Wall clock time and date at job start Tue Mar 31 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35908 * 116.99812 * 2 1 4 4 C 1.38518 * 120.08736 * 0.24782 * 3 2 1 5 5 C 1.38246 * 120.13855 * 180.30176 * 4 3 2 6 6 C 1.38509 * 120.31130 * 359.72761 * 5 4 3 7 7 F 1.35104 * 119.91582 * 179.97438 * 6 5 4 8 8 C 1.38414 * 120.16867 * 359.97438 * 6 5 4 9 9 F 1.35102 * 120.07221 * 179.97438 * 8 6 5 10 10 C 1.39532 * 119.85637 * 359.97438 * 8 6 5 11 11 C 1.48220 * 120.15243 * 180.02562 * 10 8 6 12 12 C 1.39319 * 120.13898 * 89.98281 * 11 10 8 13 13 C 1.37975 * 119.96513 * 180.02562 * 12 11 10 14 14 C 1.38665 * 120.25141 * 0.02562 * 13 12 11 15 15 F 1.35098 * 119.86657 * 179.97438 * 14 13 12 16 16 C 1.38342 * 120.27555 * 359.69815 * 14 13 12 17 17 C 1.38697 * 120.02626 * 0.55696 * 16 14 13 18 18 O 1.35678 * 120.11986 * 179.74443 * 17 16 14 19 19 C 1.34810 * 117.00303 * 5.60101 * 18 17 16 20 20 H 1.07997 * 119.99726 * 354.93157 * 19 18 17 21 21 C 1.38635 * 120.00214 * 174.66309 * 19 18 17 22 22 N 1.31563 * 119.99832 * 0.26943 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 180.27612 * 21 19 18 24 24 H 1.48502 * 109.47151 * 89.99846 * 23 21 19 25 25 H 1.48502 * 109.46896 * 209.99655 * 23 21 19 26 26 H 1.48491 * 109.47129 * 329.99548 * 23 21 19 27 27 H 1.09008 * 109.47324 * 300.00081 * 1 2 3 28 28 H 1.08997 * 109.47414 * 60.00101 * 1 2 3 29 29 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.93001 * 0.03065 * 4 3 2 31 31 H 1.08004 * 119.84576 * 179.74807 * 5 4 3 32 32 H 1.08001 * 120.01252 * 0.04280 * 12 11 10 33 33 H 1.08002 * 119.87403 * 179.97438 * 13 12 11 34 34 H 1.08000 * 119.98757 * 180.29952 * 16 14 13 35 35 H 0.97004 * 120.00211 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2933 2.3738 0.0052 5 6 1.9197 3.6062 -0.0011 6 6 3.3024 3.6875 -0.0069 7 9 3.9063 4.8960 -0.0136 8 6 4.0671 2.5337 -0.0060 9 9 5.4156 2.6153 -0.0122 10 6 3.4421 1.2862 0.0014 11 6 4.2545 0.0465 0.0031 12 6 4.6431 -0.5336 1.2087 13 6 5.3998 -1.6874 1.2061 14 6 5.7765 -2.2730 0.0069 15 9 6.5179 -3.4023 0.0134 16 6 5.3915 -1.7087 -1.1961 17 6 4.6353 -0.5461 -1.2069 18 8 4.2611 0.0117 -2.3857 19 6 4.5562 -0.6738 -3.5083 20 1 5.1395 -1.5808 -3.4495 21 6 4.1063 -0.2175 -4.7377 22 7 3.3957 0.8874 -4.8094 23 14 4.5088 -1.1717 -6.2924 24 1 3.4404 -2.1701 -6.5510 25 1 4.5977 -0.2334 -7.4400 26 1 5.8082 -1.8700 -6.1222 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2148 2.3176 0.0097 31 1 1.3282 4.5098 -0.0011 32 1 4.3518 -0.0806 2.1448 33 1 5.7005 -2.1356 2.1415 34 1 5.6835 -2.1714 -2.1273 35 1 3.0806 1.2065 -5.6695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240433517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:14 Heat of formation + Delta-G solvation = -160.341045 kcal Electronic energy + Delta-G solvation = -27484.617864 eV Core-core repulsion = 22999.045033 eV Total energy + Delta-G solvation = -4485.572831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.46713 -49.89958 -49.54026 -41.40261 -40.48308 -38.27660 -37.83814 -34.36529 -33.49535 -31.10041 -30.67396 -29.73616 -28.04341 -27.42419 -24.83149 -23.61251 -23.29472 -22.52060 -20.13673 -19.65358 -19.22432 -18.64424 -18.35441 -17.53802 -17.27916 -17.10970 -16.90962 -16.61263 -16.51829 -16.46485 -15.99820 -15.95376 -15.70277 -15.48329 -15.34063 -15.13629 -14.81861 -14.14393 -13.92545 -13.79984 -13.60771 -13.34498 -13.10410 -12.91645 -12.86098 -12.39844 -12.34539 -12.16321 -11.99342 -11.77949 -11.52012 -10.85221 -9.92792 -9.76393 -9.17560 -9.14171 -8.52053 -6.20633 -0.11497 0.02105 0.16552 0.51014 1.32468 1.40569 1.48649 2.11098 2.12925 2.36474 2.56773 2.90317 3.02245 3.19599 3.37087 3.40982 3.54352 3.82029 3.94728 3.96674 4.16668 4.17692 4.38763 4.42324 4.46125 4.56932 4.75613 4.81449 4.83554 4.93988 5.00054 5.04499 5.16006 5.22668 5.34464 5.47672 5.60409 5.92723 5.99006 6.36089 6.91059 7.64876 8.68834 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.006215 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.832276 B = 4504.399892 C = 5737.790056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.160 3.840 4 C -0.181 4.181 5 C -0.071 4.071 6 C 0.009 3.991 7 F -0.139 7.139 8 C 0.094 3.906 9 F -0.137 7.137 10 C -0.082 4.082 11 C -0.137 4.137 12 C -0.020 4.020 13 C -0.219 4.219 14 C 0.141 3.859 15 F -0.144 7.144 16 C -0.286 4.286 17 C 0.165 3.835 18 O -0.200 6.200 19 C -0.421 4.421 20 H 0.097 0.903 21 C -0.009 4.009 22 N -0.904 5.904 23 Si 1.011 2.989 24 H -0.260 1.260 25 H -0.269 1.269 26 H -0.258 1.258 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.129 0.871 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 0.876 11.616 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.113 3.887 4 C -0.199 4.199 5 C -0.089 4.089 6 C -0.011 4.011 7 F -0.118 7.118 8 C 0.074 3.926 9 F -0.116 7.116 10 C -0.084 4.084 11 C -0.139 4.139 12 C -0.038 4.038 13 C -0.238 4.238 14 C 0.122 3.878 15 F -0.122 7.122 16 C -0.306 4.306 17 C 0.112 3.888 18 O -0.104 6.104 19 C -0.496 4.496 20 H 0.115 0.885 21 C -0.209 4.209 22 N -0.540 5.540 23 Si 0.831 3.169 24 H -0.185 1.185 25 H -0.193 1.193 26 H -0.182 1.182 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.202 0.798 31 H 0.205 0.795 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.147 0.853 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.478 1.025 11.391 13.665 hybrid contribution 0.921 -0.293 -1.214 1.552 sum -6.557 0.733 10.177 12.129 Atomic orbital electron populations 1.23490 0.75777 1.05855 1.02933 1.86165 1.23943 1.25903 1.87458 1.18884 0.90071 0.86092 0.93610 1.21454 1.02366 0.89631 1.06459 1.21206 0.90181 1.00644 0.96870 1.17614 0.92293 0.78618 1.12573 1.91464 1.84018 1.41510 1.94796 1.17699 0.77024 0.93157 1.04748 1.91454 1.29302 1.96965 1.93878 1.17659 0.91636 0.90930 1.08172 1.17762 1.06800 0.98106 0.91186 1.20942 0.93359 0.93257 0.96217 1.20917 1.06561 0.99520 0.96797 1.17584 0.92640 0.83330 0.94280 1.91433 1.74434 1.48843 1.97515 1.21013 1.09834 1.01226 0.98503 1.19440 0.91477 0.90673 0.87202 1.83969 1.70278 1.44608 1.11555 1.21780 1.35739 1.09136 0.82991 0.88541 1.26446 0.95378 0.97476 1.01592 1.70170 1.34618 1.22037 1.27218 0.84690 0.79482 0.77600 0.75146 1.18501 1.19315 1.18178 0.89311 0.92056 0.86742 0.79757 0.79515 0.82113 0.81765 0.85295 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -10.73 9.95 -92.51 -0.92 -11.65 16 3 C 0.16 5.54 6.69 22.72 0.15 5.69 16 4 C -0.18 -4.67 9.03 22.34 0.20 -4.47 16 5 C -0.07 -1.84 10.01 22.34 0.22 -1.62 16 6 C 0.01 0.32 7.29 22.38 0.16 0.48 16 7 F -0.14 -4.82 17.17 44.97 0.77 -4.05 16 8 C 0.09 3.83 7.28 22.62 0.16 3.99 16 9 F -0.14 -6.09 16.73 44.97 0.75 -5.33 16 10 C -0.08 -3.35 4.85 -19.93 -0.10 -3.44 16 11 C -0.14 -5.91 4.50 -19.93 -0.09 -6.00 16 12 C -0.02 -0.69 9.77 22.47 0.22 -0.47 16 13 C -0.22 -7.23 10.01 22.31 0.22 -7.01 16 14 C 0.14 5.52 7.29 22.40 0.16 5.68 16 15 F -0.14 -5.27 17.26 44.97 0.78 -4.50 16 16 C -0.29 -13.25 9.14 22.40 0.20 -13.05 16 17 C 0.17 8.34 6.65 22.81 0.15 8.49 16 18 O -0.20 -11.83 9.21 -21.73 -0.20 -12.03 16 19 C -0.42 -24.39 9.49 67.91 0.64 -23.75 16 20 H 0.10 5.26 5.21 -2.91 -0.02 5.24 16 21 C -0.01 -0.52 5.49 84.83 0.47 -0.05 16 22 N -0.90 -53.81 13.67 21.61 0.30 -53.51 16 23 Si 1.01 42.61 29.55 68.60 2.03 44.64 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 H 0.09 1.18 7.65 -2.38 -0.02 1.16 16 28 H 0.06 1.21 7.67 -2.39 -0.02 1.19 16 29 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.19 3.06 6.29 -2.91 -0.02 3.04 16 31 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 33 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.13 6.14 5.64 -2.91 -0.02 6.12 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -74.18 325.25 8.58 -65.60 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.17 Total: 14.97 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.90 Total: -34.14 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.30 Total: -53.51 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.12 Total: -23.68 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 2.30 Total: -13.88 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.18 8.58 -65.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240433517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.746 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds