Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35932 * 116.99903 * 2 1 4 4 C 1.38742 * 119.92384 * 0.02562 * 3 2 1 5 5 C 1.38135 * 120.07180 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.04212 * 180.02562 * 5 4 3 7 7 C 1.39637 * 119.92267 * 359.97438 * 5 4 3 8 8 C 1.48240 * 120.07945 * 179.97438 * 7 5 4 9 9 C 1.39317 * 120.13606 * 245.20842 * 8 7 5 10 10 C 1.37978 * 119.96446 * 180.27380 * 9 8 7 11 11 C 1.38669 * 120.24604 * 359.75304 * 10 9 8 12 12 F 1.35100 * 119.85827 * 179.97438 * 11 10 9 13 13 C 1.38334 * 120.27516 * 0.02562 * 11 10 9 14 14 C 1.38693 * 120.03119 * 359.97438 * 13 11 10 15 15 O 1.35675 * 120.12047 * 179.97438 * 14 13 11 16 16 C 1.34813 * 117.00428 * 5.59652 * 15 14 13 17 17 H 1.08000 * 119.99419 * 354.93541 * 16 15 14 18 18 C 1.38635 * 120.00095 * 174.65644 * 16 15 14 19 19 N 1.31565 * 119.99813 * 0.28291 * 18 16 15 20 20 Si 1.86800 * 119.99649 * 180.27524 * 18 16 15 21 21 H 1.48498 * 109.46960 * 60.00605 * 20 18 16 22 22 H 1.48504 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47276 * 300.00213 * 20 18 16 24 24 C 1.39418 * 119.83920 * 0.25497 * 7 5 4 25 25 C 1.38077 * 119.93245 * 359.48991 * 24 7 5 26 26 F 1.35097 * 119.96343 * 180.25516 * 25 24 7 27 27 H 1.08992 * 109.47475 * 59.99861 * 1 2 3 28 28 H 1.09008 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47424 * 299.99549 * 1 2 3 30 30 H 1.08003 * 119.96251 * 359.95441 * 4 3 2 31 31 H 1.08002 * 120.01811 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.87546 * 179.72109 * 10 9 8 33 33 H 1.08005 * 119.98422 * 180.02562 * 13 11 10 34 34 H 0.96999 * 119.99694 * 180.02562 * 19 18 16 35 35 H 1.08005 * 120.03380 * 179.72860 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2889 2.3737 0.0005 5 6 1.9128 3.6062 0.0011 6 9 1.1749 4.7378 0.0021 7 6 3.3072 3.6810 0.0016 8 6 3.9804 5.0017 0.0016 9 6 4.7486 5.3952 -1.0920 10 6 5.3782 6.6230 -1.0858 11 6 5.2455 7.4706 0.0036 12 9 5.8659 8.6707 0.0015 13 6 4.4814 7.0919 1.0929 14 6 3.8435 5.8604 1.0988 15 8 3.0941 5.4870 2.1664 16 6 2.9142 6.4034 3.1386 17 1 3.4243 7.3539 3.0857 18 6 2.0699 6.1281 4.2031 19 7 1.4486 4.9701 4.2675 20 14 1.8146 7.4011 5.5462 21 1 1.2514 8.6404 4.9529 22 1 0.8733 6.8662 6.5627 23 1 3.1166 7.7083 6.1909 24 6 4.0647 2.5106 -0.0038 25 6 3.4345 1.2820 0.0010 26 9 4.1680 0.1475 0.0010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2105 2.3151 0.0002 31 1 4.8544 4.7380 -1.9424 32 1 5.9770 6.9247 -1.9324 33 1 4.3810 7.7559 1.9387 34 1 0.8576 4.7776 5.0121 35 1 5.1434 2.5648 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240959494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = -145.392579 kcal Electronic energy + Delta-G solvation = -27046.603876 eV Core-core repulsion = 22561.679259 eV Total energy + Delta-G solvation = -4484.924617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.54895 -48.37657 -48.34706 -39.85649 -39.16611 -37.20178 -36.21688 -32.47403 -31.59718 -30.10421 -29.46227 -28.37746 -26.83194 -25.53847 -23.06605 -22.56249 -21.86780 -20.89324 -18.40356 -18.37296 -17.66305 -17.26988 -16.92212 -16.13231 -15.89401 -15.54493 -15.30360 -15.08392 -14.92892 -14.85764 -14.76870 -14.33934 -14.29910 -14.15285 -13.66466 -13.57542 -13.35908 -13.07927 -12.52999 -12.17679 -12.00935 -11.95464 -11.68278 -11.54737 -11.29134 -10.96464 -10.93855 -10.78771 -10.63969 -10.51197 -9.71128 -8.99086 -8.70972 -8.28577 -7.85103 -7.37927 -6.60986 -4.20044 1.21892 1.26206 1.82316 2.07164 3.05994 3.07139 3.09609 3.14630 3.61053 3.83748 4.17004 4.38193 4.54720 4.76402 4.81576 4.91647 4.95527 5.06545 5.10419 5.15007 5.30761 5.43442 5.48516 5.62311 5.65822 5.92531 5.97125 6.00655 6.32345 6.36326 6.41327 6.62577 6.75293 6.76068 6.90972 6.94086 7.17384 7.33204 7.53502 7.81060 8.82956 9.45495 10.54758 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.005491 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.855481 B = 5098.341039 C = 7120.859565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.117 3.883 4 C -0.219 4.219 5 C 0.166 3.834 6 F -0.118 7.118 7 C -0.049 4.049 8 C -0.150 4.150 9 C -0.026 4.026 10 C -0.251 4.251 11 C 0.150 3.850 12 F -0.150 7.150 13 C -0.271 4.271 14 C 0.192 3.808 15 O -0.151 6.151 16 C -0.397 4.397 17 H 0.095 0.905 18 C 0.046 3.954 19 N -0.849 5.849 20 Si 0.941 3.059 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.079 4.079 25 C 0.053 3.947 26 F -0.134 7.134 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.147 0.853 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.273 0.727 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 -5.187 -8.586 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.070 3.930 4 C -0.239 4.239 5 C 0.146 3.854 6 F -0.096 7.096 7 C -0.050 4.050 8 C -0.151 4.151 9 C -0.044 4.044 10 C -0.271 4.271 11 C 0.131 3.869 12 F -0.129 7.129 13 C -0.291 4.291 14 C 0.135 3.865 15 O -0.051 6.051 16 C -0.472 4.472 17 H 0.112 0.888 18 C -0.160 4.160 19 N -0.482 5.482 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.098 4.098 25 C 0.033 3.967 26 F -0.113 7.113 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.329 -5.687 -8.327 10.089 hybrid contribution -0.326 1.115 0.845 1.437 sum -0.655 -4.572 -7.482 8.792 Atomic orbital electron populations 1.23131 0.78005 1.04035 1.01889 1.86110 1.21728 1.25539 1.88741 1.18578 0.90436 0.84868 0.99072 1.20864 1.01058 0.90335 1.11622 1.17376 0.88402 0.81780 0.97865 1.91551 1.76331 1.48856 1.92853 1.18216 0.90496 0.93029 1.03299 1.17491 1.08075 0.94253 0.95320 1.20511 0.93352 0.94762 0.95765 1.20436 1.10228 0.96710 0.99676 1.17537 0.93520 0.80624 0.95248 1.91424 1.80829 1.43720 1.96895 1.20974 1.06811 1.00317 1.00962 1.18928 0.89822 0.90487 0.87267 1.83981 1.57854 1.39088 1.24194 1.21350 1.28614 0.97418 0.99846 0.88814 1.25309 0.94998 0.97607 0.98099 1.70033 1.26043 1.21187 1.30888 0.85768 0.78893 0.79484 0.79318 1.19282 1.20113 1.19280 1.20883 1.00904 0.88613 0.99426 1.16683 0.85719 0.82768 1.11547 1.91470 1.76595 1.48637 1.94620 0.92428 0.88074 0.92047 0.83570 0.85587 0.85967 0.84058 0.91697 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.54 10.35 -19.53 -0.20 -4.74 16 3 C 0.12 1.91 6.69 -39.11 -0.26 1.65 16 4 C -0.22 -3.65 9.00 -39.43 -0.35 -4.00 16 5 C 0.17 3.21 6.95 -39.10 -0.27 2.94 16 6 F -0.12 -2.53 16.66 2.25 0.04 -2.49 16 7 C -0.05 -0.93 4.95 -104.82 -0.52 -1.45 16 8 C -0.15 -2.98 5.02 -104.73 -0.53 -3.50 16 9 C -0.03 -0.43 9.73 -39.28 -0.38 -0.81 16 10 C -0.25 -4.22 10.01 -39.52 -0.40 -4.61 16 11 C 0.15 2.86 7.29 -39.39 -0.29 2.57 16 12 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 13 C -0.27 -5.80 9.14 -39.38 -0.36 -6.16 16 14 C 0.19 4.42 6.45 -38.76 -0.25 4.17 16 15 O -0.15 -4.02 8.96 0.33 0.00 -4.02 16 16 C -0.40 -10.57 9.49 30.88 0.29 -10.28 16 17 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 18 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 19 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 20 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.08 -1.33 9.70 -39.20 -0.38 -1.71 16 25 C 0.05 0.89 7.30 -39.35 -0.29 0.60 16 26 F -0.13 -2.23 17.10 2.25 0.04 -2.19 16 27 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 28 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 30 H 0.15 2.06 6.28 -52.48 -0.33 1.73 16 31 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.14 3.05 5.64 -52.48 -0.30 2.75 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -29.79 324.94 -5.06 -34.85 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.52 Total: 2.74 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.09 Total: -18.23 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.76 Total: -22.87 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.20 Total: -8.76 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.40 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.79 -5.06 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.541 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds