Wall clock time and date at job start Tue Mar 31 2020 13:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35919 * 117.00504 * 2 1 4 4 C 1.38739 * 120.11291 * 270.02521 * 3 2 1 5 5 F 1.35102 * 119.95863 * 359.97438 * 4 3 2 6 6 C 1.38357 * 120.07938 * 179.97438 * 4 3 2 7 7 C 1.38392 * 120.31373 * 359.97374 * 6 4 3 8 8 C 1.38201 * 120.22143 * 359.76219 * 7 6 4 9 9 F 1.35103 * 120.03671 * 180.27645 * 8 7 6 10 10 C 1.39587 * 119.92059 * 0.51833 * 8 7 6 11 11 C 1.48216 * 120.15698 * 179.74008 * 10 8 7 12 12 C 1.39314 * 120.13737 * 269.72361 * 11 10 8 13 13 C 1.37979 * 119.96684 * 179.72166 * 12 11 10 14 14 C 1.38670 * 120.24880 * 0.02562 * 13 12 11 15 15 F 1.35099 * 119.86220 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.27151 * 359.97438 * 14 13 12 17 17 C 1.38699 * 120.03409 * 359.95672 * 16 14 13 18 18 O 1.35674 * 120.12347 * 180.02562 * 17 16 14 19 19 C 1.34816 * 116.99535 * 354.40852 * 18 17 16 20 20 H 1.07996 * 120.00603 * 5.06217 * 19 18 17 21 21 C 1.38644 * 119.99288 * 185.06238 * 19 18 17 22 22 N 1.31560 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99478 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46913 * 90.00427 * 23 21 19 25 25 H 1.48504 * 109.46817 * 209.99866 * 23 21 19 26 26 H 1.48496 * 109.47495 * 330.00176 * 23 21 19 27 27 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47298 * 300.00254 * 1 2 3 29 29 H 1.09007 * 109.47064 * 59.99782 * 1 2 3 30 30 H 1.08000 * 119.84989 * 179.97438 * 6 4 3 31 31 H 1.07988 * 119.89101 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.01611 * 359.74717 * 12 11 10 33 33 H 1.08009 * 119.87791 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.97999 * 180.02562 * 16 14 13 35 35 H 0.97000 * 119.99973 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 2.3617 1.8314 -1.2001 5 9 2.0556 1.2308 -2.3710 6 6 2.9895 3.0644 -1.1993 7 6 3.3058 3.6863 -0.0042 8 6 2.9924 3.0823 1.1986 9 9 3.2979 3.6954 2.3631 10 6 2.3643 1.8357 1.2090 11 6 2.0310 1.1806 2.4960 12 6 2.9474 0.3248 3.1032 13 6 2.6357 -0.2788 4.3042 14 6 1.4122 -0.0375 4.9105 15 9 1.1149 -0.6330 6.0861 16 6 0.4946 0.8105 4.3164 17 6 0.7966 1.4244 3.1099 18 8 -0.1017 2.2568 2.5259 19 6 -1.3134 2.3554 3.1086 20 1 -1.5058 1.8505 4.0437 21 6 -2.3127 3.1051 2.5072 22 7 -2.0786 3.7197 1.3678 23 14 -3.9920 3.2411 3.3141 24 1 -4.0083 4.4110 4.2287 25 1 -5.0311 3.4164 2.2678 26 1 -4.2714 2.0044 4.0871 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.2338 3.5438 -2.1357 31 1 3.7954 4.6488 -0.0116 32 1 3.9014 0.1342 2.6343 33 1 3.3471 -0.9423 4.7735 34 1 -0.4567 0.9954 4.7929 35 1 -2.7778 4.2439 0.9468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240723813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:18 Heat of formation + Delta-G solvation = -144.213827 kcal Electronic energy + Delta-G solvation = -27842.624429 eV Core-core repulsion = 23357.750926 eV Total energy + Delta-G solvation = -4484.873503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.65246 -48.51263 -48.38228 -39.82747 -38.64214 -36.86849 -36.40245 -32.52379 -31.92363 -29.58361 -29.47806 -28.18454 -26.40266 -25.57868 -23.36145 -22.20490 -21.97960 -21.01328 -18.39952 -18.05972 -17.63415 -17.26585 -17.02596 -16.03001 -15.72872 -15.49110 -15.32838 -15.09628 -15.01515 -14.95404 -14.58125 -14.34324 -14.23106 -14.11917 -13.61506 -13.46290 -13.32157 -12.89726 -12.57131 -12.32706 -12.16238 -11.81690 -11.49543 -11.32550 -11.30533 -10.86629 -10.81742 -10.80482 -10.57467 -9.79042 -9.63760 -9.02891 -8.61970 -8.22172 -8.20146 -7.52327 -6.65097 -4.25515 1.12841 1.18699 1.71349 2.05964 3.02245 3.03864 3.08300 3.34672 3.79915 4.03411 4.12247 4.39864 4.52119 4.74721 4.81392 4.87929 5.05986 5.07014 5.24029 5.44064 5.57947 5.64825 5.77722 5.89402 5.96286 6.01853 6.08471 6.23080 6.24514 6.32191 6.36573 6.61089 6.74092 6.80112 6.89726 6.91315 7.14351 7.51789 7.71266 7.77754 8.79261 9.41091 10.50626 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.006674 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.212180 B = 4194.330101 C = 5659.303813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.112 3.888 4 C 0.067 3.933 5 F -0.133 7.133 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.121 3.879 9 F -0.126 7.126 10 C -0.032 4.032 11 C -0.144 4.144 12 C -0.018 4.018 13 C -0.246 4.246 14 C 0.150 3.850 15 F -0.150 7.150 16 C -0.270 4.270 17 C 0.192 3.808 18 O -0.157 6.157 19 C -0.399 4.399 20 H 0.095 0.905 21 C 0.047 3.953 22 N -0.851 5.851 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -2.575 -2.730 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.241 6.241 3 C 0.067 3.933 4 C 0.047 3.953 5 F -0.112 7.112 6 C -0.137 4.137 7 C -0.154 4.154 8 C 0.101 3.899 9 F -0.105 7.105 10 C -0.033 4.033 11 C -0.146 4.146 12 C -0.037 4.037 13 C -0.266 4.266 14 C 0.131 3.869 15 F -0.128 7.128 16 C -0.290 4.290 17 C 0.136 3.864 18 O -0.059 6.059 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.159 4.159 22 N -0.484 5.484 23 Si 0.764 3.236 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.409 -2.464 -3.069 8.390 hybrid contribution -1.195 0.189 0.681 1.388 sum 6.215 -2.276 -2.389 7.036 Atomic orbital electron populations 1.23139 0.77247 1.02919 1.02701 1.85941 1.21015 1.23035 1.94141 1.18379 0.97826 0.87474 0.89650 1.17907 1.03516 0.93060 0.80834 1.91475 1.91357 1.83171 1.45185 1.20777 1.00151 0.93576 0.99225 1.20832 1.03130 1.01345 0.90083 1.17562 0.99381 0.91169 0.81740 1.91513 1.90600 1.81950 1.46419 1.18656 0.98980 0.92656 0.93052 1.17375 0.95073 1.06508 0.95643 1.20452 0.97250 0.92843 0.93105 1.20442 0.97375 1.09258 0.99479 1.17526 0.94238 0.93665 0.81517 1.91425 1.93758 1.82128 1.45512 1.20966 1.02585 1.05941 0.99515 1.18882 0.89339 0.88208 0.90018 1.83989 1.21702 1.51713 1.48448 1.21380 0.85493 1.33475 1.07109 0.88793 1.25286 0.99377 0.95471 0.95803 1.70030 1.34281 1.28544 1.15531 0.85725 0.79804 0.79366 0.78743 1.19664 1.20071 1.18985 0.89157 0.90886 0.93659 0.83682 0.83712 0.85740 0.85879 0.84001 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.13 101.05 1.12 1.75 16 2 O -0.32 -6.30 9.73 -19.49 -0.19 -6.49 16 3 C 0.11 2.14 5.73 -38.83 -0.22 1.92 16 4 C 0.07 1.14 7.30 -39.35 -0.29 0.85 16 5 F -0.13 -2.25 17.11 2.25 0.04 -2.21 16 6 C -0.12 -1.69 10.01 -39.48 -0.40 -2.08 16 7 C -0.14 -1.99 10.01 -39.54 -0.40 -2.38 16 8 C 0.12 2.20 7.27 -39.09 -0.28 1.91 16 9 F -0.13 -2.40 16.82 2.25 0.04 -2.36 16 10 C -0.03 -0.63 4.85 -104.73 -0.51 -1.13 16 11 C -0.14 -2.96 4.50 -104.73 -0.47 -3.43 16 12 C -0.02 -0.32 9.77 -39.28 -0.38 -0.71 16 13 C -0.25 -4.29 10.01 -39.52 -0.40 -4.69 16 14 C 0.15 2.89 7.29 -39.38 -0.29 2.61 16 15 F -0.15 -2.76 17.26 2.25 0.04 -2.73 16 16 C -0.27 -5.78 9.14 -39.37 -0.36 -6.14 16 17 C 0.19 4.37 5.93 -38.75 -0.23 4.14 16 18 O -0.16 -4.08 8.12 0.32 0.00 -4.07 16 19 C -0.40 -10.31 9.49 30.88 0.29 -10.02 16 20 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 21 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 22 N -0.85 -23.03 13.67 55.48 0.76 -22.27 16 23 Si 0.94 19.41 29.55 -169.99 -5.02 14.38 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.59 6.20 -51.93 -0.32 1.27 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 34 H 0.14 3.04 5.64 -52.49 -0.30 2.74 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -28.37 325.38 -4.89 -33.27 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.56 Total: 3.88 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.90 Total: -16.30 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.76 Total: -22.27 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.19 Total: -10.56 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.12 Total: -7.30 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.37 -4.89 -33.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240723813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.946 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds