Wall clock time and date at job start Tue Mar 31 2020 14:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35952 * 117.00040 * 2 1 4 4 C 1.38474 * 119.98586 * 0.02562 * 3 2 1 5 5 C 1.39343 * 119.88557 * 179.97438 * 4 3 2 6 6 C 1.48272 * 120.07105 * 180.02562 * 5 4 3 7 7 C 1.39300 * 120.13757 * 309.72673 * 6 5 4 8 8 C 1.37974 * 119.97242 * 179.74704 * 7 6 5 9 9 C 1.38673 * 120.24286 * 0.52254 * 8 7 6 10 10 F 1.35102 * 119.86579 * 179.76747 * 9 8 7 11 11 C 1.38339 * 120.27192 * 359.75130 * 9 8 7 12 12 C 1.38704 * 120.02763 * 359.97438 * 11 9 8 13 13 O 1.35670 * 120.12311 * 180.02562 * 12 11 9 14 14 C 1.34816 * 116.99805 * 354.39519 * 13 12 11 15 15 H 1.07997 * 120.00109 * 5.06511 * 14 13 12 16 16 C 1.38643 * 119.99885 * 185.06793 * 14 13 12 17 17 N 1.31559 * 119.99675 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46927 * 59.99826 * 18 16 14 20 20 H 1.48496 * 109.47418 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47202 * 300.00204 * 18 16 14 22 22 C 1.39414 * 119.85958 * 359.97438 * 5 4 3 23 23 C 1.38216 * 119.97109 * 0.02562 * 22 5 4 24 24 F 1.35101 * 119.94378 * 180.28031 * 23 22 5 25 25 C 1.38644 * 120.11377 * 359.97438 * 23 22 5 26 26 F 1.35102 * 119.92784 * 179.97438 * 25 23 22 27 27 H 1.08994 * 109.47319 * 300.00323 * 1 2 3 28 28 H 1.08998 * 109.47136 * 60.00564 * 1 2 3 29 29 H 1.09005 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.05489 * 0.02562 * 4 3 2 31 31 H 1.08011 * 120.01131 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.87872 * 180.27890 * 8 7 6 33 33 H 1.08001 * 119.98643 * 179.97438 * 11 9 8 34 34 H 0.97004 * 119.99763 * 180.02562 * 17 16 14 35 35 H 1.07995 * 120.01380 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2918 2.3725 0.0005 5 6 1.9266 3.6129 0.0011 6 6 1.1228 4.8589 0.0022 7 6 0.0962 5.0298 -0.9238 8 6 -0.6530 6.1883 -0.9163 9 6 -0.3814 7.1899 0.0036 10 9 -1.1168 8.3232 0.0011 11 6 0.6394 7.0332 0.9240 12 6 1.3960 5.8707 0.9302 13 8 2.3972 5.7148 1.8324 14 6 2.6823 6.7719 2.6191 15 1 2.0708 7.6607 2.5717 16 6 3.7607 6.7178 3.4888 17 7 4.5060 5.6352 3.5460 18 14 4.1562 8.1827 4.5783 19 1 2.9972 8.4702 5.4611 20 1 5.3469 7.8739 5.4101 21 1 4.4384 9.3685 3.7301 22 6 3.3191 3.6800 0.0016 23 6 4.0664 2.5173 0.0011 24 9 5.4158 2.5830 0.0073 25 6 3.4336 1.2837 0.0005 26 9 4.1678 0.1496 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2133 2.3168 0.0014 31 1 -0.1155 4.2541 -1.6449 32 1 -1.4515 6.3173 -1.6320 33 1 0.8473 7.8163 1.6381 34 1 5.2602 5.5973 4.1548 35 1 3.8137 4.6401 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240662017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:00 Heat of formation + Delta-G solvation = -162.147679 kcal Electronic energy + Delta-G solvation = -26857.551415 eV Core-core repulsion = 22371.900243 eV Total energy + Delta-G solvation = -4485.651173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.51257 -49.86827 -49.58052 -41.39873 -40.60056 -38.58882 -37.76722 -34.35693 -33.13451 -31.26332 -30.91517 -29.68507 -28.09146 -27.41732 -24.61766 -23.98853 -23.20579 -22.42113 -20.12652 -19.74336 -19.05324 -18.61208 -18.41641 -17.62066 -17.41723 -17.05398 -16.83472 -16.59225 -16.56299 -16.49078 -15.98913 -15.91333 -15.86938 -15.44331 -15.38342 -15.09405 -14.89735 -14.20505 -14.04533 -13.81810 -13.53308 -13.15423 -13.06961 -12.89404 -12.63714 -12.44519 -12.35138 -12.25133 -12.17873 -11.88651 -11.51590 -10.83841 -10.10575 -9.63711 -9.41640 -8.93939 -8.50979 -6.19344 -0.41224 -0.00402 0.39975 0.54132 1.34783 1.43409 1.49335 1.92632 2.12562 2.25225 2.66865 2.90901 3.04706 3.21668 3.30401 3.39139 3.52951 3.60728 3.97579 4.07872 4.12980 4.22508 4.30372 4.46625 4.46687 4.57070 4.76906 4.79761 4.84620 4.91059 5.01668 5.17536 5.22933 5.26852 5.34582 5.51527 5.55603 5.92388 6.01888 6.17621 6.92419 7.63899 8.68030 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.005402 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.338274 B = 5181.934431 C = 7408.352081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.133 3.867 4 C -0.169 4.169 5 C 0.044 3.956 6 C -0.154 4.154 7 C -0.010 4.010 8 C -0.219 4.219 9 C 0.144 3.856 10 F -0.145 7.145 11 C -0.286 4.286 12 C 0.162 3.838 13 O -0.195 6.195 14 C -0.418 4.418 15 H 0.101 0.899 16 C -0.009 4.009 17 N -0.901 5.901 18 Si 1.009 2.991 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.140 4.140 23 C 0.096 3.904 24 F -0.137 7.137 25 C 0.004 3.996 26 F -0.135 7.135 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.183 0.817 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.273 0.727 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -5.759 -8.964 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.086 3.914 4 C -0.187 4.187 5 C 0.043 3.957 6 C -0.155 4.155 7 C -0.027 4.027 8 C -0.238 4.238 9 C 0.125 3.875 10 F -0.124 7.124 11 C -0.306 4.306 12 C 0.108 3.892 13 O -0.099 6.099 14 C -0.494 4.494 15 H 0.119 0.881 16 C -0.209 4.209 17 N -0.537 5.537 18 Si 0.829 3.171 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.159 4.159 23 C 0.075 3.925 24 F -0.115 7.115 25 C -0.017 4.017 26 F -0.114 7.114 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.184 0.816 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.677 -6.237 -8.782 15.166 hybrid contribution 1.008 1.086 1.024 1.801 sum -9.669 -5.150 -7.758 13.424 Atomic orbital electron populations 1.23594 0.74906 1.06460 1.03329 1.86118 1.24708 1.24383 1.88217 1.18374 0.88905 0.86696 0.97472 1.21452 1.02008 0.88504 1.06782 1.18191 0.90627 0.92795 0.94070 1.18015 1.02845 0.93783 1.00878 1.21059 0.89808 0.97054 0.94819 1.21000 1.05904 0.94114 1.02785 1.17707 0.90223 0.83134 0.96451 1.91446 1.75529 1.49479 1.95956 1.21022 1.02075 1.01423 1.06058 1.19459 0.88231 0.92590 0.88878 1.83997 1.45081 1.38614 1.42183 1.21727 1.14426 0.94502 1.18757 0.88147 1.26408 0.94439 1.01298 0.98754 1.70167 1.17401 1.29133 1.36998 0.84770 0.78515 0.76282 0.77531 1.18252 1.19866 1.18357 1.20980 0.94578 0.96519 1.03817 1.17308 0.77228 0.92839 1.05080 1.91477 1.28921 1.97114 1.94028 1.16904 0.87829 0.80991 1.15933 1.91443 1.76925 1.48173 1.94856 0.91437 0.89896 0.85477 0.79954 0.80578 0.81627 0.85429 0.91782 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -8.25 10.35 -93.01 -0.96 -9.21 16 3 C 0.13 4.03 6.69 22.49 0.15 4.18 16 4 C -0.17 -4.67 8.50 22.59 0.19 -4.48 16 5 C 0.04 1.53 5.27 -20.06 -0.11 1.42 16 6 C -0.15 -5.38 5.49 -19.93 -0.11 -5.49 16 7 C -0.01 -0.25 9.51 22.46 0.21 -0.03 16 8 C -0.22 -5.61 10.01 22.31 0.22 -5.39 16 9 C 0.14 4.77 7.29 22.40 0.16 4.93 16 10 F -0.15 -4.67 17.26 44.97 0.78 -3.89 16 11 C -0.29 -11.51 9.14 22.41 0.20 -11.31 16 12 C 0.16 7.07 6.55 22.81 0.15 7.22 16 13 O -0.19 -10.43 8.10 -21.71 -0.18 -10.60 16 14 C -0.42 -22.59 9.49 67.92 0.64 -21.94 16 15 H 0.10 5.03 5.21 -2.91 -0.02 5.01 16 16 C -0.01 -0.46 5.49 84.83 0.47 0.00 16 17 N -0.90 -52.58 13.67 21.61 0.30 -52.28 16 18 Si 1.01 41.27 29.55 68.60 2.03 43.30 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.14 -5.71 8.75 22.55 0.20 -5.51 16 23 C 0.10 3.85 7.29 22.36 0.16 4.01 16 24 F -0.14 -5.83 17.17 44.97 0.77 -5.06 16 25 C 0.00 0.15 7.31 22.53 0.16 0.32 16 26 F -0.14 -5.06 17.01 44.97 0.77 -4.29 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 29 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.18 3.47 6.27 -2.91 -0.02 3.45 16 31 H 0.18 2.80 8.04 -2.90 -0.02 2.78 16 32 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.12 5.64 7.68 -2.91 -0.02 5.61 16 Total: -1.00 -68.08 323.70 8.50 -59.57 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.18 Total: 13.28 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.83 Total: -30.81 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.30 Total: -52.28 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.14 Total: -19.81 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 2.31 Total: -13.24 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -68.08 8.50 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240662017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.574 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds