Wall clock time and date at job start Tue Mar 31 2020 14:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47107 * 269.99875 * 3 2 1 5 5 H 1.48500 * 109.47280 * 29.99899 * 3 2 1 6 6 H 1.48507 * 109.46924 * 150.00206 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.38341 * 119.93717 * 270.27411 * 10 9 7 12 12 C 1.38303 * 120.24475 * 180.27710 * 11 10 9 13 13 C 1.38039 * 120.12211 * 359.44585 * 12 11 10 14 14 C 1.39327 * 119.87549 * 0.27921 * 13 12 11 15 15 C 1.48369 * 120.12430 * 180.02562 * 14 13 12 16 16 C 1.39329 * 120.13013 * 129.72431 * 15 14 13 17 17 C 1.38008 * 119.90097 * 179.68130 * 16 15 14 18 18 C 1.38359 * 120.16718 * 0.62122 * 17 16 15 19 19 C 1.50703 * 119.86044 * 179.70115 * 18 17 16 20 20 F 1.39896 * 109.47333 * 269.97384 * 19 18 17 21 21 F 1.39903 * 109.47344 * 29.97779 * 19 18 17 22 22 F 1.39907 * 109.47033 * 149.97477 * 19 18 17 23 23 C 1.38253 * 120.27543 * 359.67271 * 18 17 16 24 24 C 1.38283 * 120.09256 * 0.02562 * 23 18 17 25 25 F 1.35101 * 120.08832 * 179.97438 * 24 23 18 26 26 C 1.37996 * 119.93656 * 90.00162 * 10 9 7 27 27 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47358 * 60.00291 * 9 7 2 29 29 H 1.09005 * 109.47288 * 300.00123 * 9 7 2 30 30 H 1.07998 * 119.87779 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.94275 * 179.72764 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.25516 * 13 12 11 33 33 H 1.08003 * 120.05577 * 359.97135 * 16 15 14 34 34 H 1.07997 * 119.91514 * 180.31861 * 17 16 15 35 35 H 1.08005 * 119.95425 * 180.02562 * 23 18 17 36 36 H 1.07993 * 120.06342 * 359.97418 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 0.0001 11 6 4.2391 -3.2674 1.1989 12 6 4.7056 -4.5694 1.2065 13 6 4.9381 -5.2289 0.0163 14 6 4.7076 -4.5785 -1.1940 15 6 4.9552 -5.2822 -2.4765 16 6 3.9761 -5.2949 -3.4677 17 6 4.2139 -5.9454 -4.6614 18 6 5.4170 -6.5957 -4.8712 19 6 5.6667 -7.3095 -6.1747 20 9 5.2355 -8.6362 -6.0700 21 9 4.9615 -6.6695 -7.1995 22 9 7.0352 -7.2855 -6.4648 23 6 6.3912 -6.5928 -3.8902 24 6 6.1670 -5.9392 -2.6924 25 9 7.1189 -5.9369 -1.7336 26 6 4.2431 -3.2644 -1.1957 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6797 0.8894 29 1 3.8746 -0.6808 -0.8905 30 1 4.0539 -2.7569 2.1324 31 1 4.8839 -5.0727 2.1453 32 1 5.2984 -6.2470 0.0234 33 1 3.0341 -4.7925 -3.3040 34 1 3.4571 -5.9510 -5.4318 35 1 7.3286 -7.1018 -4.0596 36 1 4.0623 -2.7557 -2.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240397214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:12 Heat of formation + Delta-G solvation = -168.670426 kcal Electronic energy + Delta-G solvation = -25850.828526 eV Core-core repulsion = 21377.267295 eV Total energy + Delta-G solvation = -4473.561231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.22453 -50.04221 -48.73402 -48.68470 -40.82730 -39.61231 -35.59053 -34.31065 -33.13499 -31.89461 -30.93619 -29.41250 -27.06623 -25.01523 -24.20187 -23.79026 -22.53318 -21.46628 -19.81941 -19.54641 -19.48019 -18.97078 -17.86424 -17.43706 -17.28122 -16.93286 -16.73278 -16.30163 -15.94938 -15.61312 -15.55545 -15.25758 -15.16688 -15.05054 -14.83302 -14.77497 -14.72453 -14.36074 -14.12341 -13.92009 -13.76032 -13.56337 -13.46038 -13.10454 -12.87314 -12.54974 -12.45358 -11.98072 -11.84946 -11.69798 -11.52965 -10.78911 -10.62916 -10.07170 -9.59815 -9.31957 -8.29984 -6.35053 -0.60139 -0.06349 0.50881 0.56460 1.36873 1.38636 1.49969 1.51714 2.13389 2.35040 2.53965 2.84384 2.88045 3.04491 3.17423 3.33639 3.35568 3.64311 3.81977 3.97949 4.08878 4.11328 4.29485 4.35884 4.52790 4.58181 4.70022 4.81025 4.85357 4.97220 5.02027 5.06140 5.18600 5.25340 5.46604 5.53427 5.56152 5.60433 5.92922 6.08330 6.27030 6.71221 7.28648 8.86270 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002998 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.425153 B = 9338.713310 C =10359.055746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.518 4.518 8 H 0.031 0.969 9 C 0.020 3.980 10 C -0.062 4.062 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.073 4.073 15 C -0.043 4.043 16 C -0.084 4.084 17 C -0.068 4.068 18 C -0.164 4.164 19 C 0.519 3.481 20 F -0.176 7.176 21 F -0.174 7.174 22 F -0.176 7.176 23 C -0.098 4.098 24 C 0.098 3.902 25 F -0.131 7.131 26 C -0.109 4.109 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.623 -15.577 -9.786 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.556 4.556 8 H 0.049 0.951 9 C -0.017 4.017 10 C -0.062 4.062 11 C -0.141 4.141 12 C -0.132 4.132 13 C -0.133 4.133 14 C -0.073 4.073 15 C -0.044 4.044 16 C -0.102 4.102 17 C -0.086 4.086 18 C -0.166 4.166 19 C 0.465 3.535 20 F -0.157 7.157 21 F -0.155 7.155 22 F -0.157 7.157 23 C -0.117 4.117 24 C 0.079 3.921 25 F -0.109 7.109 26 C -0.127 4.127 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.525 -15.494 -9.785 23.384 hybrid contribution -0.141 0.837 0.104 0.855 sum 14.384 -14.657 -9.681 22.704 Atomic orbital electron populations 1.70049 1.08243 1.28250 1.52244 1.25936 0.95547 1.03219 0.94010 0.85707 0.79556 0.78392 0.79348 1.19031 1.20958 1.16960 1.21131 0.90630 0.93050 1.50800 0.95096 1.18672 0.94456 0.90967 0.97649 1.20105 0.95311 0.97145 0.93599 1.21338 0.99254 0.95770 0.97762 1.21301 0.98865 0.94020 0.99000 1.21270 1.00491 1.00235 0.91272 1.18647 1.02639 0.93753 0.92227 1.19164 0.93410 0.97110 0.94739 1.21333 0.99197 0.98184 0.91520 1.21175 0.95825 0.93913 0.97711 1.19823 0.97804 1.04764 0.94173 1.18020 0.74052 0.77010 0.84415 1.93241 1.89620 1.36596 1.96246 1.93213 1.78738 1.81610 1.61970 1.93206 1.31856 1.96345 1.94311 1.20895 1.00873 0.99114 0.90814 1.17487 0.86376 1.00937 0.87296 1.91525 1.62354 1.94818 1.62248 1.21094 0.99560 0.94027 0.98001 0.92359 0.94953 0.95249 0.85883 0.83098 0.84439 0.83204 0.81640 0.81467 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.25 13.96 21.45 0.30 -57.96 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.95 42.91 27.47 68.60 1.88 44.80 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.52 -29.20 9.65 25.60 0.25 -28.95 16 8 H 0.03 1.95 7.98 -2.91 -0.02 1.92 16 9 C 0.02 0.91 4.17 29.10 0.12 1.03 16 10 C -0.06 -2.48 5.06 -19.90 -0.10 -2.58 16 11 C -0.12 -4.38 9.69 22.31 0.22 -4.16 16 12 C -0.11 -3.31 10.03 22.24 0.22 -3.08 16 13 C -0.11 -3.25 8.87 22.48 0.20 -3.05 16 14 C -0.07 -2.22 5.32 -20.04 -0.11 -2.32 16 15 C -0.04 -1.10 5.48 -20.01 -0.11 -1.21 16 16 C -0.08 -1.86 9.52 22.48 0.21 -1.64 16 17 C -0.07 -1.21 9.38 22.24 0.21 -1.01 16 18 C -0.16 -2.91 5.46 -19.83 -0.11 -3.02 16 19 C 0.52 8.74 3.36 71.24 0.24 8.97 16 20 F -0.18 -3.10 17.30 44.97 0.78 -2.32 16 21 F -0.17 -3.02 16.45 44.97 0.74 -2.28 16 22 F -0.18 -3.01 16.45 44.97 0.74 -2.27 16 23 C -0.10 -1.79 9.36 22.28 0.21 -1.58 16 24 C 0.10 2.23 7.16 22.59 0.16 2.39 16 25 F -0.13 -3.18 15.90 44.97 0.71 -2.46 16 26 C -0.11 -3.92 9.17 22.49 0.21 -3.71 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.03 1.45 7.14 -2.39 -0.02 1.44 16 29 H 0.03 1.31 7.51 -2.38 -0.02 1.29 16 30 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.14 3.22 7.78 -2.91 -0.02 3.20 16 33 H 0.15 3.31 8.05 -2.91 -0.02 3.29 16 34 H 0.17 2.20 7.59 -2.91 -0.02 2.18 16 35 H 0.17 2.33 7.59 -2.91 -0.02 2.31 16 36 H 0.12 4.24 8.05 -2.91 -0.02 4.21 16 Total: -1.00 -64.49 331.54 8.51 -55.98 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.08 Total: 9.39 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 2.28 Total: -42.87 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.30 Total: -57.96 kcal Atomic # 9 Polarization: -12.31 SS G_CDS: 2.97 Total: -9.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -64.49 8.51 -55.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.691 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds