Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35932 * 116.99903 * 2 1 4 4 C 1.38742 * 119.92384 * 0.02562 * 3 2 1 5 5 C 1.38135 * 120.07180 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.04212 * 180.02562 * 5 4 3 7 7 C 1.39637 * 119.92267 * 359.97438 * 5 4 3 8 8 C 1.48240 * 120.07945 * 179.97438 * 7 5 4 9 9 C 1.39317 * 120.13606 * 245.20842 * 8 7 5 10 10 C 1.37978 * 119.96446 * 180.27380 * 9 8 7 11 11 C 1.38669 * 120.24604 * 359.75304 * 10 9 8 12 12 F 1.35100 * 119.85827 * 179.97438 * 11 10 9 13 13 C 1.38334 * 120.27516 * 0.02562 * 11 10 9 14 14 C 1.38693 * 120.03119 * 359.97438 * 13 11 10 15 15 O 1.35675 * 120.12047 * 179.97438 * 14 13 11 16 16 C 1.34813 * 117.00428 * 5.59652 * 15 14 13 17 17 H 1.08000 * 119.99419 * 354.93541 * 16 15 14 18 18 C 1.38635 * 120.00095 * 174.65644 * 16 15 14 19 19 N 1.31565 * 119.99813 * 0.28291 * 18 16 15 20 20 Si 1.86800 * 119.99649 * 180.27524 * 18 16 15 21 21 H 1.48498 * 109.46960 * 60.00605 * 20 18 16 22 22 H 1.48504 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47276 * 300.00213 * 20 18 16 24 24 C 1.39418 * 119.83920 * 0.25497 * 7 5 4 25 25 C 1.38077 * 119.93245 * 359.48991 * 24 7 5 26 26 F 1.35097 * 119.96343 * 180.25516 * 25 24 7 27 27 H 1.08992 * 109.47475 * 59.99861 * 1 2 3 28 28 H 1.09008 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47424 * 299.99549 * 1 2 3 30 30 H 1.08003 * 119.96251 * 359.95441 * 4 3 2 31 31 H 1.08002 * 120.01811 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.87546 * 179.72109 * 10 9 8 33 33 H 1.08005 * 119.98422 * 180.02562 * 13 11 10 34 34 H 0.96999 * 119.99694 * 180.02562 * 19 18 16 35 35 H 1.08005 * 120.03380 * 179.72860 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2889 2.3737 0.0005 5 6 1.9128 3.6062 0.0011 6 9 1.1749 4.7378 0.0021 7 6 3.3072 3.6810 0.0016 8 6 3.9804 5.0017 0.0016 9 6 4.7486 5.3952 -1.0920 10 6 5.3782 6.6230 -1.0858 11 6 5.2455 7.4706 0.0036 12 9 5.8659 8.6707 0.0015 13 6 4.4814 7.0919 1.0929 14 6 3.8435 5.8604 1.0988 15 8 3.0941 5.4870 2.1664 16 6 2.9142 6.4034 3.1386 17 1 3.4243 7.3539 3.0857 18 6 2.0699 6.1281 4.2031 19 7 1.4486 4.9701 4.2675 20 14 1.8146 7.4011 5.5462 21 1 1.2514 8.6404 4.9529 22 1 0.8733 6.8662 6.5627 23 1 3.1166 7.7083 6.1909 24 6 4.0647 2.5106 -0.0038 25 6 3.4345 1.2820 0.0010 26 9 4.1680 0.1475 0.0010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2105 2.3151 0.0002 31 1 4.8544 4.7380 -1.9424 32 1 5.9770 6.9247 -1.9324 33 1 4.3810 7.7559 1.9387 34 1 0.8576 4.7776 5.0121 35 1 5.1434 2.5648 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240959494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = -161.618336 kcal Electronic energy + Delta-G solvation = -27047.307478 eV Core-core repulsion = 22561.679259 eV Total energy + Delta-G solvation = -4485.628219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.90272 -49.88168 -49.86823 -41.20582 -40.66699 -38.63397 -37.72614 -34.34744 -33.02593 -31.43629 -31.02524 -29.65623 -28.00969 -27.37988 -24.43949 -23.96555 -23.42698 -22.35672 -20.11854 -19.69429 -19.27519 -18.59686 -18.35650 -17.42067 -17.29669 -17.09775 -16.93095 -16.60514 -16.32882 -16.19185 -16.08190 -15.98534 -15.66818 -15.40984 -15.33979 -15.15949 -14.90499 -14.45091 -14.10675 -13.63055 -13.48478 -13.25819 -13.06948 -12.90937 -12.57907 -12.46133 -12.40837 -12.25465 -12.18874 -11.85748 -11.52295 -10.83612 -10.05068 -9.78432 -9.32992 -8.92106 -8.51000 -6.18845 -0.18833 -0.08515 0.31642 0.53188 1.33552 1.42770 1.47930 2.04453 2.12970 2.25016 2.61102 3.00975 3.08595 3.18142 3.22439 3.40395 3.54609 3.63053 3.92496 4.02307 4.20474 4.29671 4.35083 4.36359 4.39990 4.56483 4.67801 4.71619 4.87535 4.97508 4.99489 5.08388 5.17612 5.25141 5.33326 5.49569 5.54565 5.93206 6.01262 6.12862 6.92401 7.65224 8.69055 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.005491 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.855481 B = 5098.341039 C = 7120.859565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.216 4.216 5 C 0.138 3.862 6 F -0.139 7.139 7 C -0.070 4.070 8 C -0.149 4.149 9 C -0.015 4.015 10 C -0.220 4.220 11 C 0.142 3.858 12 F -0.145 7.145 13 C -0.287 4.287 14 C 0.163 3.837 15 O -0.195 6.195 16 C -0.420 4.420 17 H 0.098 0.902 18 C -0.008 4.008 19 N -0.902 5.902 20 Si 1.010 2.990 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.070 4.070 25 C 0.047 3.953 26 F -0.132 7.132 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.128 0.872 34 H 0.274 0.726 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -5.575 -10.536 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.076 3.924 4 C -0.236 4.236 5 C 0.118 3.882 6 F -0.117 7.117 7 C -0.071 4.071 8 C -0.151 4.151 9 C -0.033 4.033 10 C -0.239 4.239 11 C 0.123 3.877 12 F -0.124 7.124 13 C -0.307 4.307 14 C 0.109 3.891 15 O -0.099 6.099 16 C -0.496 4.496 17 H 0.115 0.885 18 C -0.208 4.208 19 N -0.538 5.538 20 Si 0.829 3.171 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.089 4.089 25 C 0.027 3.973 26 F -0.111 7.111 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.077 0.923 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.183 0.817 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.691 -6.065 -10.325 11.994 hybrid contribution -0.502 1.150 1.132 1.690 sum 0.189 -4.915 -9.192 10.425 Atomic orbital electron populations 1.23509 0.75596 1.06385 1.02609 1.86117 1.24194 1.24534 1.88221 1.18656 0.90543 0.85377 0.97804 1.21022 1.02220 0.89471 1.10869 1.17754 0.88913 0.82008 0.99500 1.91490 1.76852 1.50108 1.93300 1.18300 0.90538 0.93381 1.04881 1.17896 1.07834 0.94279 0.95085 1.21040 0.91369 0.95185 0.95695 1.20971 1.08156 0.95456 0.99345 1.17655 0.93449 0.81296 0.95327 1.91438 1.80581 1.43479 1.96862 1.21016 1.07852 1.00036 1.01803 1.19478 0.89957 0.91837 0.87779 1.83967 1.60514 1.39809 1.25599 1.21726 1.29254 0.97947 1.00625 0.88461 1.26409 0.94508 0.99667 1.00258 1.70159 1.27977 1.23472 1.32173 0.84774 0.79152 0.76873 0.76285 1.18511 1.19400 1.18302 1.21022 1.01856 0.87784 0.98229 1.16803 0.86095 0.82872 1.11550 1.91474 1.76558 1.48484 1.94601 0.90719 0.85019 0.92286 0.81552 0.81106 0.81733 0.85421 0.91732 0.80973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -8.81 10.35 -92.79 -0.96 -9.77 16 3 C 0.12 3.90 6.69 22.58 0.15 4.05 16 4 C -0.22 -7.14 9.00 22.37 0.20 -6.94 16 5 C 0.14 5.43 6.95 22.58 0.16 5.59 16 6 F -0.14 -6.22 16.66 44.97 0.75 -5.47 16 7 C -0.07 -2.62 4.95 -20.00 -0.10 -2.72 16 8 C -0.15 -5.83 5.02 -19.93 -0.10 -5.93 16 9 C -0.02 -0.45 9.73 22.47 0.22 -0.23 16 10 C -0.22 -6.51 10.01 22.31 0.22 -6.28 16 11 C 0.14 5.17 7.29 22.40 0.16 5.33 16 12 F -0.14 -5.04 17.26 44.97 0.78 -4.26 16 13 C -0.29 -12.53 9.14 22.40 0.20 -12.32 16 14 C 0.16 7.70 6.45 22.81 0.15 7.85 16 15 O -0.19 -11.00 8.96 -21.73 -0.19 -11.19 16 16 C -0.42 -23.61 9.49 67.91 0.64 -22.96 16 17 H 0.10 5.12 5.21 -2.91 -0.02 5.10 16 18 C -0.01 -0.46 5.49 84.83 0.47 0.01 16 19 N -0.90 -52.85 13.67 21.61 0.30 -52.56 16 20 Si 1.01 41.98 29.55 68.60 2.03 44.00 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 C -0.07 -2.25 9.70 22.52 0.22 -2.04 16 25 C 0.05 1.51 7.30 22.42 0.16 1.67 16 26 F -0.13 -4.17 17.10 44.97 0.77 -3.40 16 27 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 28 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 30 H 0.17 4.61 6.28 -2.91 -0.02 4.59 16 31 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.13 5.79 5.64 -2.91 -0.02 5.78 16 34 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.17 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -68.90 324.94 8.51 -60.39 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.17 Total: 15.85 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.87 Total: -33.59 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.30 Total: -52.56 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.16 Total: -20.97 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 2.29 Total: -13.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -68.90 8.51 -60.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.227 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds