Wall clock time and date at job start Tue Mar 31 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35908 * 116.99812 * 2 1 4 4 C 1.38518 * 120.08736 * 0.24782 * 3 2 1 5 5 C 1.38246 * 120.13855 * 180.30176 * 4 3 2 6 6 C 1.38509 * 120.31130 * 359.72761 * 5 4 3 7 7 F 1.35104 * 119.91582 * 179.97438 * 6 5 4 8 8 C 1.38414 * 120.16867 * 359.97438 * 6 5 4 9 9 F 1.35102 * 120.07221 * 179.97438 * 8 6 5 10 10 C 1.39532 * 119.85637 * 359.97438 * 8 6 5 11 11 C 1.48220 * 120.15243 * 180.02562 * 10 8 6 12 12 C 1.39319 * 120.13898 * 89.98281 * 11 10 8 13 13 C 1.37975 * 119.96513 * 180.02562 * 12 11 10 14 14 C 1.38665 * 120.25141 * 0.02562 * 13 12 11 15 15 F 1.35098 * 119.86657 * 179.97438 * 14 13 12 16 16 C 1.38342 * 120.27555 * 359.69815 * 14 13 12 17 17 C 1.38697 * 120.02626 * 0.55696 * 16 14 13 18 18 O 1.35678 * 120.11986 * 179.74443 * 17 16 14 19 19 C 1.34810 * 117.00303 * 5.60101 * 18 17 16 20 20 H 1.07997 * 119.99726 * 354.93157 * 19 18 17 21 21 C 1.38635 * 120.00214 * 174.66309 * 19 18 17 22 22 N 1.31563 * 119.99832 * 0.26943 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 180.27612 * 21 19 18 24 24 H 1.48502 * 109.47151 * 89.99846 * 23 21 19 25 25 H 1.48502 * 109.46896 * 209.99655 * 23 21 19 26 26 H 1.48491 * 109.47129 * 329.99548 * 23 21 19 27 27 H 1.09008 * 109.47324 * 300.00081 * 1 2 3 28 28 H 1.08997 * 109.47414 * 60.00101 * 1 2 3 29 29 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.93001 * 0.03065 * 4 3 2 31 31 H 1.08004 * 119.84576 * 179.74807 * 5 4 3 32 32 H 1.08001 * 120.01252 * 0.04280 * 12 11 10 33 33 H 1.08002 * 119.87403 * 179.97438 * 13 12 11 34 34 H 1.08000 * 119.98757 * 180.29952 * 16 14 13 35 35 H 0.97004 * 120.00211 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2933 2.3738 0.0052 5 6 1.9197 3.6062 -0.0011 6 6 3.3024 3.6875 -0.0069 7 9 3.9063 4.8960 -0.0136 8 6 4.0671 2.5337 -0.0060 9 9 5.4156 2.6153 -0.0122 10 6 3.4421 1.2862 0.0014 11 6 4.2545 0.0465 0.0031 12 6 4.6431 -0.5336 1.2087 13 6 5.3998 -1.6874 1.2061 14 6 5.7765 -2.2730 0.0069 15 9 6.5179 -3.4023 0.0134 16 6 5.3915 -1.7087 -1.1961 17 6 4.6353 -0.5461 -1.2069 18 8 4.2611 0.0117 -2.3857 19 6 4.5562 -0.6738 -3.5083 20 1 5.1395 -1.5808 -3.4495 21 6 4.1063 -0.2175 -4.7377 22 7 3.3957 0.8874 -4.8094 23 14 4.5088 -1.1717 -6.2924 24 1 3.4404 -2.1701 -6.5510 25 1 4.5977 -0.2334 -7.4400 26 1 5.8082 -1.8700 -6.1222 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2148 2.3176 0.0097 31 1 1.3282 4.5098 -0.0011 32 1 4.3518 -0.0806 2.1448 33 1 5.7005 -2.1356 2.1415 34 1 5.6835 -2.1714 -2.1273 35 1 3.0806 1.2065 -5.6695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240433517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:15 Heat of formation + Delta-G solvation = -142.353847 kcal Electronic energy + Delta-G solvation = -27483.837881 eV Core-core repulsion = 22999.045033 eV Total energy + Delta-G solvation = -4484.792848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.02818 -48.31710 -48.09670 -40.03058 -38.87237 -36.86293 -36.28266 -32.45035 -32.04108 -29.48173 -29.35805 -28.28703 -26.98226 -25.49392 -23.40662 -22.00813 -21.91175 -20.99419 -18.33960 -18.27166 -17.59639 -17.30353 -16.93970 -16.08307 -15.90289 -15.44090 -15.33744 -15.23975 -15.02842 -14.99683 -14.53382 -14.49068 -14.27593 -14.03370 -13.57302 -13.38770 -13.25813 -12.83936 -12.52189 -12.46918 -11.99555 -11.97965 -11.75421 -11.54289 -11.24055 -10.78159 -10.76587 -10.70576 -10.63549 -10.50873 -9.65226 -8.94672 -8.56511 -8.12720 -7.88585 -7.42218 -6.56107 -4.15479 1.20413 1.33039 1.79838 2.15026 3.07884 3.08827 3.13634 3.30432 3.62288 3.87484 4.14450 4.28668 4.66156 4.80640 4.82709 4.95459 5.04462 5.11605 5.15240 5.25038 5.31219 5.46991 5.55425 5.60543 5.71766 5.91197 6.01180 6.08075 6.13998 6.31630 6.41115 6.68713 6.81724 6.85646 6.96724 6.99876 7.22762 7.51328 7.61324 7.86593 8.88159 9.52585 10.60185 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.006215 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.832276 B = 4504.399892 C = 5737.790056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.170 3.830 4 C -0.196 4.196 5 C -0.088 4.088 6 C 0.023 3.977 7 F -0.135 7.135 8 C 0.125 3.875 9 F -0.118 7.118 10 C -0.048 4.048 11 C -0.138 4.138 12 C -0.022 4.022 13 C -0.249 4.249 14 C 0.149 3.851 15 F -0.151 7.151 16 C -0.270 4.270 17 C 0.197 3.803 18 O -0.155 6.155 19 C -0.396 4.396 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.852 5.852 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 1.238 9.789 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.123 3.877 4 C -0.215 4.215 5 C -0.107 4.107 6 C 0.003 3.997 7 F -0.114 7.114 8 C 0.105 3.895 9 F -0.096 7.096 10 C -0.050 4.050 11 C -0.140 4.140 12 C -0.040 4.040 13 C -0.268 4.268 14 C 0.130 3.870 15 F -0.129 7.129 16 C -0.291 4.291 17 C 0.140 3.860 18 O -0.056 6.056 19 C -0.471 4.471 20 H 0.112 0.888 21 C -0.161 4.161 22 N -0.485 5.485 23 Si 0.765 3.235 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.913 1.415 9.509 11.287 hybrid contribution 0.472 -0.341 -0.970 1.132 sum -5.441 1.074 8.539 10.182 Atomic orbital electron populations 1.23110 0.78586 1.04120 1.01172 1.86211 1.20931 1.25699 1.87578 1.18679 0.90575 0.84680 0.93784 1.20964 1.00436 0.91026 1.09056 1.20685 0.91460 0.98854 0.99737 1.17336 0.91118 0.79416 1.11816 1.91480 1.83680 1.41578 1.94685 1.17348 0.77520 0.91972 1.02689 1.91524 1.27841 1.96808 1.93426 1.17510 0.90258 0.91478 1.05709 1.17302 1.07611 0.97779 0.91269 1.20437 0.94341 0.93494 0.95767 1.20399 1.09540 1.00804 0.96095 1.17512 0.92250 0.82924 0.94353 1.91417 1.74658 1.49297 1.97557 1.20961 1.09297 1.01141 0.97657 1.18902 0.90532 0.89571 0.86950 1.83989 1.67767 1.43144 1.10671 1.21386 1.35013 1.08597 0.82152 0.88830 1.25298 0.95729 0.96521 0.98540 1.70047 1.32263 1.19891 1.26334 0.85710 0.79277 0.78861 0.79666 1.19719 1.20108 1.18992 0.92790 0.92333 0.88174 0.84110 0.83874 0.85916 0.86021 0.84091 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -5.02 9.95 -19.45 -0.19 -5.21 16 3 C 0.17 3.01 6.69 -38.89 -0.26 2.75 16 4 C -0.20 -2.82 9.03 -39.48 -0.36 -3.18 16 5 C -0.09 -1.27 10.01 -39.48 -0.40 -1.67 16 6 C 0.02 0.41 7.29 -39.42 -0.29 0.12 16 7 F -0.14 -2.36 17.17 2.25 0.04 -2.32 16 8 C 0.13 2.48 7.28 -39.03 -0.28 2.20 16 9 F -0.12 -2.48 16.73 2.25 0.04 -2.44 16 10 C -0.05 -0.96 4.85 -104.72 -0.51 -1.47 16 11 C -0.14 -2.93 4.50 -104.73 -0.47 -3.40 16 12 C -0.02 -0.40 9.77 -39.28 -0.38 -0.78 16 13 C -0.25 -4.45 10.01 -39.52 -0.40 -4.85 16 14 C 0.15 2.98 7.29 -39.39 -0.29 2.69 16 15 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 16 C -0.27 -6.06 9.14 -39.37 -0.36 -6.42 16 17 C 0.20 4.75 6.65 -38.75 -0.26 4.50 16 18 O -0.15 -4.30 9.21 0.33 0.00 -4.30 16 19 C -0.40 -10.83 9.49 30.88 0.29 -10.54 16 20 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 21 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 22 N -0.85 -24.20 13.67 55.48 0.76 -23.44 16 23 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 27 H 0.05 0.47 7.65 -51.92 -0.40 0.08 16 28 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.14 1.52 6.29 -52.49 -0.33 1.19 16 31 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -31.17 325.25 -5.02 -36.19 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -2.52 Total: 1.97 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.06 Total: -17.66 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.76 Total: -23.44 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.19 Total: -9.51 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.12 Total: -7.59 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.17 -5.02 -36.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240433517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.167 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds