Wall clock time and date at job start Tue Mar 31 2020 14:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47107 * 269.99875 * 3 2 1 5 5 H 1.48500 * 109.47280 * 29.99899 * 3 2 1 6 6 H 1.48507 * 109.46924 * 150.00206 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.38341 * 119.93717 * 270.27411 * 10 9 7 12 12 C 1.38303 * 120.24475 * 180.27710 * 11 10 9 13 13 C 1.38039 * 120.12211 * 359.44585 * 12 11 10 14 14 C 1.39327 * 119.87549 * 0.27921 * 13 12 11 15 15 C 1.48369 * 120.12430 * 180.02562 * 14 13 12 16 16 C 1.39329 * 120.13013 * 129.72431 * 15 14 13 17 17 C 1.38008 * 119.90097 * 179.68130 * 16 15 14 18 18 C 1.38359 * 120.16718 * 0.62122 * 17 16 15 19 19 C 1.50703 * 119.86044 * 179.70115 * 18 17 16 20 20 F 1.39896 * 109.47333 * 269.97384 * 19 18 17 21 21 F 1.39903 * 109.47344 * 29.97779 * 19 18 17 22 22 F 1.39907 * 109.47033 * 149.97477 * 19 18 17 23 23 C 1.38253 * 120.27543 * 359.67271 * 18 17 16 24 24 C 1.38283 * 120.09256 * 0.02562 * 23 18 17 25 25 F 1.35101 * 120.08832 * 179.97438 * 24 23 18 26 26 C 1.37996 * 119.93656 * 90.00162 * 10 9 7 27 27 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47358 * 60.00291 * 9 7 2 29 29 H 1.09005 * 109.47288 * 300.00123 * 9 7 2 30 30 H 1.07998 * 119.87779 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.94275 * 179.72764 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.25516 * 13 12 11 33 33 H 1.08003 * 120.05577 * 359.97135 * 16 15 14 34 34 H 1.07997 * 119.91514 * 180.31861 * 17 16 15 35 35 H 1.08005 * 119.95425 * 180.02562 * 23 18 17 36 36 H 1.07993 * 120.06342 * 359.97418 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 0.0001 11 6 4.2391 -3.2674 1.1989 12 6 4.7056 -4.5694 1.2065 13 6 4.9381 -5.2289 0.0163 14 6 4.7076 -4.5785 -1.1940 15 6 4.9552 -5.2822 -2.4765 16 6 3.9761 -5.2949 -3.4677 17 6 4.2139 -5.9454 -4.6614 18 6 5.4170 -6.5957 -4.8712 19 6 5.6667 -7.3095 -6.1747 20 9 5.2355 -8.6362 -6.0700 21 9 4.9615 -6.6695 -7.1995 22 9 7.0352 -7.2855 -6.4648 23 6 6.3912 -6.5928 -3.8902 24 6 6.1670 -5.9392 -2.6924 25 9 7.1189 -5.9369 -1.7336 26 6 4.2431 -3.2644 -1.1957 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6797 0.8894 29 1 3.8746 -0.6808 -0.8905 30 1 4.0539 -2.7569 2.1324 31 1 4.8839 -5.0727 2.1453 32 1 5.2984 -6.2470 0.0234 33 1 3.0341 -4.7925 -3.3040 34 1 3.4571 -5.9510 -5.4318 35 1 7.3286 -7.1018 -4.0596 36 1 4.0623 -2.7557 -2.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240397214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:12 Heat of formation + Delta-G solvation = -156.108819 kcal Electronic energy + Delta-G solvation = -25850.283814 eV Core-core repulsion = 21377.267295 eV Total energy + Delta-G solvation = -4473.016519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.44506 -49.07713 -47.95771 -47.90375 -39.78105 -38.45347 -33.95543 -32.91754 -31.51576 -30.98974 -29.80812 -27.71430 -26.13259 -23.52491 -23.07322 -22.68613 -21.34158 -20.11041 -18.97086 -18.77025 -18.68573 -16.85695 -16.73994 -16.49351 -16.34675 -15.87295 -15.61297 -14.81531 -14.76434 -14.63228 -14.40928 -14.37451 -14.24772 -14.05817 -14.00117 -13.94884 -13.34823 -12.98402 -12.91517 -12.79671 -12.44548 -12.28218 -12.04171 -11.77968 -11.59253 -11.28784 -10.85083 -10.46730 -10.15833 -10.08108 -9.65892 -9.43790 -9.17068 -8.65815 -8.31026 -7.97979 -6.14988 -4.15002 0.34348 0.80339 1.73881 1.89599 2.32041 3.04776 3.23172 3.31736 3.33689 3.34508 3.66209 4.01754 4.11530 4.21218 4.34706 4.40228 4.49603 4.63833 4.88780 5.16590 5.21265 5.30457 5.36695 5.49276 5.61254 5.68575 5.81216 5.86077 5.90380 6.07025 6.27486 6.42316 6.47920 6.78780 6.79991 6.90908 6.92267 7.40638 7.43227 7.61197 8.40535 8.89361 9.44959 10.97720 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002998 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.425153 B = 9338.713310 C =10359.055746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.030 4.030 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.078 4.078 15 C -0.024 4.024 16 C -0.081 4.081 17 C -0.077 4.077 18 C -0.168 4.168 19 C 0.513 3.487 20 F -0.175 7.175 21 F -0.174 7.174 22 F -0.177 7.177 23 C -0.107 4.107 24 C 0.105 3.895 25 F -0.125 7.125 26 C -0.095 4.095 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.602 -14.639 -8.988 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.030 4.030 11 C -0.124 4.124 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.078 4.078 15 C -0.025 4.025 16 C -0.099 4.099 17 C -0.095 4.095 18 C -0.169 4.169 19 C 0.458 3.542 20 F -0.157 7.157 21 F -0.155 7.155 22 F -0.158 7.158 23 C -0.126 4.126 24 C 0.085 3.915 25 F -0.103 7.103 26 C -0.113 4.113 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.485 -14.540 -8.984 21.166 hybrid contribution 0.501 0.727 -0.073 0.886 sum 12.986 -13.812 -9.057 21.011 Atomic orbital electron populations 1.69893 1.06260 1.27088 1.50373 1.24993 0.94735 0.99032 0.94380 0.86820 0.80414 0.83671 0.78711 1.20106 1.21183 1.18910 1.20902 0.88100 0.94700 1.51661 0.90768 1.18833 0.97579 0.88366 0.97564 1.20233 0.92765 0.98101 0.91866 1.21224 0.98317 0.94456 0.98433 1.20977 1.00506 0.95129 0.97350 1.20903 1.01591 0.99306 0.91638 1.18455 1.04165 0.94594 0.90581 1.19217 0.92211 0.95907 0.95185 1.21309 0.99461 0.97882 0.91216 1.20971 0.95382 0.95117 0.98005 1.19709 0.97921 1.05243 0.94044 1.18174 0.74058 0.77177 0.84757 1.93236 1.89604 1.36558 1.96261 1.93207 1.78728 1.81606 1.61999 1.93199 1.31911 1.96360 1.94341 1.20716 1.00099 0.99983 0.91760 1.17450 0.86811 1.00477 0.86736 1.91542 1.62196 1.94701 1.61883 1.21070 0.98638 0.92874 0.98733 0.92509 0.95209 0.95745 0.85953 0.86354 0.86817 0.82992 0.83777 0.83502 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.93 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.01 9.65 -34.44 -0.33 -14.34 16 8 H 0.07 2.21 7.98 -52.48 -0.42 1.79 16 9 C 0.01 0.31 4.17 -29.03 -0.12 0.19 16 10 C -0.03 -0.59 5.06 -104.67 -0.53 -1.12 16 11 C -0.11 -1.89 9.69 -39.52 -0.38 -2.27 16 12 C -0.12 -1.86 10.03 -39.63 -0.40 -2.25 16 13 C -0.12 -1.74 8.87 -39.25 -0.35 -2.09 16 14 C -0.08 -1.22 5.32 -104.90 -0.56 -1.77 16 15 C -0.02 -0.32 5.48 -104.84 -0.57 -0.90 16 16 C -0.08 -0.93 9.52 -39.26 -0.37 -1.31 16 17 C -0.08 -0.76 9.38 -39.62 -0.37 -1.13 16 18 C -0.17 -1.70 5.46 -104.57 -0.57 -2.27 16 19 C 0.51 4.99 3.36 36.01 0.12 5.11 16 20 F -0.18 -1.77 17.30 2.25 0.04 -1.73 16 21 F -0.17 -1.73 16.45 2.25 0.04 -1.69 16 22 F -0.18 -1.75 16.45 2.25 0.04 -1.71 16 23 C -0.11 -1.11 9.36 -39.56 -0.37 -1.48 16 24 C 0.10 1.29 7.16 -39.08 -0.28 1.01 16 25 F -0.12 -1.64 15.90 2.25 0.04 -1.60 16 26 C -0.10 -1.69 9.17 -39.25 -0.36 -2.05 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 29 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 30 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.49 7.78 -52.49 -0.41 1.08 16 33 H 0.15 1.69 8.05 -52.48 -0.42 1.27 16 34 H 0.14 1.15 7.59 -52.49 -0.40 0.75 16 35 H 0.15 1.26 7.59 -52.48 -0.40 0.86 16 36 H 0.12 2.09 8.05 -52.49 -0.42 1.66 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -29.24 331.54 -7.54 -36.78 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.24 Total: -0.32 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -5.55 Total: -24.81 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.15 Total: -6.73 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.24 -7.54 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.333 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds