Wall clock time and date at job start Tue Mar 31 2020 14:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48496 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47113 * 299.99991 * 3 2 1 6 6 H 1.48506 * 109.47203 * 59.99828 * 3 2 1 7 7 C 1.37874 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.93771 * 270.27242 * 10 9 7 12 12 C 1.38295 * 120.24585 * 180.27595 * 11 10 9 13 13 C 1.38047 * 120.11882 * 359.44915 * 12 11 10 14 14 C 1.39310 * 119.87403 * 0.27775 * 13 12 11 15 15 C 1.48397 * 120.11943 * 180.02562 * 14 13 12 16 16 C 1.39323 * 120.10647 * 238.24884 * 15 14 13 17 17 C 1.38226 * 119.84841 * 179.73760 * 16 15 14 18 18 F 1.35099 * 119.96445 * 180.25180 * 17 16 15 19 19 C 1.38568 * 120.07441 * 0.51585 * 17 16 15 20 20 C 1.38261 * 120.21292 * 359.75788 * 19 17 16 21 21 C 1.38055 * 120.14995 * 359.97438 * 20 19 17 22 22 C 1.50699 * 120.03694 * 180.02562 * 21 20 19 23 23 F 1.39895 * 109.46962 * 353.33641 * 22 21 20 24 24 F 1.39900 * 109.47338 * 113.33849 * 22 21 20 25 25 F 1.39903 * 109.46782 * 233.34337 * 22 21 20 26 26 C 1.37992 * 119.94164 * 90.00331 * 10 9 7 27 27 H 0.97008 * 119.99751 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47037 * 59.99606 * 9 7 2 29 29 H 1.09007 * 109.47231 * 300.00667 * 9 7 2 30 30 H 1.08004 * 119.88054 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.94265 * 179.72695 * 12 11 10 32 32 H 1.08002 * 120.05940 * 180.25179 * 13 12 11 33 33 H 1.08002 * 120.07907 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.89448 * 179.74100 * 19 17 16 35 35 H 1.07998 * 119.92883 * 179.97438 * 20 19 17 36 36 H 1.08001 * 120.06584 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.6842 -4.1661 -1.1965 12 6 3.5785 -5.2210 -1.2028 13 6 4.0319 -5.7519 -0.0118 14 6 3.5825 -5.2268 1.1977 15 6 4.0668 -5.7929 2.4811 16 6 3.1595 -6.3091 3.4038 17 6 3.6169 -6.8400 4.5953 18 9 2.7396 -7.3458 5.4895 19 6 4.9738 -6.8492 4.8759 20 6 5.8762 -6.3325 3.9647 21 6 5.4298 -5.8050 2.7696 22 6 6.4157 -5.2430 1.7780 23 9 7.6930 -5.2271 2.3483 24 9 6.4278 -6.0410 0.6290 25 9 6.0414 -3.9390 1.4362 26 6 2.6769 -4.1675 1.1981 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.3358 -3.7507 -2.1305 31 1 3.9263 -5.6273 -2.1410 32 1 4.7335 -6.5730 -0.0179 33 1 2.1015 -6.2979 3.1871 34 1 5.3277 -7.2609 5.8095 35 1 6.9328 -6.3415 4.1883 36 1 2.3256 -3.7565 2.1331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240532408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:02 Heat of formation + Delta-G solvation = -162.855965 kcal Electronic energy + Delta-G solvation = -26982.282674 eV Core-core repulsion = 22508.973577 eV Total energy + Delta-G solvation = -4473.309097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.20818 -50.09545 -48.73795 -48.63757 -40.93815 -39.47683 -35.58475 -33.96293 -32.89432 -32.65092 -30.45103 -28.94258 -26.86066 -25.33248 -24.92112 -23.28597 -22.70391 -21.52691 -19.60226 -19.51457 -19.38718 -18.59831 -18.40387 -17.40782 -17.35777 -16.77895 -16.63099 -16.09784 -16.05696 -15.53862 -15.52746 -15.41077 -15.07578 -14.92153 -14.80071 -14.67483 -14.48692 -14.41051 -14.39064 -14.06579 -13.63002 -13.28465 -13.20406 -12.85033 -12.79436 -12.63497 -12.54675 -12.29588 -11.86964 -11.55296 -11.40603 -10.63037 -10.39732 -10.17085 -9.61838 -9.38448 -8.22862 -6.35451 -0.46443 -0.14335 0.51618 0.58200 1.37102 1.38100 1.51545 1.62122 2.14981 2.37652 2.65672 2.85799 2.95850 3.01487 3.08497 3.36384 3.40018 3.69173 3.91271 4.04061 4.13681 4.16070 4.31244 4.37893 4.60183 4.65420 4.68785 4.85218 4.87649 4.99834 5.03789 5.17293 5.31916 5.33996 5.51346 5.53843 5.61174 5.72969 6.00672 6.06414 6.19992 6.77026 7.33297 8.86844 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.004110 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.729392 B = 6810.767171 C = 7363.420048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.057 3.943 10 C -0.064 4.064 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.127 4.127 14 C -0.080 4.080 15 C 0.035 3.965 16 C -0.154 4.154 17 C 0.131 3.869 18 F -0.133 7.133 19 C -0.144 4.144 20 C -0.033 4.033 21 C -0.198 4.198 22 C 0.510 3.490 23 F -0.172 7.172 24 F -0.172 7.172 25 F -0.185 7.185 26 C -0.104 4.104 27 H 0.266 0.734 28 H 0.007 0.993 29 H 0.004 0.996 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.894 -17.256 7.999 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.020 3.980 10 C -0.064 4.064 11 C -0.140 4.140 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.080 4.080 15 C 0.035 3.965 16 C -0.173 4.173 17 C 0.112 3.888 18 F -0.111 7.111 19 C -0.162 4.162 20 C -0.051 4.051 21 C -0.199 4.199 22 C 0.456 3.544 23 F -0.154 7.154 24 F -0.153 7.153 25 F -0.166 7.166 26 C -0.122 4.122 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.137 0.863 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.737 -17.149 8.006 23.385 hybrid contribution -0.362 1.342 -0.248 1.411 sum 13.375 -15.807 7.758 22.112 Atomic orbital electron populations 1.70077 1.07552 1.27889 1.51321 1.25867 0.95729 1.02916 0.94561 0.85450 0.78887 0.78983 0.78095 1.19209 1.19925 1.20086 1.21372 0.92943 0.91286 1.50917 0.93071 1.18100 0.92826 0.90984 0.96043 1.20328 0.97176 0.95272 0.93608 1.21294 0.98305 0.96917 0.97502 1.21301 0.96700 0.95881 0.99079 1.21737 1.00205 1.01408 0.91050 1.18711 0.99432 0.97488 0.92412 1.18267 0.91338 0.94028 0.92892 1.21267 1.01358 1.01530 0.93138 1.17845 0.88107 0.95870 0.87027 1.91544 1.68801 1.84476 1.66300 1.21483 0.89766 1.02376 1.02577 1.21108 1.02426 0.92062 0.89456 1.20149 0.92415 1.09259 0.98081 1.18225 0.79899 0.75835 0.80398 1.93157 1.41443 1.96332 1.84422 1.93131 1.96134 1.73606 1.52405 1.93270 1.91281 1.39052 1.92982 1.20951 0.97554 0.96148 0.97584 0.92521 0.97446 0.97798 0.86306 0.83057 0.82959 0.83606 0.80026 0.80465 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.53 -30.51 9.09 25.60 0.23 -30.28 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.06 3.09 5.10 29.10 0.15 3.24 16 10 C -0.06 -2.84 5.06 -19.90 -0.10 -2.94 16 11 C -0.12 -4.71 9.69 22.31 0.22 -4.49 16 12 C -0.11 -3.47 10.03 22.24 0.22 -3.25 16 13 C -0.13 -3.77 7.75 22.48 0.17 -3.60 16 14 C -0.08 -2.61 3.96 -20.04 -0.08 -2.69 16 15 C 0.04 0.94 5.35 -20.05 -0.11 0.83 16 16 C -0.15 -3.67 9.63 22.53 0.22 -3.46 16 17 C 0.13 2.57 7.29 22.35 0.16 2.73 16 18 F -0.13 -2.71 17.26 44.97 0.78 -1.93 16 19 C -0.14 -2.05 10.02 22.35 0.22 -1.83 16 20 C -0.03 -0.52 9.42 22.23 0.21 -0.31 16 21 C -0.20 -4.53 5.40 -19.65 -0.11 -4.63 16 22 C 0.51 12.84 2.79 71.24 0.20 13.04 16 23 F -0.17 -3.72 16.00 44.97 0.72 -3.00 16 24 F -0.17 -4.22 13.38 44.97 0.60 -3.62 16 25 F -0.18 -6.00 15.96 44.97 0.72 -5.28 16 26 C -0.10 -4.13 9.30 22.48 0.21 -3.92 16 27 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 28 H 0.01 0.41 8.09 -2.38 -0.02 0.39 16 29 H 0.00 0.21 8.08 -2.38 -0.02 0.19 16 30 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.15 3.80 5.82 -2.91 -0.02 3.79 16 33 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.18 1.74 7.17 -2.91 -0.02 1.72 16 36 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -66.31 327.62 8.55 -57.77 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.13 Total: 5.63 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 2.28 Total: -40.65 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 9 Polarization: -16.65 SS G_CDS: 2.82 Total: -13.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.31 8.55 -57.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.090 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds