Wall clock time and date at job start Tue Mar 31 2020 13:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35919 * 117.00504 * 2 1 4 4 C 1.38739 * 120.11291 * 270.02521 * 3 2 1 5 5 F 1.35102 * 119.95863 * 359.97438 * 4 3 2 6 6 C 1.38357 * 120.07938 * 179.97438 * 4 3 2 7 7 C 1.38392 * 120.31373 * 359.97374 * 6 4 3 8 8 C 1.38201 * 120.22143 * 359.76219 * 7 6 4 9 9 F 1.35103 * 120.03671 * 180.27645 * 8 7 6 10 10 C 1.39587 * 119.92059 * 0.51833 * 8 7 6 11 11 C 1.48216 * 120.15698 * 179.74008 * 10 8 7 12 12 C 1.39314 * 120.13737 * 269.72361 * 11 10 8 13 13 C 1.37979 * 119.96684 * 179.72166 * 12 11 10 14 14 C 1.38670 * 120.24880 * 0.02562 * 13 12 11 15 15 F 1.35099 * 119.86220 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.27151 * 359.97438 * 14 13 12 17 17 C 1.38699 * 120.03409 * 359.95672 * 16 14 13 18 18 O 1.35674 * 120.12347 * 180.02562 * 17 16 14 19 19 C 1.34816 * 116.99535 * 354.40852 * 18 17 16 20 20 H 1.07996 * 120.00603 * 5.06217 * 19 18 17 21 21 C 1.38644 * 119.99288 * 185.06238 * 19 18 17 22 22 N 1.31560 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99478 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46913 * 90.00427 * 23 21 19 25 25 H 1.48504 * 109.46817 * 209.99866 * 23 21 19 26 26 H 1.48496 * 109.47495 * 330.00176 * 23 21 19 27 27 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47298 * 300.00254 * 1 2 3 29 29 H 1.09007 * 109.47064 * 59.99782 * 1 2 3 30 30 H 1.08000 * 119.84989 * 179.97438 * 6 4 3 31 31 H 1.07988 * 119.89101 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.01611 * 359.74717 * 12 11 10 33 33 H 1.08009 * 119.87791 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.97999 * 180.02562 * 16 14 13 35 35 H 0.97000 * 119.99973 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 2.3617 1.8314 -1.2001 5 9 2.0556 1.2308 -2.3710 6 6 2.9895 3.0644 -1.1993 7 6 3.3058 3.6863 -0.0042 8 6 2.9924 3.0823 1.1986 9 9 3.2979 3.6954 2.3631 10 6 2.3643 1.8357 1.2090 11 6 2.0310 1.1806 2.4960 12 6 2.9474 0.3248 3.1032 13 6 2.6357 -0.2788 4.3042 14 6 1.4122 -0.0375 4.9105 15 9 1.1149 -0.6330 6.0861 16 6 0.4946 0.8105 4.3164 17 6 0.7966 1.4244 3.1099 18 8 -0.1017 2.2568 2.5259 19 6 -1.3134 2.3554 3.1086 20 1 -1.5058 1.8505 4.0437 21 6 -2.3127 3.1051 2.5072 22 7 -2.0786 3.7197 1.3678 23 14 -3.9920 3.2411 3.3141 24 1 -4.0083 4.4110 4.2287 25 1 -5.0311 3.4164 2.2678 26 1 -4.2714 2.0044 4.0871 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.2338 3.5438 -2.1357 31 1 3.7954 4.6488 -0.0116 32 1 3.9014 0.1342 2.6343 33 1 3.3471 -0.9423 4.7735 34 1 -0.4567 0.9954 4.7929 35 1 -2.7778 4.2439 0.9468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240723813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:17 Heat of formation + Delta-G solvation = -158.913862 kcal Electronic energy + Delta-G solvation = -27843.261870 eV Core-core repulsion = 23357.750926 eV Total energy + Delta-G solvation = -4485.510944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.97815 -49.93327 -49.91339 -41.34439 -40.19356 -38.30395 -37.97457 -34.36651 -33.37460 -31.10095 -30.89925 -29.66275 -27.87669 -27.42007 -24.77614 -23.65116 -23.52616 -22.50169 -20.14339 -19.53509 -19.19556 -18.64331 -18.43374 -17.49796 -17.15228 -17.10966 -16.89447 -16.64021 -16.47386 -16.39316 -16.00872 -15.97850 -15.71616 -15.43682 -15.29116 -15.12357 -14.84420 -14.15905 -14.14239 -13.71161 -13.68770 -13.44270 -12.97675 -12.95466 -12.68571 -12.43079 -12.32675 -12.22979 -12.16742 -11.57057 -11.15234 -10.85412 -9.95635 -9.78589 -9.56365 -9.17223 -8.52413 -6.20550 -0.19997 -0.13718 0.13194 0.48191 1.33753 1.40163 1.48543 2.02191 2.11163 2.54310 2.68970 2.98031 3.06070 3.15754 3.21919 3.37551 3.55020 3.81667 3.92546 4.00552 4.15211 4.20840 4.31857 4.40244 4.43913 4.64083 4.76560 4.83773 4.87280 4.92151 4.98467 5.01547 5.12924 5.20809 5.32539 5.44197 5.55947 5.91738 5.96382 6.27003 6.91297 7.61982 8.67301 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.006674 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.212180 B = 4194.330101 C = 5659.303813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.331 6.331 3 C 0.086 3.914 4 C 0.058 3.942 5 F -0.134 7.134 6 C -0.100 4.100 7 C -0.118 4.118 8 C 0.099 3.901 9 F -0.137 7.137 10 C -0.057 4.057 11 C -0.146 4.146 12 C -0.018 4.018 13 C -0.220 4.220 14 C 0.143 3.857 15 F -0.143 7.143 16 C -0.284 4.284 17 C 0.168 3.832 18 O -0.194 6.194 19 C -0.418 4.418 20 H 0.097 0.903 21 C -0.003 4.003 22 N -0.899 5.899 23 Si 1.006 2.994 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.257 1.257 27 H 0.118 0.882 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.190 0.810 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -2.923 -2.990 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.248 6.248 3 C 0.041 3.959 4 C 0.038 3.962 5 F -0.112 7.112 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.079 3.921 9 F -0.116 7.116 10 C -0.059 4.059 11 C -0.148 4.148 12 C -0.036 4.036 13 C -0.239 4.239 14 C 0.124 3.876 15 F -0.122 7.122 16 C -0.304 4.304 17 C 0.115 3.885 18 O -0.098 6.098 19 C -0.494 4.494 20 H 0.114 0.886 21 C -0.204 4.204 22 N -0.535 5.535 23 Si 0.826 3.174 24 H -0.191 1.191 25 H -0.194 1.194 26 H -0.181 1.181 27 H 0.136 0.864 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.202 0.798 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.149 0.851 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.147 -2.845 -3.303 10.132 hybrid contribution -1.462 0.169 0.793 1.672 sum 7.685 -2.676 -2.511 8.516 Atomic orbital electron populations 1.23081 0.77419 1.04122 1.00762 1.85920 1.20919 1.23755 1.94191 1.18601 0.98851 0.87956 0.90456 1.18136 1.03903 0.93965 0.80174 1.91472 1.91441 1.83376 1.44952 1.21268 0.97714 0.92010 1.00884 1.21286 1.01476 1.02258 0.88660 1.17908 1.00433 0.91129 0.82622 1.91480 1.90805 1.82025 1.47252 1.18765 1.00463 0.93786 0.92836 1.17778 0.94470 1.06370 0.96161 1.20918 0.98005 0.91584 0.93079 1.20912 0.96685 1.07761 0.98519 1.17601 0.94631 0.93539 0.81857 1.91439 1.93811 1.81870 1.45087 1.21023 1.02968 1.06866 0.99591 1.19305 0.89930 0.88627 0.90659 1.83978 1.22182 1.53952 1.49669 1.21716 0.86277 1.33937 1.07473 0.88579 1.26314 1.02828 0.94931 0.96296 1.70145 1.35570 1.30423 1.17397 0.84759 0.75114 0.79606 0.77933 1.19081 1.19369 1.18080 0.86352 0.94485 0.93896 0.79293 0.79801 0.82367 0.81917 0.85062 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 11.13 113.37 1.26 2.80 16 2 O -0.33 -12.97 9.73 -92.64 -0.90 -13.87 16 3 C 0.09 3.30 5.73 22.76 0.13 3.43 16 4 C 0.06 1.91 7.30 22.42 0.16 2.07 16 5 F -0.13 -4.35 17.11 44.97 0.77 -3.58 16 6 C -0.10 -2.56 10.01 22.33 0.22 -2.34 16 7 C -0.12 -3.17 10.01 22.30 0.22 -2.95 16 8 C 0.10 3.50 7.27 22.59 0.16 3.67 16 9 F -0.14 -5.16 16.82 44.97 0.76 -4.41 16 10 C -0.06 -2.24 4.85 -19.93 -0.10 -2.34 16 11 C -0.15 -6.03 4.50 -19.94 -0.09 -6.12 16 12 C -0.02 -0.60 9.77 22.47 0.22 -0.39 16 13 C -0.22 -7.06 10.01 22.31 0.22 -6.84 16 14 C 0.14 5.38 7.29 22.40 0.16 5.55 16 15 F -0.14 -5.10 17.26 44.97 0.78 -4.32 16 16 C -0.28 -12.51 9.14 22.41 0.20 -12.30 16 17 C 0.17 7.95 5.93 22.81 0.14 8.08 16 18 O -0.19 -10.63 8.12 -21.76 -0.18 -10.80 16 19 C -0.42 -22.78 9.49 67.92 0.64 -22.14 16 20 H 0.10 4.95 5.21 -2.91 -0.02 4.93 16 21 C 0.00 -0.17 5.49 84.83 0.47 0.30 16 22 N -0.90 -50.91 13.67 21.61 0.30 -50.61 16 23 Si 1.01 40.90 29.55 68.60 2.03 42.92 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 27 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.04 1.70 6.20 -2.39 -0.01 1.69 16 29 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.18 3.43 8.06 -2.92 -0.02 3.40 16 32 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.13 5.92 5.64 -2.91 -0.02 5.90 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -65.58 325.38 8.76 -56.82 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 1.17 Total: 17.35 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.04 Total: -29.50 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.30 Total: -50.61 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.08 Total: -24.68 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 2.30 Total: -12.31 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.58 8.76 -56.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240723813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.089 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds