Wall clock time and date at job start Tue Mar 31 2020 14:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99536 * 2 1 4 4 H 1.48498 * 109.47474 * 269.99947 * 3 2 1 5 5 H 1.48503 * 109.47191 * 30.00446 * 3 2 1 6 6 H 1.48507 * 109.46787 * 149.99742 * 3 2 1 7 7 C 1.37873 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99778 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.38323 * 119.87640 * 89.99781 * 10 9 7 12 12 C 1.38020 * 120.11860 * 179.74968 * 11 10 9 13 13 C 1.39339 * 119.87594 * 0.24808 * 12 11 10 14 14 C 1.48396 * 120.11861 * 179.97438 * 13 12 11 15 15 C 1.39320 * 120.11065 * 58.44164 * 14 13 12 16 16 C 1.38227 * 119.85293 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.96266 * 180.02562 * 16 15 14 18 18 C 1.38566 * 120.07032 * 0.02562 * 16 15 14 19 19 C 1.38262 * 120.21359 * 359.97111 * 18 16 15 20 20 C 1.38051 * 120.15346 * 359.76935 * 19 18 16 21 21 C 1.50697 * 120.03732 * 180.27771 * 20 19 18 22 22 F 1.39902 * 109.46950 * 353.36139 * 21 20 19 23 23 F 1.39899 * 109.47356 * 113.36304 * 21 20 19 24 24 F 1.39904 * 109.46980 * 233.35907 * 21 20 19 25 25 C 1.39333 * 119.76166 * 0.02562 * 13 12 11 26 26 C 1.38019 * 119.87424 * 359.97438 * 25 13 12 27 27 H 0.97000 * 120.00611 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47084 * 59.99660 * 9 7 2 29 29 H 1.09004 * 109.46988 * 299.99777 * 9 7 2 30 30 H 1.07995 * 119.94000 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.06060 * 180.23789 * 12 11 10 32 32 H 1.08002 * 120.07436 * 0.02949 * 15 14 13 33 33 H 1.07992 * 119.88927 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.92278 * 180.02562 * 19 18 16 35 35 H 1.07997 * 120.06221 * 179.97438 * 25 13 12 36 36 H 1.08004 * 119.93471 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 6 2.6773 -4.1688 1.1981 12 6 3.5702 -5.2212 1.2041 13 6 4.0255 -5.7521 -0.0010 14 6 4.9860 -6.8833 -0.0008 15 6 4.6542 -8.0818 0.6272 16 6 5.5528 -9.1322 0.6237 17 9 5.2331 -10.2956 1.2316 18 6 6.7810 -8.9931 -0.0025 19 6 7.1132 -7.8050 -0.6267 20 6 6.2205 -6.7520 -0.6333 21 6 6.5827 -5.4603 -1.3198 22 9 7.9160 -5.5136 -1.7402 23 9 5.7512 -5.2725 -2.4291 24 9 6.4172 -4.3956 -0.4275 25 6 3.5764 -5.2164 -1.2063 26 6 2.6834 -4.1641 -1.2006 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.3234 -3.7567 2.1315 31 1 3.9156 -5.6322 2.1412 32 1 3.6967 -8.1903 1.1149 33 1 7.4809 -9.8155 -0.0031 34 1 8.0716 -7.7019 -1.1138 35 1 3.9264 -5.6239 -2.1432 36 1 2.3344 -3.7484 -2.1344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240532395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:56 Heat of formation + Delta-G solvation = -150.080687 kcal Electronic energy + Delta-G solvation = -26775.128102 eV Core-core repulsion = 22302.372983 eV Total energy + Delta-G solvation = -4472.755119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.15053 -49.30747 -47.72558 -47.51179 -39.88835 -38.25884 -33.90279 -32.46100 -31.88119 -30.41096 -30.25224 -27.12118 -25.78315 -24.04037 -22.85425 -22.21141 -21.73266 -20.24709 -18.63978 -18.48634 -18.38620 -17.74179 -16.51112 -16.36806 -15.98126 -15.75558 -15.16864 -14.78638 -14.65028 -14.54459 -14.42669 -14.28975 -13.89113 -13.84113 -13.71588 -13.68016 -13.57928 -12.86674 -12.80091 -12.60441 -12.54828 -11.96827 -11.87504 -11.51907 -11.34774 -11.08201 -10.79401 -10.55875 -10.30164 -9.68122 -9.55126 -9.40014 -9.26018 -8.46210 -8.40744 -7.83322 -6.07946 -4.12085 0.42065 0.70065 1.85938 1.95297 2.62355 2.98726 3.29301 3.35562 3.40195 3.64515 3.78498 3.96379 4.23752 4.32733 4.40909 4.43682 4.54972 4.66829 4.94265 5.24846 5.26625 5.37759 5.41320 5.45581 5.63639 5.64774 5.82858 5.89425 6.09030 6.10276 6.33103 6.51729 6.54900 6.86798 7.05362 7.08631 7.42929 7.58874 7.75910 7.87827 8.26113 8.93234 9.52240 11.01911 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003556 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.518056 B = 7872.843889 C = 8871.259517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.014 4.014 11 C -0.126 4.126 12 C -0.088 4.088 13 C -0.123 4.123 14 C 0.064 3.936 15 C -0.151 4.151 16 C 0.134 3.866 17 F -0.132 7.132 18 C -0.167 4.167 19 C -0.041 4.041 20 C -0.193 4.193 21 C 0.512 3.488 22 F -0.183 7.183 23 F -0.169 7.169 24 F -0.164 7.164 25 C -0.104 4.104 26 C -0.123 4.123 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.339 -18.348 -0.786 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.014 4.014 11 C -0.144 4.144 12 C -0.106 4.106 13 C -0.123 4.123 14 C 0.064 3.936 15 C -0.169 4.169 16 C 0.114 3.886 17 F -0.111 7.111 18 C -0.186 4.186 19 C -0.059 4.059 20 C -0.195 4.195 21 C 0.458 3.542 22 F -0.164 7.164 23 F -0.150 7.150 24 F -0.145 7.145 25 C -0.122 4.122 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.180 -18.233 -0.775 22.511 hybrid contribution 0.477 0.962 0.016 1.074 sum 13.657 -17.270 -0.760 22.031 Atomic orbital electron populations 1.69951 1.06038 1.26910 1.50347 1.25001 0.94884 0.99281 0.95066 0.86532 0.79869 0.83057 0.78257 1.20526 1.21130 1.19735 1.21033 0.93099 0.89699 1.51257 0.92363 1.18431 0.92607 0.89627 0.98608 1.20889 0.94631 0.93923 0.91912 1.21033 0.98282 0.96487 0.98641 1.20969 0.96983 0.96783 0.95898 1.18375 1.01416 0.97803 0.94737 1.18409 0.91065 0.92916 0.91243 1.21260 1.00951 0.91523 1.03214 1.17761 0.94264 0.82028 0.94525 1.91540 1.92976 1.45952 1.80599 1.21084 0.96432 0.99410 1.01631 1.20778 0.98846 0.90699 0.95620 1.20161 0.97599 0.94704 1.07014 1.18079 0.73994 0.84930 0.77210 1.93145 1.35853 1.96621 1.90781 1.93165 1.70951 1.95859 1.55070 1.93288 1.95012 1.58592 1.67574 1.21550 0.97238 0.96613 0.96757 1.21042 0.98135 0.96338 0.98624 0.92784 0.95100 0.95109 0.85883 0.86713 0.83330 0.83708 0.83469 0.85312 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.19 9.09 -34.44 -0.31 -14.50 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.11 5.10 -29.03 -0.15 0.96 16 10 C -0.01 -0.28 5.07 -104.56 -0.53 -0.81 16 11 C -0.13 -2.36 9.68 -39.63 -0.38 -2.75 16 12 C -0.09 -1.41 9.65 -39.25 -0.38 -1.78 16 13 C -0.12 -1.89 3.97 -104.90 -0.42 -2.31 16 14 C 0.06 0.82 5.35 -104.91 -0.56 0.26 16 15 C -0.15 -1.65 9.63 -39.18 -0.38 -2.03 16 16 C 0.13 1.32 7.29 -39.46 -0.29 1.03 16 17 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 18 C -0.17 -1.39 10.02 -39.45 -0.40 -1.79 16 19 C -0.04 -0.38 9.42 -39.64 -0.37 -0.75 16 20 C -0.19 -2.30 5.40 -104.29 -0.56 -2.86 16 21 C 0.51 6.86 2.79 36.00 0.10 6.96 16 22 F -0.18 -2.20 16.00 2.25 0.04 -2.16 16 23 F -0.17 -2.40 13.37 2.25 0.03 -2.37 16 24 F -0.16 -2.61 15.93 2.25 0.04 -2.58 16 25 C -0.10 -1.71 7.74 -39.25 -0.30 -2.02 16 26 C -0.12 -2.35 9.68 -39.63 -0.38 -2.74 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.02 7.17 -52.49 -0.38 0.64 16 35 H 0.13 1.92 5.77 -52.49 -0.30 1.62 16 36 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -29.38 327.53 -7.80 -37.18 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.17 Total: -1.24 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -5.41 Total: -23.57 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.14 Total: -8.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.38 -7.80 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.903 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds