Wall clock time and date at job start Tue Mar 31 2020 14:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48505 * 109.47271 * 270.00637 * 3 2 1 5 5 H 1.48502 * 109.46962 * 30.00135 * 3 2 1 6 6 H 1.48491 * 109.47398 * 150.00454 * 3 2 1 7 7 C 1.37883 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99445 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46594 * 180.02562 * 9 7 2 11 11 C 1.38323 * 119.87750 * 90.00278 * 10 9 7 12 12 C 1.38013 * 120.11881 * 179.97438 * 11 10 9 13 13 C 1.39346 * 119.88138 * 0.02562 * 12 11 10 14 14 C 1.48376 * 120.12568 * 179.97438 * 13 12 11 15 15 C 1.39372 * 120.09127 * 359.97438 * 14 13 12 16 16 C 1.37957 * 119.90165 * 180.02562 * 15 14 13 17 17 C 1.38569 * 120.09520 * 359.97438 * 16 15 14 18 18 F 1.35102 * 119.90635 * 180.27819 * 17 16 15 19 19 C 1.38535 * 120.19173 * 0.02562 * 17 16 15 20 20 C 1.50705 * 119.95023 * 179.97438 * 19 17 16 21 21 F 1.39897 * 109.46581 * 179.97438 * 20 19 17 22 22 F 1.39898 * 109.47048 * 300.00129 * 20 19 17 23 23 F 1.39901 * 109.47111 * 59.99998 * 20 19 17 24 24 C 1.37990 * 120.09542 * 359.97438 * 19 17 16 25 25 C 1.39341 * 119.75208 * 0.25071 * 13 12 11 26 26 C 1.38021 * 119.87952 * 359.46831 * 25 13 12 27 27 H 0.97004 * 120.00254 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47422 * 60.00283 * 9 7 2 29 29 H 1.09003 * 109.47345 * 299.99813 * 9 7 2 30 30 H 1.07997 * 119.93767 * 359.97334 * 11 10 9 31 31 H 1.07999 * 120.06393 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.05395 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.95419 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.04983 * 179.97438 * 24 19 17 35 35 H 1.07999 * 120.05981 * 179.75129 * 25 13 12 36 36 H 1.08000 * 119.93967 * 180.27532 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6782 -4.1683 1.1989 12 6 3.5747 -5.2176 1.2047 13 6 4.0293 -5.7490 -0.0006 14 6 4.9935 -6.8767 -0.0007 15 6 5.4481 -7.4076 1.2052 16 6 6.3450 -8.4557 1.2005 17 6 6.7936 -8.9811 -0.0007 18 9 7.6677 -10.0112 -0.0008 19 6 6.3444 -8.4564 -1.2016 20 6 6.8363 -9.0316 -2.5048 21 9 6.2463 -8.3433 -3.5704 22 9 8.2272 -8.9002 -2.5771 23 9 6.4914 -10.3855 -2.5767 24 6 5.4472 -7.4080 -1.2061 25 6 3.5792 -5.2137 -1.2058 26 6 2.6782 -4.1682 -1.1999 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.3256 -3.7553 2.1324 31 1 3.9234 -5.6261 2.1416 32 1 5.0993 -6.9985 2.1419 33 1 6.6981 -8.8674 2.1344 34 1 5.0978 -6.9993 -2.1428 35 1 3.9314 -5.6191 -2.1428 36 1 2.3254 -3.7554 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241094993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:59 Heat of formation + Delta-G solvation = -158.325825 kcal Electronic energy + Delta-G solvation = -25753.339622 eV Core-core repulsion = 21280.226967 eV Total energy + Delta-G solvation = -4473.112655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.46237 -49.33864 -47.90362 -47.86605 -39.99559 -38.28981 -33.96061 -32.68672 -32.22713 -30.54407 -29.91079 -26.85660 -26.38198 -23.97603 -23.35111 -22.16231 -21.54967 -20.30894 -18.84010 -18.75958 -18.66424 -17.60349 -16.57280 -16.44777 -16.19405 -16.04241 -15.18611 -14.82919 -14.72416 -14.58816 -14.46932 -14.29867 -14.18738 -14.02496 -13.97160 -13.69423 -13.47930 -13.30186 -13.23003 -12.73116 -12.57587 -12.16672 -11.81398 -11.63971 -11.34643 -11.26130 -10.79653 -10.62396 -10.33139 -9.87672 -9.73207 -9.62197 -9.22768 -8.53901 -8.50126 -7.64738 -6.13236 -4.18094 0.31410 0.60801 1.85685 1.91048 2.32203 3.14122 3.24932 3.31763 3.35414 3.35477 3.57892 3.79254 4.11087 4.28024 4.30065 4.43871 4.47565 4.69006 4.79705 5.06434 5.21137 5.21540 5.34476 5.49069 5.55208 5.65275 5.76549 5.80749 6.00966 6.14547 6.27165 6.40977 6.51288 6.84187 6.96755 7.00770 7.36445 7.51057 7.68889 7.81848 8.19711 8.87080 9.46516 10.96411 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002533 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.183129 B =11053.443421 C =11520.083785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.016 4.016 11 C -0.124 4.124 12 C -0.101 4.101 13 C -0.098 4.098 14 C -0.022 4.022 15 C -0.063 4.063 16 C -0.146 4.146 17 C 0.131 3.869 18 F -0.128 7.128 19 C -0.215 4.215 20 C 0.514 3.486 21 F -0.172 7.172 22 F -0.173 7.173 23 F -0.174 7.174 24 C -0.050 4.050 25 C -0.102 4.102 26 C -0.124 4.124 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.042 -18.592 0.008 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.119 4.119 13 C -0.098 4.098 14 C -0.023 4.023 15 C -0.080 4.080 16 C -0.165 4.165 17 C 0.112 3.888 18 F -0.107 7.107 19 C -0.217 4.217 20 C 0.459 3.541 21 F -0.154 7.154 22 F -0.155 7.155 23 F -0.155 7.155 24 C -0.068 4.068 25 C -0.120 4.120 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.939 -18.534 -0.030 22.047 hybrid contribution 0.726 0.685 -0.258 1.031 sum 12.665 -17.849 -0.288 21.888 Atomic orbital electron populations 1.69947 1.06062 1.26994 1.50121 1.25010 0.94894 0.99327 0.95006 0.86520 0.79823 0.83016 0.78268 1.20513 1.21105 1.19760 1.21020 0.93048 0.89697 1.51543 0.92392 1.18434 0.92604 0.89592 0.98669 1.20895 0.94761 0.94010 0.91897 1.21066 0.98146 0.96334 0.98681 1.21073 0.97642 0.96865 0.96312 1.18327 1.00016 0.97214 0.94266 1.18888 0.96070 0.95275 0.92030 1.21391 0.94107 0.93726 0.98806 1.21082 0.99994 0.98665 0.96714 1.17288 0.91027 0.87161 0.93351 1.91556 1.66240 1.55547 1.97329 1.19944 1.06757 1.03802 0.91176 1.18032 0.75526 0.76023 0.84488 1.93187 1.83826 1.79365 1.58975 1.93233 1.29947 1.95579 1.96714 1.93232 1.91909 1.33644 1.96719 1.21023 0.93273 0.92564 0.99963 1.21113 0.97568 0.96867 0.96435 1.21076 0.98026 0.96338 0.98720 0.92715 0.95076 0.95083 0.85860 0.86516 0.83569 0.83439 0.83152 0.86581 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.78 9.09 -34.44 -0.31 -14.09 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.06 5.10 -29.03 -0.15 0.91 16 10 C -0.02 -0.31 5.07 -104.56 -0.53 -0.84 16 11 C -0.12 -2.16 9.68 -39.63 -0.38 -2.54 16 12 C -0.10 -1.44 9.43 -39.25 -0.37 -1.81 16 13 C -0.10 -1.37 5.88 -104.90 -0.62 -1.98 16 14 C -0.02 -0.26 5.88 -104.90 -0.62 -0.88 16 15 C -0.06 -0.59 9.42 -39.26 -0.37 -0.96 16 16 C -0.15 -1.29 10.01 -39.56 -0.40 -1.69 16 17 C 0.13 1.40 7.13 -39.35 -0.28 1.12 16 18 F -0.13 -1.44 16.44 2.25 0.04 -1.40 16 19 C -0.21 -2.40 5.37 -104.60 -0.56 -2.96 16 20 C 0.51 5.84 3.02 36.01 0.11 5.95 16 21 F -0.17 -1.92 15.97 2.25 0.04 -1.89 16 22 F -0.17 -2.06 17.05 2.25 0.04 -2.02 16 23 F -0.17 -2.04 17.04 2.25 0.04 -2.00 16 24 C -0.05 -0.56 8.81 -39.27 -0.35 -0.91 16 25 C -0.10 -1.51 9.43 -39.25 -0.37 -1.88 16 26 C -0.12 -2.18 9.68 -39.63 -0.38 -2.56 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 31 H 0.12 1.28 6.21 -52.49 -0.33 0.95 16 32 H 0.15 1.09 6.21 -52.49 -0.33 0.77 16 33 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.54 5.30 -52.49 -0.28 1.26 16 35 H 0.12 1.41 6.21 -52.49 -0.33 1.08 16 36 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -28.65 329.41 -7.75 -36.40 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -2.90 Total: -1.52 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -5.67 Total: -23.59 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.74 Total: -24.77 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.15 Total: -7.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.65 -7.75 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241094993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.929 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds