Wall clock time and date at job start Tue Mar 31 2020 14:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35936 * 116.99961 * 2 1 4 4 C 1.38811 * 119.92390 * 359.97438 * 3 2 1 5 5 C 1.37930 * 120.14114 * 179.72421 * 4 3 2 6 6 C 1.39424 * 119.97949 * 0.55402 * 5 4 3 7 7 C 1.48250 * 120.07329 * 179.74823 * 6 5 4 8 8 C 1.39317 * 120.13876 * 64.95150 * 7 6 5 9 9 C 1.37978 * 119.96461 * 180.30060 * 8 7 6 10 10 C 1.38663 * 120.24745 * 359.72001 * 9 8 7 11 11 F 1.35101 * 119.86391 * 180.02562 * 10 9 8 12 12 C 1.38338 * 120.27509 * 0.02626 * 10 9 8 13 13 C 1.38693 * 120.03019 * 359.97438 * 12 10 9 14 14 O 1.35675 * 120.12047 * 180.02562 * 13 12 10 15 15 C 1.34813 * 117.00428 * 5.59652 * 14 13 12 16 16 H 1.08001 * 119.99441 * 354.95991 * 15 14 13 17 17 C 1.38634 * 120.00065 * 174.68030 * 15 14 13 18 18 N 1.31564 * 119.99584 * 180.27764 * 17 15 14 19 19 Si 1.86797 * 119.99932 * 0.27867 * 17 15 14 20 20 H 1.48491 * 109.47318 * 90.00046 * 19 17 15 21 21 H 1.48504 * 109.46594 * 209.99961 * 19 17 15 22 22 H 1.48492 * 109.47168 * 329.99568 * 19 17 15 23 23 C 1.39609 * 119.85201 * 359.46578 * 6 5 4 24 24 F 1.35098 * 120.07274 * 180.27697 * 23 6 5 25 25 C 1.38302 * 119.85922 * 0.25936 * 23 6 5 26 26 F 1.35099 * 119.99675 * 180.02562 * 25 23 6 27 27 H 1.08996 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46708 * 299.99816 * 1 2 3 29 29 H 1.08996 * 109.46848 * 59.99873 * 1 2 3 30 30 H 1.08001 * 119.92562 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.00981 * 180.29890 * 5 4 3 32 32 H 1.08007 * 120.01288 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.87404 * 179.70385 * 9 8 7 34 34 H 1.08007 * 119.98620 * 179.97438 * 12 10 9 35 35 H 0.97007 * 120.00000 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2886 2.3744 -0.0005 5 6 1.9101 3.6057 0.0052 6 6 3.3021 3.6835 -0.0001 7 6 3.9723 5.0059 0.0004 8 6 3.8378 5.8578 1.0945 9 6 4.4580 7.0903 1.0885 10 6 5.2206 7.4833 -0.0008 11 9 5.8249 8.6916 0.0017 12 6 5.3652 6.6432 -1.0904 13 6 4.7469 5.4018 -1.0965 14 8 4.8879 4.5762 -2.1639 15 6 5.7348 4.9711 -3.1356 16 1 6.2019 5.9435 -3.0823 17 6 6.0106 4.1269 -4.2001 18 7 6.8414 4.5103 -5.1455 19 14 5.2028 2.4452 -4.2920 20 1 3.9196 2.5522 -5.0317 21 1 6.1046 1.5009 -4.9993 22 1 4.9420 1.9455 -2.9182 23 6 4.0636 2.5133 0.0000 24 9 5.4127 2.5835 0.0005 25 6 3.4338 1.2820 0.0000 26 9 4.1679 0.1479 0.0007 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 0.2102 2.3150 -0.0005 31 1 1.3186 4.5092 0.0096 32 1 3.2447 5.5554 1.9450 33 1 4.3488 7.7516 1.9355 34 1 5.9600 6.9542 -1.9366 35 1 7.0341 3.9197 -5.8905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241041900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:03 Heat of formation + Delta-G solvation = -141.269471 kcal Electronic energy + Delta-G solvation = -27314.672045 eV Core-core repulsion = 22829.926219 eV Total energy + Delta-G solvation = -4484.745826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.07943 -48.42224 -48.14188 -40.11142 -39.34183 -37.40767 -36.39633 -32.56731 -31.67602 -30.42620 -29.67546 -28.44551 -27.12643 -25.45897 -23.30213 -22.62920 -21.78777 -21.09575 -18.60361 -18.25054 -17.90239 -17.40264 -17.09459 -16.42794 -16.03074 -15.70601 -15.46811 -15.34866 -15.26418 -15.13340 -14.70456 -14.50339 -14.13615 -14.07184 -13.81567 -13.69436 -13.34199 -13.03518 -12.58557 -12.45750 -12.37283 -12.23076 -11.91412 -11.47417 -11.29786 -11.15820 -11.07714 -10.83425 -10.76548 -10.34676 -9.67982 -9.01943 -8.64813 -8.48886 -8.08285 -7.55679 -6.56825 -4.24011 1.02136 1.05102 1.69950 1.94915 2.88863 3.16202 3.19327 3.35603 3.42521 3.99079 4.13195 4.13813 4.49285 4.58094 4.67939 4.68959 4.85180 4.90785 4.93810 4.97170 5.06705 5.21622 5.32282 5.36328 5.57866 5.71667 5.89260 5.97523 6.02549 6.17051 6.27061 6.51094 6.60053 6.71395 6.77499 6.88065 7.14407 7.36031 7.59019 7.83952 8.76682 9.32608 10.49391 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.006137 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.579856 B = 4561.683120 C = 6435.714449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.113 3.887 4 C -0.196 4.196 5 C -0.051 4.051 6 C -0.053 4.053 7 C -0.150 4.150 8 C -0.026 4.026 9 C -0.243 4.243 10 C 0.151 3.849 11 F -0.147 7.147 12 C -0.258 4.258 13 C 0.201 3.799 14 O -0.192 6.192 15 C -0.393 4.393 16 H 0.110 0.890 17 C 0.073 3.927 18 N -0.866 5.866 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.255 1.255 23 C 0.131 3.869 24 F -0.109 7.109 25 C 0.030 3.970 26 F -0.125 7.125 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -3.776 11.436 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.067 3.933 4 C -0.215 4.215 5 C -0.069 4.069 6 C -0.054 4.054 7 C -0.152 4.152 8 C -0.044 4.044 9 C -0.263 4.263 10 C 0.131 3.869 11 F -0.126 7.126 12 C -0.278 4.278 13 C 0.146 3.854 14 O -0.094 6.094 15 C -0.467 4.467 16 H 0.128 0.872 17 C -0.133 4.133 18 N -0.502 5.502 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.179 1.179 23 C 0.110 3.890 24 F -0.087 7.087 25 C 0.009 3.991 26 F -0.103 7.103 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.887 -4.267 11.119 17.548 hybrid contribution 0.198 -0.453 -0.393 0.632 sum -12.689 -4.721 10.726 17.272 Atomic orbital electron populations 1.23133 0.77821 1.04206 1.01682 1.86115 1.21760 1.25623 1.88649 1.18643 0.89752 0.85796 0.99117 1.21038 1.00325 0.91049 1.09046 1.20976 0.92453 0.97593 0.95913 1.18381 0.92720 0.90967 1.03317 1.17495 1.07624 0.94686 0.95368 1.20487 0.96536 0.91755 0.95632 1.20500 1.06815 0.99383 0.99599 1.17544 0.93768 0.80427 0.95139 1.91442 1.81569 1.42698 1.96855 1.21101 1.09934 0.95750 1.01059 1.18662 0.91656 0.88691 0.86441 1.83586 1.56881 1.43286 1.25666 1.20807 1.22364 1.04433 0.99131 0.87233 1.24438 0.95385 0.99229 0.94224 1.69638 1.32112 1.37923 1.10521 0.86303 0.79382 0.82267 0.79975 1.19607 1.20358 1.17892 1.17452 0.78244 0.91625 1.01668 1.91578 1.27231 1.96824 1.93038 1.16697 0.86771 0.81883 1.13774 1.91498 1.76497 1.47794 1.94550 0.88011 0.92298 0.92219 0.83936 0.83831 0.85420 0.85742 0.83407 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.14 10.35 -19.54 -0.20 -4.34 16 3 C 0.11 1.69 6.69 -39.11 -0.26 1.43 16 4 C -0.20 -2.39 9.02 -39.48 -0.36 -2.74 16 5 C -0.05 -0.69 9.73 -39.25 -0.38 -1.07 16 6 C -0.05 -0.92 4.95 -104.83 -0.52 -1.43 16 7 C -0.15 -2.78 5.02 -104.72 -0.53 -3.31 16 8 C -0.03 -0.40 9.73 -39.28 -0.38 -0.78 16 9 C -0.24 -3.86 10.01 -39.52 -0.40 -4.26 16 10 C 0.15 2.80 7.29 -39.39 -0.29 2.51 16 11 F -0.15 -2.68 17.26 2.25 0.04 -2.64 16 12 C -0.26 -5.48 9.14 -39.38 -0.36 -5.84 16 13 C 0.20 4.43 6.45 -38.75 -0.25 4.18 16 14 O -0.19 -4.85 7.78 0.33 0.00 -4.84 16 15 C -0.39 -10.73 9.94 30.88 0.31 -10.42 16 16 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 17 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 18 N -0.87 -24.54 13.96 55.48 0.77 -23.76 16 19 Si 0.90 21.78 28.62 -169.99 -4.86 16.92 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.13 2.53 6.96 -39.05 -0.27 2.26 16 24 F -0.11 -2.37 16.57 2.25 0.04 -2.34 16 25 C 0.03 0.54 7.31 -39.30 -0.29 0.25 16 26 F -0.12 -2.40 17.02 2.25 0.04 -2.36 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 30 H 0.14 1.19 6.28 -52.49 -0.33 0.86 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.15 3.32 5.64 -52.48 -0.30 3.03 16 35 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -30.53 323.70 -4.90 -35.43 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -2.53 Total: -0.83 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.08 Total: -16.12 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.77 Total: -23.76 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.20 Total: -9.19 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.53 -4.90 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241041900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.838 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds