Wall clock time and date at job start Tue Mar 31 2020 14:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48505 * 109.47271 * 270.00637 * 3 2 1 5 5 H 1.48502 * 109.46962 * 30.00135 * 3 2 1 6 6 H 1.48491 * 109.47398 * 150.00454 * 3 2 1 7 7 C 1.37883 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99445 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46594 * 180.02562 * 9 7 2 11 11 C 1.38323 * 119.87750 * 90.00278 * 10 9 7 12 12 C 1.38013 * 120.11881 * 179.97438 * 11 10 9 13 13 C 1.39346 * 119.88138 * 0.02562 * 12 11 10 14 14 C 1.48376 * 120.12568 * 179.97438 * 13 12 11 15 15 C 1.39372 * 120.09127 * 359.97438 * 14 13 12 16 16 C 1.37957 * 119.90165 * 180.02562 * 15 14 13 17 17 C 1.38569 * 120.09520 * 359.97438 * 16 15 14 18 18 F 1.35102 * 119.90635 * 180.27819 * 17 16 15 19 19 C 1.38535 * 120.19173 * 0.02562 * 17 16 15 20 20 C 1.50705 * 119.95023 * 179.97438 * 19 17 16 21 21 F 1.39897 * 109.46581 * 179.97438 * 20 19 17 22 22 F 1.39898 * 109.47048 * 300.00129 * 20 19 17 23 23 F 1.39901 * 109.47111 * 59.99998 * 20 19 17 24 24 C 1.37990 * 120.09542 * 359.97438 * 19 17 16 25 25 C 1.39341 * 119.75208 * 0.25071 * 13 12 11 26 26 C 1.38021 * 119.87952 * 359.46831 * 25 13 12 27 27 H 0.97004 * 120.00254 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47422 * 60.00283 * 9 7 2 29 29 H 1.09003 * 109.47345 * 299.99813 * 9 7 2 30 30 H 1.07997 * 119.93767 * 359.97334 * 11 10 9 31 31 H 1.07999 * 120.06393 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.05395 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.95419 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.04983 * 179.97438 * 24 19 17 35 35 H 1.07999 * 120.05981 * 179.75129 * 25 13 12 36 36 H 1.08000 * 119.93967 * 180.27532 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6782 -4.1683 1.1989 12 6 3.5747 -5.2176 1.2047 13 6 4.0293 -5.7490 -0.0006 14 6 4.9935 -6.8767 -0.0007 15 6 5.4481 -7.4076 1.2052 16 6 6.3450 -8.4557 1.2005 17 6 6.7936 -8.9811 -0.0007 18 9 7.6677 -10.0112 -0.0008 19 6 6.3444 -8.4564 -1.2016 20 6 6.8363 -9.0316 -2.5048 21 9 6.2463 -8.3433 -3.5704 22 9 8.2272 -8.9002 -2.5771 23 9 6.4914 -10.3855 -2.5767 24 6 5.4472 -7.4080 -1.2061 25 6 3.5792 -5.2137 -1.2058 26 6 2.6782 -4.1682 -1.1999 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.3256 -3.7553 2.1324 31 1 3.9234 -5.6261 2.1416 32 1 5.0993 -6.9985 2.1419 33 1 6.6981 -8.8674 2.1344 34 1 5.0978 -6.9993 -2.1428 35 1 3.9314 -5.6191 -2.1428 36 1 2.3254 -3.7554 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241094993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:58 Heat of formation + Delta-G solvation = -170.136434 kcal Electronic energy + Delta-G solvation = -25753.851768 eV Core-core repulsion = 21280.226967 eV Total energy + Delta-G solvation = -4473.624802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.34966 -50.17611 -48.78972 -48.76992 -40.96667 -39.42431 -35.62682 -34.01926 -33.26565 -31.76659 -31.26085 -28.39453 -27.26281 -25.48625 -24.38015 -23.40967 -22.63058 -21.57539 -19.72956 -19.65340 -19.54465 -18.51999 -18.45193 -17.49494 -17.29870 -16.87142 -16.60373 -16.03431 -15.72439 -15.70340 -15.62592 -15.19633 -15.14021 -14.92496 -14.91448 -14.79812 -14.59086 -14.47872 -14.24754 -14.12478 -13.72296 -13.51687 -13.25760 -13.04441 -12.74416 -12.63137 -12.40149 -12.34101 -11.60546 -11.59362 -11.40860 -10.60937 -10.58097 -10.37485 -9.76750 -8.88216 -8.19774 -6.34060 -0.57036 -0.19625 0.60000 0.77795 1.40887 1.41056 1.46054 1.52588 2.24350 2.40944 2.49465 2.75302 2.95533 3.08763 3.10511 3.24823 3.50615 3.55678 3.92728 3.95176 4.09629 4.17158 4.37787 4.41926 4.61710 4.66077 4.70407 4.76452 4.91951 5.09731 5.14182 5.18185 5.35365 5.40091 5.51553 5.63327 5.67378 5.75172 6.07730 6.09329 6.22935 6.79144 7.34871 8.88431 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002533 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.183129 B =11053.443421 C =11520.083785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.055 4.055 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.081 4.081 14 C -0.041 4.041 15 C -0.049 4.049 16 C -0.135 4.135 17 C 0.127 3.873 18 F -0.133 7.133 19 C -0.226 4.226 20 C 0.513 3.487 21 F -0.173 7.173 22 F -0.178 7.178 23 F -0.177 7.177 24 C -0.049 4.049 25 C -0.103 4.103 26 C -0.136 4.136 27 H 0.265 0.735 28 H 0.002 0.998 29 H 0.006 0.994 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.451 -19.945 1.200 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.055 4.055 11 C -0.152 4.152 12 C -0.110 4.110 13 C -0.081 4.081 14 C -0.041 4.041 15 C -0.066 4.066 16 C -0.153 4.153 17 C 0.108 3.892 18 F -0.111 7.111 19 C -0.228 4.228 20 C 0.459 3.541 21 F -0.154 7.154 22 F -0.159 7.159 23 F -0.159 7.159 24 C -0.067 4.067 25 C -0.120 4.120 26 C -0.154 4.154 27 H 0.074 0.926 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.139 0.861 31 H 0.176 0.824 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.356 -19.901 1.158 24.566 hybrid contribution 0.073 0.908 -0.635 1.110 sum 14.430 -18.993 0.522 23.859 Atomic orbital electron populations 1.70071 1.07667 1.27963 1.51282 1.25910 0.95733 1.03076 0.94610 0.85461 0.78678 0.78516 0.78511 1.19858 1.20574 1.18872 1.21375 0.93117 0.91167 1.50950 0.92622 1.18149 0.93018 0.91261 0.95978 1.20543 0.96273 0.94524 0.94120 1.21100 0.99116 0.97505 0.97477 1.21394 0.96041 0.95308 0.98284 1.18583 0.98974 0.96861 0.93671 1.18779 0.96754 0.95372 0.93203 1.21692 0.92992 0.92988 0.98935 1.21405 0.98911 0.97815 0.97205 1.17587 0.90771 0.86951 0.93935 1.91551 1.66408 1.55789 1.97375 1.19946 1.07369 1.04258 0.91204 1.18110 0.75333 0.75898 0.84790 1.93185 1.83790 1.79329 1.59085 1.93223 1.30353 1.95590 1.96757 1.93223 1.91916 1.33984 1.96758 1.21065 0.93017 0.92386 1.00239 1.21347 0.96547 0.95779 0.98352 1.21044 0.99166 0.97583 0.97603 0.92566 0.97919 0.97588 0.86144 0.82366 0.80892 0.80231 0.82750 0.83975 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -29.34 9.09 25.60 0.23 -29.10 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.05 2.73 5.10 29.10 0.15 2.88 16 10 C -0.05 -2.25 5.07 -19.82 -0.10 -2.35 16 11 C -0.13 -4.62 9.68 22.24 0.22 -4.40 16 12 C -0.09 -2.38 9.43 22.48 0.21 -2.17 16 13 C -0.08 -2.03 5.88 -20.04 -0.12 -2.14 16 14 C -0.04 -0.80 5.88 -20.04 -0.12 -0.92 16 15 C -0.05 -0.68 9.42 22.48 0.21 -0.47 16 16 C -0.14 -1.75 10.01 22.28 0.22 -1.53 16 17 C 0.13 2.30 7.13 22.42 0.16 2.46 16 18 F -0.13 -2.62 16.44 44.97 0.74 -1.88 16 19 C -0.23 -4.48 5.37 -19.85 -0.11 -4.58 16 20 C 0.51 10.83 3.02 71.24 0.22 11.04 16 21 F -0.17 -3.61 15.97 44.97 0.72 -2.89 16 22 F -0.18 -3.96 17.05 44.97 0.77 -3.20 16 23 F -0.18 -3.91 17.04 44.97 0.77 -3.15 16 24 C -0.05 -0.96 8.81 22.47 0.20 -0.76 16 25 C -0.10 -2.90 9.43 22.48 0.21 -2.69 16 26 C -0.14 -4.91 9.68 22.24 0.22 -4.70 16 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 29 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 30 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.16 2.67 6.21 -2.91 -0.02 2.65 16 32 H 0.17 1.49 6.21 -2.91 -0.02 1.47 16 33 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.16 2.79 5.30 -2.91 -0.02 2.78 16 35 H 0.14 3.18 6.21 -2.91 -0.02 3.16 16 36 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -64.60 329.41 8.71 -55.88 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.15 Total: 3.36 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 2.26 Total: -38.70 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.28 Total: -54.79 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 2.99 Total: -11.12 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.60 8.71 -55.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241094993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.252 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds