Wall clock time and date at job start Tue Mar 31 2020 14:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35936 * 116.99961 * 2 1 4 4 C 1.38811 * 119.92390 * 359.97438 * 3 2 1 5 5 C 1.37930 * 120.14114 * 179.72421 * 4 3 2 6 6 C 1.39424 * 119.97949 * 0.55402 * 5 4 3 7 7 C 1.48250 * 120.07329 * 179.74823 * 6 5 4 8 8 C 1.39317 * 120.13876 * 64.95150 * 7 6 5 9 9 C 1.37978 * 119.96461 * 180.30060 * 8 7 6 10 10 C 1.38663 * 120.24745 * 359.72001 * 9 8 7 11 11 F 1.35101 * 119.86391 * 180.02562 * 10 9 8 12 12 C 1.38338 * 120.27509 * 0.02626 * 10 9 8 13 13 C 1.38693 * 120.03019 * 359.97438 * 12 10 9 14 14 O 1.35675 * 120.12047 * 180.02562 * 13 12 10 15 15 C 1.34813 * 117.00428 * 5.59652 * 14 13 12 16 16 H 1.08001 * 119.99441 * 354.95991 * 15 14 13 17 17 C 1.38634 * 120.00065 * 174.68030 * 15 14 13 18 18 N 1.31564 * 119.99584 * 180.27764 * 17 15 14 19 19 Si 1.86797 * 119.99932 * 0.27867 * 17 15 14 20 20 H 1.48491 * 109.47318 * 90.00046 * 19 17 15 21 21 H 1.48504 * 109.46594 * 209.99961 * 19 17 15 22 22 H 1.48492 * 109.47168 * 329.99568 * 19 17 15 23 23 C 1.39609 * 119.85201 * 359.46578 * 6 5 4 24 24 F 1.35098 * 120.07274 * 180.27697 * 23 6 5 25 25 C 1.38302 * 119.85922 * 0.25936 * 23 6 5 26 26 F 1.35099 * 119.99675 * 180.02562 * 25 23 6 27 27 H 1.08996 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46708 * 299.99816 * 1 2 3 29 29 H 1.08996 * 109.46848 * 59.99873 * 1 2 3 30 30 H 1.08001 * 119.92562 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.00981 * 180.29890 * 5 4 3 32 32 H 1.08007 * 120.01288 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.87404 * 179.70385 * 9 8 7 34 34 H 1.08007 * 119.98620 * 179.97438 * 12 10 9 35 35 H 0.97007 * 120.00000 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2886 2.3744 -0.0005 5 6 1.9101 3.6057 0.0052 6 6 3.3021 3.6835 -0.0001 7 6 3.9723 5.0059 0.0004 8 6 3.8378 5.8578 1.0945 9 6 4.4580 7.0903 1.0885 10 6 5.2206 7.4833 -0.0008 11 9 5.8249 8.6916 0.0017 12 6 5.3652 6.6432 -1.0904 13 6 4.7469 5.4018 -1.0965 14 8 4.8879 4.5762 -2.1639 15 6 5.7348 4.9711 -3.1356 16 1 6.2019 5.9435 -3.0823 17 6 6.0106 4.1269 -4.2001 18 7 6.8414 4.5103 -5.1455 19 14 5.2028 2.4452 -4.2920 20 1 3.9196 2.5522 -5.0317 21 1 6.1046 1.5009 -4.9993 22 1 4.9420 1.9455 -2.9182 23 6 4.0636 2.5133 0.0000 24 9 5.4127 2.5835 0.0005 25 6 3.4338 1.2820 0.0000 26 9 4.1679 0.1479 0.0007 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 0.2102 2.3150 -0.0005 31 1 1.3186 4.5092 0.0096 32 1 3.2447 5.5554 1.9450 33 1 4.3488 7.7516 1.9355 34 1 5.9600 6.9542 -1.9366 35 1 7.0341 3.9197 -5.8905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241041900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:03 Heat of formation + Delta-G solvation = -159.370951 kcal Electronic energy + Delta-G solvation = -27315.456984 eV Core-core repulsion = 22829.926219 eV Total energy + Delta-G solvation = -4485.530765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.49757 -49.91057 -49.58229 -41.33265 -40.76074 -38.72165 -37.81333 -34.55990 -33.00726 -31.57397 -31.19188 -29.62443 -28.08414 -27.30533 -24.57985 -23.85966 -23.34070 -22.47245 -20.11437 -19.76455 -19.44557 -18.66459 -18.39833 -17.67900 -17.35167 -17.30293 -16.93332 -16.64531 -16.64262 -16.45493 -15.94865 -15.91240 -15.68351 -15.62582 -15.39737 -15.15662 -15.00387 -14.29633 -14.18891 -13.90755 -13.51872 -13.41491 -13.16187 -13.02900 -12.62646 -12.48980 -12.39907 -12.24712 -12.18431 -11.90608 -11.61221 -11.00296 -9.91690 -9.85476 -9.46759 -9.02470 -8.60460 -6.32029 -0.23473 -0.13693 0.27329 0.46121 1.20709 1.24654 1.41213 1.93918 2.16681 2.26048 2.54188 2.80133 2.90616 3.01502 3.27863 3.38307 3.47900 3.71246 3.89928 3.95496 4.08185 4.17831 4.35491 4.40726 4.45492 4.54167 4.75527 4.76995 4.88512 4.97663 5.07974 5.14919 5.20297 5.22387 5.33414 5.49244 5.61624 5.76919 6.03469 6.17786 6.74061 7.43741 8.50931 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.006137 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.579856 B = 4561.683120 C = 6435.714449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.329 6.329 3 C 0.123 3.877 4 C -0.173 4.173 5 C -0.032 4.032 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.011 4.011 9 C -0.208 4.208 10 C 0.138 3.862 11 F -0.146 7.146 12 C -0.280 4.280 13 C 0.170 3.830 14 O -0.220 6.220 15 C -0.397 4.397 16 H 0.085 0.915 17 C 0.025 3.975 18 N -0.913 5.913 19 Si 0.951 3.049 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.271 1.271 23 C 0.096 3.904 24 F -0.139 7.139 25 C -0.007 4.007 26 F -0.143 7.143 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.194 0.806 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.118 0.882 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 -3.702 14.527 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.076 3.924 4 C -0.192 4.192 5 C -0.050 4.050 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.029 4.029 9 C -0.227 4.227 10 C 0.119 3.881 11 F -0.125 7.125 12 C -0.300 4.300 13 C 0.119 3.881 14 O -0.125 6.125 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.774 3.226 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.196 1.196 23 C 0.076 3.924 24 F -0.118 7.118 25 C -0.028 4.028 26 F -0.122 7.122 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.211 0.789 31 H 0.201 0.799 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.136 0.864 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.522 -4.172 14.250 22.967 hybrid contribution 1.410 -0.361 -0.982 1.756 sum -16.112 -4.534 13.268 21.358 Atomic orbital electron populations 1.23601 0.74658 1.06360 1.03589 1.86118 1.24964 1.25118 1.88071 1.18803 0.88663 0.87482 0.97445 1.21571 1.02477 0.89203 1.05900 1.21431 0.90648 0.99730 0.93175 1.18532 0.94392 0.89411 1.05490 1.17921 1.05812 0.95717 0.94580 1.21108 0.95678 0.90487 0.95591 1.21072 1.03056 0.99663 0.98908 1.17719 0.94733 0.80273 0.95387 1.91444 1.81719 1.42484 1.96851 1.21068 1.10579 0.96751 1.01645 1.19257 0.92983 0.88709 0.87201 1.83558 1.57974 1.44362 1.26611 1.20683 1.22888 1.03599 1.00165 0.89788 1.25064 0.96193 1.02069 0.94170 1.69709 1.34519 1.39327 1.11723 0.85496 0.79300 0.78873 0.78973 1.18033 1.19422 1.19627 1.17895 0.77312 0.93174 1.04033 1.91486 1.29552 1.97054 1.93665 1.17101 0.88409 0.81069 1.16220 1.91430 1.77266 1.48569 1.94951 0.86109 0.89710 0.90728 0.78854 0.79895 0.80084 0.81286 0.86396 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -7.86 10.35 -92.83 -0.96 -8.82 16 3 C 0.12 3.34 6.69 22.58 0.15 3.49 16 4 C -0.17 -3.30 9.02 22.33 0.20 -3.10 16 5 C -0.03 -0.71 9.73 22.48 0.22 -0.49 16 6 C -0.08 -2.52 4.95 -20.00 -0.10 -2.62 16 7 C -0.14 -4.88 5.02 -19.93 -0.10 -4.98 16 8 C -0.01 -0.29 9.73 22.47 0.22 -0.07 16 9 C -0.21 -5.63 10.01 22.31 0.22 -5.41 16 10 C 0.14 4.97 7.29 22.40 0.16 5.13 16 11 F -0.15 -5.19 17.26 44.97 0.78 -4.42 16 12 C -0.28 -12.39 9.14 22.40 0.20 -12.19 16 13 C 0.17 7.69 6.45 22.81 0.15 7.84 16 14 O -0.22 -11.69 7.78 -21.73 -0.17 -11.86 16 15 C -0.40 -23.37 9.94 67.91 0.68 -22.69 16 16 H 0.08 5.19 5.44 -2.91 -0.02 5.17 16 17 C 0.03 1.47 5.49 84.83 0.47 1.94 16 18 N -0.91 -54.99 13.96 21.61 0.30 -54.69 16 19 Si 0.95 47.14 28.62 68.60 1.96 49.10 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16 23 C 0.10 3.76 6.96 22.62 0.16 3.92 16 24 F -0.14 -6.43 16.57 44.97 0.75 -5.69 16 25 C -0.01 -0.27 7.31 22.45 0.16 -0.10 16 26 F -0.14 -5.73 17.02 44.97 0.77 -4.96 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.51 7.66 -2.38 -0.02 0.50 16 29 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 30 H 0.19 1.71 6.28 -2.91 -0.02 1.69 16 31 H 0.18 2.59 8.06 -2.92 -0.02 2.56 16 32 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.12 5.85 5.64 -2.91 -0.02 5.84 16 35 H 0.29 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -76.08 323.70 8.50 -67.58 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.17 Total: 1.86 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.90 Total: -28.10 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.30 Total: -54.69 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.13 Total: -20.68 kcal Atomic # 9 Polarization: -17.35 SS G_CDS: 2.29 Total: -15.06 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.96 Total: 49.10 kcal Total: -76.08 8.50 -67.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241041900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.793 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds