Wall clock time and date at job start Tue Mar 31 2020 14:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48508 * 109.47333 * 240.00620 * 3 2 1 5 5 H 1.48507 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47408 * 120.00198 * 3 2 1 7 7 C 1.37884 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87520 * 269.72106 * 10 9 7 12 12 C 1.38026 * 120.11997 * 180.27086 * 11 10 9 13 13 C 1.39334 * 119.87806 * 0.02562 * 12 11 10 14 14 C 1.48388 * 120.12066 * 179.97438 * 13 12 11 15 15 C 1.39324 * 120.10855 * 180.02562 * 14 13 12 16 16 C 1.38227 * 119.85336 * 180.02562 * 15 14 13 17 17 F 1.35098 * 119.96545 * 179.97438 * 16 15 14 18 18 C 1.38564 * 120.06790 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.22003 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.92823 * 180.02562 * 19 18 16 21 21 F 1.39898 * 109.46545 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.46881 * 120.00008 * 20 19 18 23 23 F 1.39891 * 109.47272 * 240.00286 * 20 19 18 24 24 C 1.38056 * 120.14337 * 359.68240 * 19 18 16 25 25 C 1.39342 * 119.75893 * 359.97438 * 13 12 11 26 26 C 1.38015 * 119.87593 * 0.02562 * 25 13 12 27 27 H 0.97004 * 119.99988 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47507 * 59.99596 * 9 7 2 29 29 H 1.09006 * 109.46618 * 299.99648 * 9 7 2 30 30 H 1.08001 * 119.94484 * 0.27755 * 11 10 9 31 31 H 1.08000 * 120.06023 * 179.97438 * 12 11 10 32 32 H 1.07999 * 120.07417 * 0.02562 * 15 14 13 33 33 H 1.08001 * 119.88568 * 179.97438 * 18 16 15 34 34 H 1.08010 * 120.02919 * 180.29608 * 24 19 18 35 35 H 1.08000 * 120.06278 * 180.02562 * 25 13 12 36 36 H 1.08005 * 119.93944 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6735 -4.1721 -1.1999 12 6 3.5661 -5.2249 -1.2058 13 6 4.0202 -5.7566 -0.0006 14 6 4.9794 -6.8888 -0.0006 15 6 5.4329 -7.4206 1.2046 16 6 6.3268 -8.4749 1.1984 17 9 6.7684 -8.9921 2.3658 18 6 6.7712 -9.0013 -0.0039 19 6 6.3231 -8.4758 -1.2016 20 6 6.8103 -9.0537 -2.5053 21 9 7.6994 -10.1025 -2.2471 22 9 5.7204 -9.5363 -3.2377 23 9 7.4630 -8.0590 -3.2414 24 6 5.4249 -7.4274 -1.2058 25 6 3.5704 -5.2213 1.2047 26 6 2.6778 -4.1686 1.1988 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8898 30 1 2.3207 -3.7594 -2.1335 31 1 3.9113 -5.6363 -2.1428 32 1 5.0868 -7.0101 2.1416 33 1 7.4700 -9.8248 -0.0053 34 1 5.0723 -7.0214 -2.1425 35 1 3.9195 -5.6294 2.1417 36 1 2.3281 -3.7532 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241083532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:06 Heat of formation + Delta-G solvation = -170.525740 kcal Electronic energy + Delta-G solvation = -25567.609921 eV Core-core repulsion = 21093.968237 eV Total energy + Delta-G solvation = -4473.641683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.23728 -50.04682 -48.75205 -48.69251 -41.00357 -39.48626 -35.69183 -34.20859 -32.84098 -31.80728 -31.34450 -28.55311 -27.35721 -25.60544 -24.19123 -23.48940 -22.57178 -21.60377 -19.71327 -19.55183 -19.49403 -18.52393 -17.85164 -17.45589 -17.33904 -16.91139 -16.74706 -16.41623 -15.76720 -15.66781 -15.59264 -15.43740 -15.12543 -14.88584 -14.84407 -14.59340 -14.52065 -14.41843 -14.23860 -14.07461 -13.68782 -13.37712 -13.27283 -13.04476 -12.95977 -12.56963 -12.50134 -12.29471 -11.68879 -11.64590 -11.43291 -10.74115 -10.60800 -10.12250 -9.80122 -8.99242 -8.20525 -6.34608 -0.57110 -0.26490 0.56709 0.75531 1.40613 1.42459 1.50146 1.50811 2.18011 2.40268 2.53023 2.82628 3.05139 3.06537 3.10072 3.33049 3.48757 3.70252 3.77529 3.93637 4.01569 4.12632 4.24220 4.35746 4.50257 4.62538 4.71358 4.76264 4.85566 5.02634 5.10247 5.12307 5.34176 5.37550 5.49341 5.59774 5.62516 5.73922 6.04866 6.06721 6.20590 6.78266 7.34272 8.87855 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.002640 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.040626 B =10605.379557 C =11370.131219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.051 4.051 11 C -0.135 4.135 12 C -0.095 4.095 13 C -0.086 4.086 14 C 0.000 4.000 15 C -0.119 4.119 16 C 0.103 3.897 17 F -0.133 7.133 18 C -0.112 4.112 19 C -0.153 4.153 20 C 0.517 3.483 21 F -0.174 7.174 22 F -0.176 7.176 23 F -0.176 7.176 24 C -0.079 4.079 25 C -0.094 4.094 26 C -0.135 4.135 27 H 0.266 0.734 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -20.593 -1.260 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.051 4.051 11 C -0.153 4.153 12 C -0.113 4.113 13 C -0.086 4.086 14 C -0.001 4.001 15 C -0.137 4.137 16 C 0.083 3.917 17 F -0.111 7.111 18 C -0.130 4.130 19 C -0.155 4.155 20 C 0.463 3.537 21 F -0.155 7.155 22 F -0.157 7.157 23 F -0.157 7.157 24 C -0.097 4.097 25 C -0.111 4.111 26 C -0.153 4.153 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.137 0.863 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.786 -20.524 -1.253 25.327 hybrid contribution -0.033 1.041 -0.024 1.042 sum 14.753 -19.483 -1.277 24.472 Atomic orbital electron populations 1.70066 1.07661 1.28051 1.51150 1.25909 0.95737 1.03069 0.94561 0.85518 0.78311 0.78170 0.79189 1.19264 1.20689 1.19246 1.21345 0.93128 0.91169 1.51163 0.92609 1.18151 0.92989 0.91196 0.96061 1.20561 0.96042 0.94419 0.94051 1.21077 0.99165 0.97403 0.97650 1.21358 0.96210 0.95484 0.98205 1.18553 0.99275 0.96965 0.93797 1.18393 0.95307 0.94171 0.92190 1.21611 0.96554 0.95347 1.00236 1.17289 0.97624 0.95409 0.81348 1.91546 1.87978 1.85807 1.45783 1.21076 1.00992 1.01378 0.89588 1.19594 1.03105 1.00787 0.92010 1.18059 0.75260 0.75821 0.84585 1.93179 1.69436 1.58922 1.93955 1.93240 1.54533 1.88528 1.79388 1.93239 1.81879 1.61411 1.79209 1.21164 0.94832 0.94052 0.99623 1.21364 0.96162 0.95407 0.98209 1.21081 0.99153 0.97426 0.97623 0.92541 0.97679 0.97655 0.86305 0.83398 0.82059 0.81573 0.82861 0.83184 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -29.51 9.09 25.60 0.23 -29.28 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.74 5.10 29.10 0.15 2.89 16 10 C -0.05 -2.10 5.07 -19.83 -0.10 -2.21 16 11 C -0.13 -4.83 9.68 22.24 0.22 -4.62 16 12 C -0.10 -2.65 9.43 22.48 0.21 -2.44 16 13 C -0.09 -2.23 5.88 -20.04 -0.12 -2.35 16 14 C 0.00 -0.01 5.87 -20.05 -0.12 -0.13 16 15 C -0.12 -2.15 9.41 22.53 0.21 -1.94 16 16 C 0.10 1.77 7.29 22.34 0.16 1.93 16 17 F -0.13 -2.39 17.26 44.97 0.78 -1.61 16 18 C -0.11 -1.76 9.41 22.35 0.21 -1.55 16 19 C -0.15 -2.62 5.37 -19.90 -0.11 -2.72 16 20 C 0.52 8.74 3.31 71.24 0.24 8.98 16 21 F -0.17 -2.81 15.96 44.97 0.72 -2.10 16 22 F -0.18 -3.18 17.23 44.97 0.77 -2.41 16 23 F -0.18 -3.25 17.24 44.97 0.78 -2.47 16 24 C -0.08 -1.46 8.97 22.49 0.20 -1.25 16 25 C -0.09 -2.58 9.43 22.48 0.21 -2.37 16 26 C -0.13 -4.79 9.68 22.24 0.22 -4.58 16 27 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 28 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 29 H 0.01 0.28 8.08 -2.38 -0.02 0.27 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.15 3.13 6.21 -2.91 -0.02 3.11 16 32 H 0.16 2.42 6.21 -2.91 -0.02 2.41 16 33 H 0.17 2.00 7.14 -2.91 -0.02 1.98 16 34 H 0.15 2.48 6.21 -2.91 -0.02 2.46 16 35 H 0.15 3.05 6.21 -2.91 -0.02 3.03 16 36 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -62.15 330.59 8.78 -53.37 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.15 Total: 5.46 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 2.28 Total: -40.85 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.83 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 3.04 Total: -8.59 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.15 8.78 -53.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.160 kcal (2) G-P(sol) polarization free energy of solvation -62.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds