Wall clock time and date at job start Tue Mar 31 2020 14:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99536 * 2 1 4 4 H 1.48498 * 109.47474 * 269.99947 * 3 2 1 5 5 H 1.48503 * 109.47191 * 30.00446 * 3 2 1 6 6 H 1.48507 * 109.46787 * 149.99742 * 3 2 1 7 7 C 1.37873 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99778 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.38323 * 119.87640 * 89.99781 * 10 9 7 12 12 C 1.38020 * 120.11860 * 179.74968 * 11 10 9 13 13 C 1.39339 * 119.87594 * 0.24808 * 12 11 10 14 14 C 1.48396 * 120.11861 * 179.97438 * 13 12 11 15 15 C 1.39320 * 120.11065 * 58.44164 * 14 13 12 16 16 C 1.38227 * 119.85293 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.96266 * 180.02562 * 16 15 14 18 18 C 1.38566 * 120.07032 * 0.02562 * 16 15 14 19 19 C 1.38262 * 120.21359 * 359.97111 * 18 16 15 20 20 C 1.38051 * 120.15346 * 359.76935 * 19 18 16 21 21 C 1.50697 * 120.03732 * 180.27771 * 20 19 18 22 22 F 1.39902 * 109.46950 * 353.36139 * 21 20 19 23 23 F 1.39899 * 109.47356 * 113.36304 * 21 20 19 24 24 F 1.39904 * 109.46980 * 233.35907 * 21 20 19 25 25 C 1.39333 * 119.76166 * 0.02562 * 13 12 11 26 26 C 1.38019 * 119.87424 * 359.97438 * 25 13 12 27 27 H 0.97000 * 120.00611 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47084 * 59.99660 * 9 7 2 29 29 H 1.09004 * 109.46988 * 299.99777 * 9 7 2 30 30 H 1.07995 * 119.94000 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.06060 * 180.23789 * 12 11 10 32 32 H 1.08002 * 120.07436 * 0.02949 * 15 14 13 33 33 H 1.07992 * 119.88927 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.92278 * 180.02562 * 19 18 16 35 35 H 1.07997 * 120.06221 * 179.97438 * 25 13 12 36 36 H 1.08004 * 119.93471 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 6 2.6773 -4.1688 1.1981 12 6 3.5702 -5.2212 1.2041 13 6 4.0255 -5.7521 -0.0010 14 6 4.9860 -6.8833 -0.0008 15 6 4.6542 -8.0818 0.6272 16 6 5.5528 -9.1322 0.6237 17 9 5.2331 -10.2956 1.2316 18 6 6.7810 -8.9931 -0.0025 19 6 7.1132 -7.8050 -0.6267 20 6 6.2205 -6.7520 -0.6333 21 6 6.5827 -5.4603 -1.3198 22 9 7.9160 -5.5136 -1.7402 23 9 5.7512 -5.2725 -2.4291 24 9 6.4172 -4.3956 -0.4275 25 6 3.5764 -5.2164 -1.2063 26 6 2.6834 -4.1641 -1.2006 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.3234 -3.7567 2.1315 31 1 3.9156 -5.6322 2.1412 32 1 3.6967 -8.1903 1.1149 33 1 7.4809 -9.8155 -0.0031 34 1 8.0716 -7.7019 -1.1138 35 1 3.9264 -5.6239 -2.1432 36 1 2.3344 -3.7484 -2.1344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240532395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:55 Heat of formation + Delta-G solvation = -162.716358 kcal Electronic energy + Delta-G solvation = -26775.676026 eV Core-core repulsion = 22302.372983 eV Total energy + Delta-G solvation = -4473.303043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.20765 -50.06622 -48.74770 -48.63778 -40.91985 -39.48843 -35.64395 -34.01103 -32.74335 -31.79614 -31.64869 -28.73368 -26.82694 -25.55376 -24.03925 -23.55457 -22.86456 -21.63810 -19.61260 -19.51148 -19.43772 -18.65924 -18.52413 -17.35535 -17.08229 -16.75128 -16.45130 -16.20819 -16.05064 -15.69857 -15.50536 -15.39272 -15.04116 -14.91176 -14.81041 -14.65646 -14.49783 -14.37729 -14.26431 -13.97220 -13.68427 -13.44154 -13.25416 -13.06088 -12.68891 -12.61628 -12.51338 -12.19894 -11.81568 -11.57354 -11.41520 -10.62303 -10.33414 -10.13381 -9.80629 -9.28060 -8.22336 -6.35505 -0.44351 -0.11514 0.54169 0.54277 1.38614 1.39161 1.50904 1.63316 2.17070 2.37961 2.67522 2.85663 2.97575 3.02287 3.08630 3.36523 3.41568 3.71205 3.93752 4.03954 4.09651 4.16823 4.30204 4.39780 4.62856 4.64659 4.68861 4.88584 4.90264 5.02681 5.06411 5.11872 5.32505 5.35154 5.50787 5.51479 5.61948 5.72741 6.02457 6.05022 6.19225 6.76797 7.33129 8.86935 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003556 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.518056 B = 7872.843889 C = 8871.259517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.054 3.946 10 C -0.048 4.048 11 C -0.135 4.135 12 C -0.083 4.083 13 C -0.104 4.104 14 C 0.041 3.959 15 C -0.149 4.149 16 C 0.132 3.868 17 F -0.132 7.132 18 C -0.145 4.145 19 C -0.034 4.034 20 C -0.198 4.198 21 C 0.507 3.493 22 F -0.174 7.174 23 F -0.177 7.177 24 F -0.183 7.183 25 C -0.102 4.102 26 C -0.135 4.135 27 H 0.266 0.734 28 H 0.005 0.995 29 H 0.008 0.992 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 -20.482 -0.564 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.017 3.983 10 C -0.048 4.048 11 C -0.153 4.153 12 C -0.101 4.101 13 C -0.104 4.104 14 C 0.040 3.960 15 C -0.167 4.167 16 C 0.113 3.887 17 F -0.111 7.111 18 C -0.163 4.163 19 C -0.051 4.051 20 C -0.199 4.199 21 C 0.453 3.547 22 F -0.155 7.155 23 F -0.159 7.159 24 F -0.165 7.165 25 C -0.120 4.120 26 C -0.153 4.153 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.026 0.974 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.197 0.803 34 H 0.191 0.809 35 H 0.164 0.836 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.157 -20.380 -0.554 26.014 hybrid contribution -0.344 1.440 -0.065 1.482 sum 15.813 -18.941 -0.619 24.681 Atomic orbital electron populations 1.70067 1.07565 1.27993 1.51174 1.25885 0.95758 1.02973 0.94531 0.85479 0.78629 0.78580 0.78594 1.19718 1.20257 1.19162 1.21341 0.92988 0.91237 1.51138 0.92971 1.18151 0.92939 0.91068 0.96137 1.20552 0.96007 0.94382 0.93862 1.21065 0.99111 0.97470 0.97612 1.21233 0.95754 0.95472 0.97634 1.18644 1.00269 0.97596 0.93874 1.18185 0.91190 0.92731 0.93857 1.21265 1.01569 0.91205 1.02681 1.17828 0.94636 0.81651 0.94613 1.91551 1.93052 1.45831 1.80628 1.21461 0.95984 0.99786 0.99090 1.21068 0.99156 0.89832 0.95089 1.20130 0.97983 0.94617 1.07186 1.18356 0.74289 0.85149 0.76900 1.93156 1.35102 1.96569 1.90670 1.93139 1.71300 1.95945 1.55484 1.93249 1.95167 1.59816 1.68245 1.21705 0.96308 0.95713 0.98263 1.21021 0.99133 0.97475 0.97639 0.92495 0.97662 0.97409 0.86084 0.83621 0.82788 0.80258 0.80885 0.83630 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.53 -30.59 9.09 25.60 0.23 -30.36 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.05 2.90 5.10 29.10 0.15 3.05 16 10 C -0.05 -2.13 5.07 -19.83 -0.10 -2.23 16 11 C -0.13 -5.17 9.68 22.24 0.22 -4.95 16 12 C -0.08 -2.58 9.65 22.48 0.22 -2.36 16 13 C -0.10 -3.07 3.97 -20.04 -0.08 -3.15 16 14 C 0.04 0.94 5.35 -20.05 -0.11 0.83 16 15 C -0.15 -2.81 9.63 22.53 0.22 -2.60 16 16 C 0.13 2.08 7.29 22.35 0.16 2.25 16 17 F -0.13 -2.19 17.27 44.97 0.78 -1.41 16 18 C -0.14 -1.69 10.02 22.35 0.22 -1.46 16 19 C -0.03 -0.46 9.42 22.23 0.21 -0.26 16 20 C -0.20 -4.13 5.40 -19.65 -0.11 -4.24 16 21 C 0.51 12.67 2.79 71.23 0.20 12.87 16 22 F -0.17 -3.76 16.00 44.97 0.72 -3.04 16 23 F -0.18 -4.82 13.37 44.97 0.60 -4.22 16 24 F -0.18 -5.69 15.93 44.97 0.72 -4.98 16 25 C -0.10 -3.37 7.74 22.48 0.17 -3.19 16 26 C -0.13 -5.36 9.68 22.24 0.22 -5.15 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.01 0.29 8.09 -2.39 -0.02 0.27 16 29 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.17 1.51 7.17 -2.91 -0.02 1.49 16 35 H 0.15 4.25 5.77 -2.91 -0.02 4.23 16 36 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -66.01 327.53 8.54 -57.46 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.13 Total: 5.23 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 2.28 Total: -40.08 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.81 Total: -13.64 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.01 8.54 -57.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.253 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds