.65 7.79 -2.91 -0.02 3.63 16 32 H 0.17 1.85 8.05 -2.91 -0.02 1.82 16 33 H 0.17 1.21 7.59 -2.91 -0.02 1.19 16 34 H 0.16 2.36 7.60 -2.91 -0.02 2.34 16 35 H 0.15 3.20 8.05 -2.91 -0.02 3.18 16 36 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -64.64 335.16 8.71 -55.93 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.13 Total: 4.50 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.29 Total: -42.36 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.97 Total: -9.04 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.64 8.71 -55.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.145 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds