Wall clock time and date at job start Tue Mar 31 2020 14:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48498 * 109.46942 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47353 * 30.00047 * 3 2 1 6 6 H 1.48505 * 109.47083 * 150.00275 * 3 2 1 7 7 C 1.37882 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99465 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99922 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47099 * 179.97438 * 9 7 2 11 11 C 1.38350 * 119.93871 * 270.02501 * 10 9 7 12 12 C 1.38302 * 120.24429 * 180.02562 * 11 10 9 13 13 C 1.38042 * 120.12082 * 359.71462 * 12 11 10 14 14 C 1.39326 * 119.87470 * 0.54124 * 13 12 11 15 15 C 1.48386 * 120.11876 * 179.74157 * 14 13 12 16 16 C 1.39363 * 120.09438 * 179.44880 * 15 14 13 17 17 C 1.37957 * 119.90386 * 179.69533 * 16 15 14 18 18 C 1.38571 * 120.09238 * 0.58005 * 17 16 15 19 19 F 1.35104 * 119.90005 * 179.74589 * 18 17 16 20 20 C 1.38523 * 120.19238 * 359.71428 * 18 17 16 21 21 C 1.50701 * 119.95333 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47481 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47201 * 299.97973 * 21 20 18 24 24 F 1.39902 * 109.47151 * 59.97837 * 21 20 18 25 25 C 1.37992 * 120.09927 * 359.97438 * 20 18 17 26 26 C 1.37994 * 119.94277 * 89.99944 * 10 9 7 27 27 H 0.97005 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47490 * 60.00177 * 9 7 2 29 29 H 1.09000 * 109.47089 * 299.99917 * 9 7 2 30 30 H 1.07991 * 119.87550 * 0.02562 * 11 10 9 31 31 H 1.07998 * 119.93997 * 179.97438 * 12 11 10 32 32 H 1.07997 * 120.06365 * 180.29732 * 13 12 11 33 33 H 1.08003 * 120.04747 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94971 * 180.29192 * 17 16 15 35 35 H 1.08000 * 120.05404 * 179.97438 * 25 20 18 36 36 H 1.08002 * 120.05698 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0137 -2.6149 0.0013 11 6 4.2438 -3.2647 1.2009 12 6 4.7053 -4.5685 1.2095 13 6 4.9333 -5.2305 0.0199 14 6 4.7083 -4.5791 -1.1910 15 6 4.9570 -5.2838 -2.4730 16 6 4.7209 -4.6356 -3.6839 17 6 4.9595 -5.2923 -4.8735 18 6 5.4218 -6.5986 -4.8654 19 9 5.6492 -7.2397 -6.0327 20 6 5.6520 -7.2487 -3.6641 21 6 6.1553 -8.6692 -3.6616 22 9 6.3107 -9.1066 -2.3419 23 9 5.2346 -9.4913 -4.3201 24 9 7.3879 -8.7283 -4.3207 25 6 5.4221 -6.5972 -2.4696 26 6 4.2428 -3.2656 -1.1938 27 1 -0.4851 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8744 -0.6809 -0.8905 30 1 4.0624 -2.7520 2.1338 31 1 4.8837 -5.0709 2.1487 32 1 5.2891 -6.2502 0.0277 33 1 4.3560 -3.6191 -3.6911 34 1 4.7813 -4.7891 -5.8123 35 1 5.6015 -7.1049 -1.5333 36 1 4.0621 -2.7577 -2.1296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241095147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:07 Heat of formation + Delta-G solvation = -154.033061 kcal Electronic energy + Delta-G solvation = -25986.925989 eV Core-core repulsion = 21513.999482 eV Total energy + Delta-G solvation = -4472.926507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.45397 -49.30485 -47.90064 -47.85333 -39.99441 -38.32380 -33.82176 -32.83089 -32.22607 -31.32197 -29.01533 -27.64187 -26.32744 -23.84424 -23.27203 -22.60132 -21.19715 -20.13835 -18.74875 -18.66490 -18.64353 -17.55379 -16.87142 -16.54327 -16.33408 -16.00367 -15.24420 -14.83059 -14.71437 -14.57881 -14.34847 -14.29695 -14.29161 -14.01809 -13.95374 -13.93211 -13.48182 -13.28806 -13.11203 -12.78847 -12.38956 -12.24114 -12.05735 -11.83952 -11.54838 -11.20103 -10.85459 -10.49201 -10.22508 -10.05950 -9.73751 -9.56716 -9.43952 -8.67607 -8.22228 -7.85414 -6.16345 -4.16666 0.33755 0.64012 1.82421 1.87845 2.33523 3.16028 3.21213 3.30188 3.31548 3.36706 3.60204 3.81866 4.12173 4.29087 4.32849 4.35410 4.47956 4.76050 4.83410 5.07765 5.16244 5.24575 5.34244 5.49507 5.55515 5.63662 5.70253 5.84334 5.88284 6.14699 6.22513 6.40395 6.43348 6.75707 6.79807 6.88436 6.89226 7.37462 7.40271 7.59228 8.38919 8.88344 9.43244 10.96367 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002871 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.017392 B = 9749.253537 C =10534.224715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.027 4.027 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.129 4.129 14 C -0.066 4.066 15 C -0.031 4.031 16 C -0.054 4.054 17 C -0.146 4.146 18 C 0.136 3.864 19 F -0.128 7.128 20 C -0.219 4.219 21 C 0.514 3.486 22 F -0.173 7.173 23 F -0.173 7.173 24 F -0.174 7.174 25 C -0.047 4.047 26 C -0.103 4.103 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 -13.926 -6.793 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.027 4.027 11 C -0.126 4.126 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.066 4.066 15 C -0.031 4.031 16 C -0.072 4.072 17 C -0.165 4.165 18 C 0.117 3.883 19 F -0.106 7.106 20 C -0.221 4.221 21 C 0.460 3.540 22 F -0.155 7.155 23 F -0.154 7.154 24 F -0.155 7.155 25 C -0.064 4.064 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.378 -13.879 -6.842 20.455 hybrid contribution 0.319 0.488 -0.225 0.625 sum 13.697 -13.391 -7.066 20.417 Atomic orbital electron populations 1.69893 1.06281 1.27103 1.50260 1.24999 0.94734 0.99039 0.94382 0.86816 0.80406 0.83671 0.78690 1.20114 1.21186 1.18904 1.20904 0.88106 0.94720 1.51749 0.90770 1.18836 0.97590 0.88376 0.97572 1.20243 0.92469 0.98097 0.91907 1.21233 0.98433 0.94533 0.98436 1.20993 1.00268 0.95069 0.97426 1.20961 1.02554 0.99303 0.91860 1.18485 1.02947 0.94334 0.90813 1.18887 0.98079 0.92699 0.93482 1.21511 0.94495 1.00797 0.90386 1.21125 1.02254 0.92566 1.00555 1.17311 0.99552 0.91523 0.79945 1.91559 1.91908 1.81450 1.45681 1.19916 1.12845 0.94159 0.95173 1.18023 0.75655 0.86539 0.73772 1.93177 1.95570 1.90943 1.35787 1.93236 1.66269 1.74835 1.81101 1.93231 1.44288 1.96898 1.81098 1.20989 0.94866 0.93969 0.96625 1.21101 0.99089 0.93177 0.98683 0.92490 0.95208 0.95733 0.85968 0.86344 0.86577 0.83134 0.83246 0.83216 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.52 -13.89 9.65 -34.44 -0.33 -14.22 16 8 H 0.07 2.20 7.98 -52.49 -0.42 1.78 16 9 C 0.01 0.30 4.17 -29.04 -0.12 0.17 16 10 C -0.03 -0.52 5.06 -104.67 -0.53 -1.05 16 11 C -0.11 -1.85 9.69 -39.52 -0.38 -2.23 16 12 C -0.12 -1.71 10.03 -39.63 -0.40 -2.11 16 13 C -0.13 -1.76 9.43 -39.25 -0.37 -2.13 16 14 C -0.07 -0.96 5.88 -104.90 -0.62 -1.57 16 15 C -0.03 -0.39 5.88 -104.89 -0.62 -1.01 16 16 C -0.05 -0.60 9.42 -39.27 -0.37 -0.97 16 17 C -0.15 -1.48 10.01 -39.56 -0.40 -1.88 16 18 C 0.14 1.55 7.13 -39.35 -0.28 1.27 16 19 F -0.13 -1.51 16.44 2.25 0.04 -1.47 16 20 C -0.22 -2.52 5.37 -104.61 -0.56 -3.08 16 21 C 0.51 5.87 3.02 36.01 0.11 5.98 16 22 F -0.17 -1.89 15.97 2.25 0.04 -1.85 16 23 F -0.17 -2.08 17.05 2.25 0.04 -2.04 16 24 F -0.17 -2.05 17.05 2.25 0.04 -2.01 16 25 C -0.05 -0.53 8.81 -39.26 -0.35 -0.87 16 26 C -0.10 -1.72 9.08 -39.26 -0.36 -2.08 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.66 7.14 -51.93 -0.37 0.28 16 29 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.26 6.21 -52.49 -0.33 0.93 16 33 H 0.15 1.53 6.21 -52.48 -0.33 1.20 16 34 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.48 5.30 -52.49 -0.28 1.20 16 36 H 0.12 1.91 6.21 -52.49 -0.33 1.59 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -29.31 325.82 -7.37 -36.68 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.87 Total: -0.24 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -5.67 Total: -23.91 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.15 Total: -7.38 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.31 -7.37 -36.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.352 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds