Wall clock time and date at job start Tue Mar 31 2020 14:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48508 * 109.47333 * 240.00620 * 3 2 1 5 5 H 1.48507 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47408 * 120.00198 * 3 2 1 7 7 C 1.37884 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87520 * 269.72106 * 10 9 7 12 12 C 1.38026 * 120.11997 * 180.27086 * 11 10 9 13 13 C 1.39334 * 119.87806 * 0.02562 * 12 11 10 14 14 C 1.48388 * 120.12066 * 179.97438 * 13 12 11 15 15 C 1.39324 * 120.10855 * 180.02562 * 14 13 12 16 16 C 1.38227 * 119.85336 * 180.02562 * 15 14 13 17 17 F 1.35098 * 119.96545 * 179.97438 * 16 15 14 18 18 C 1.38564 * 120.06790 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.22003 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.92823 * 180.02562 * 19 18 16 21 21 F 1.39898 * 109.46545 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.46881 * 120.00008 * 20 19 18 23 23 F 1.39891 * 109.47272 * 240.00286 * 20 19 18 24 24 C 1.38056 * 120.14337 * 359.68240 * 19 18 16 25 25 C 1.39342 * 119.75893 * 359.97438 * 13 12 11 26 26 C 1.38015 * 119.87593 * 0.02562 * 25 13 12 27 27 H 0.97004 * 119.99988 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47507 * 59.99596 * 9 7 2 29 29 H 1.09006 * 109.46618 * 299.99648 * 9 7 2 30 30 H 1.08001 * 119.94484 * 0.27755 * 11 10 9 31 31 H 1.08000 * 120.06023 * 179.97438 * 12 11 10 32 32 H 1.07999 * 120.07417 * 0.02562 * 15 14 13 33 33 H 1.08001 * 119.88568 * 179.97438 * 18 16 15 34 34 H 1.08010 * 120.02919 * 180.29608 * 24 19 18 35 35 H 1.08000 * 120.06278 * 180.02562 * 25 13 12 36 36 H 1.08005 * 119.93944 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6735 -4.1721 -1.1999 12 6 3.5661 -5.2249 -1.2058 13 6 4.0202 -5.7566 -0.0006 14 6 4.9794 -6.8888 -0.0006 15 6 5.4329 -7.4206 1.2046 16 6 6.3268 -8.4749 1.1984 17 9 6.7684 -8.9921 2.3658 18 6 6.7712 -9.0013 -0.0039 19 6 6.3231 -8.4758 -1.2016 20 6 6.8103 -9.0537 -2.5053 21 9 7.6994 -10.1025 -2.2471 22 9 5.7204 -9.5363 -3.2377 23 9 7.4630 -8.0590 -3.2414 24 6 5.4249 -7.4274 -1.2058 25 6 3.5704 -5.2213 1.2047 26 6 2.6778 -4.1686 1.1988 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8898 30 1 2.3207 -3.7594 -2.1335 31 1 3.9113 -5.6363 -2.1428 32 1 5.0868 -7.0101 2.1416 33 1 7.4700 -9.8248 -0.0053 34 1 5.0723 -7.0214 -2.1425 35 1 3.9195 -5.6294 2.1417 36 1 2.3281 -3.7532 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241083532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:07 Heat of formation + Delta-G solvation = -159.524413 kcal Electronic energy + Delta-G solvation = -25567.132867 eV Core-core repulsion = 21093.968237 eV Total energy + Delta-G solvation = -4473.164630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.46409 -49.24802 -47.98864 -47.90556 -40.00716 -38.33694 -34.09483 -32.72304 -31.82336 -30.53488 -30.06554 -26.97588 -26.54806 -24.05354 -23.15392 -22.20561 -21.51380 -20.33562 -18.83494 -18.77735 -18.71362 -16.99068 -16.60046 -16.46119 -16.40109 -15.94702 -15.69995 -14.82861 -14.81143 -14.65936 -14.48011 -14.35305 -14.29998 -14.08616 -14.06795 -13.50627 -13.39698 -13.27703 -12.98269 -12.76361 -12.57996 -12.17105 -11.97910 -11.63614 -11.37537 -11.26243 -10.79803 -10.64530 -10.35143 -10.02011 -9.64827 -9.47389 -9.22669 -8.55075 -8.50262 -7.71967 -6.13312 -4.18303 0.32980 0.57532 1.84297 1.90493 2.28240 3.10664 3.26559 3.30481 3.31231 3.34232 3.61363 3.91553 4.09360 4.26978 4.35555 4.43008 4.52372 4.57848 4.77022 4.99510 5.18988 5.21362 5.29422 5.48834 5.61418 5.63783 5.68154 5.79412 5.99635 6.11790 6.30084 6.39468 6.48937 6.82053 6.95002 6.99449 7.35394 7.49514 7.67843 7.81571 8.19233 8.86579 9.46262 10.96336 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.002640 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.040626 B =10605.379557 C =11370.131219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.044 3.956 10 C -0.013 4.013 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.103 4.103 14 C 0.018 3.982 15 C -0.127 4.127 16 C 0.108 3.892 17 F -0.132 7.132 18 C -0.126 4.126 19 C -0.149 4.149 20 C 0.512 3.488 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.173 7.173 24 C -0.083 4.083 25 C -0.098 4.098 26 C -0.125 4.125 27 H 0.264 0.736 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.319 -19.016 -1.348 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.013 4.013 11 C -0.143 4.143 12 C -0.116 4.116 13 C -0.103 4.103 14 C 0.018 3.982 15 C -0.146 4.146 16 C 0.089 3.911 17 F -0.110 7.110 18 C -0.145 4.145 19 C -0.151 4.151 20 C 0.458 3.542 21 F -0.158 7.158 22 F -0.154 7.154 23 F -0.154 7.154 24 C -0.101 4.101 25 C -0.116 4.116 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.135 0.865 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.189 -18.933 -1.341 22.557 hybrid contribution 0.665 0.763 0.003 1.012 sum 12.854 -18.170 -1.338 22.298 Atomic orbital electron populations 1.69939 1.06061 1.27121 1.49990 1.25009 0.94900 0.99323 0.94973 0.86574 0.79536 0.82651 0.78806 1.20087 1.21168 1.20110 1.20979 0.93020 0.89698 1.51737 0.92431 1.18437 0.92583 0.89572 0.98706 1.20914 0.94536 0.93925 0.91882 1.21083 0.98179 0.96266 0.98750 1.21108 0.97384 0.96696 0.96368 1.18309 1.00316 0.97298 0.94353 1.18591 0.94441 0.93960 0.91230 1.21474 0.97249 0.95746 1.00087 1.17290 0.97395 0.95273 0.81158 1.91539 1.87973 1.85817 1.45720 1.20834 1.01860 1.01717 0.90070 1.19594 1.03003 1.00766 0.91718 1.18152 0.75360 0.75888 0.84827 1.93170 1.69549 1.59078 1.94001 1.93240 1.54377 1.88503 1.79311 1.93241 1.81809 1.61222 1.79106 1.21037 0.95295 0.94282 0.99529 1.21100 0.97427 0.96696 0.96355 1.21078 0.98193 0.96296 0.98741 0.92646 0.95030 0.95050 0.85758 0.86487 0.83372 0.83385 0.83835 0.86507 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.83 9.09 -34.44 -0.31 -14.14 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.06 5.10 -29.04 -0.15 0.91 16 10 C -0.01 -0.25 5.07 -104.56 -0.53 -0.78 16 11 C -0.12 -2.20 9.68 -39.63 -0.38 -2.58 16 12 C -0.10 -1.44 9.43 -39.25 -0.37 -1.81 16 13 C -0.10 -1.45 5.88 -104.90 -0.62 -2.07 16 14 C 0.02 0.21 5.87 -104.91 -0.62 -0.40 16 15 C -0.13 -1.37 9.41 -39.18 -0.37 -1.74 16 16 C 0.11 1.12 7.29 -39.47 -0.29 0.83 16 17 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 18 C -0.13 -1.21 9.41 -39.45 -0.37 -1.59 16 19 C -0.15 -1.52 5.37 -104.68 -0.56 -2.08 16 20 C 0.51 5.05 3.31 36.01 0.12 5.17 16 21 F -0.18 -1.69 15.96 2.25 0.04 -1.65 16 22 F -0.17 -1.79 17.23 2.25 0.04 -1.75 16 23 F -0.17 -1.81 17.24 2.25 0.04 -1.77 16 24 C -0.08 -0.91 8.97 -39.25 -0.35 -1.26 16 25 C -0.10 -1.44 9.43 -39.25 -0.37 -1.81 16 26 C -0.13 -2.20 9.68 -39.63 -0.38 -2.58 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.12 1.40 6.21 -52.49 -0.33 1.07 16 32 H 0.15 1.40 6.21 -52.49 -0.33 1.07 16 33 H 0.15 1.18 7.14 -52.49 -0.37 0.80 16 34 H 0.14 1.40 6.21 -52.48 -0.33 1.08 16 35 H 0.12 1.37 6.21 -52.49 -0.33 1.04 16 36 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -28.06 330.59 -7.70 -35.76 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -2.90 Total: -0.91 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -5.65 Total: -24.38 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.74 Total: -24.79 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.15 Total: -6.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.06 -7.70 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.763 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds