Wall clock time and date at job start Tue Mar 31 2020 14:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48498 * 109.46942 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47353 * 30.00047 * 3 2 1 6 6 H 1.48505 * 109.47083 * 150.00275 * 3 2 1 7 7 C 1.37882 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99465 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99922 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47099 * 179.97438 * 9 7 2 11 11 C 1.38350 * 119.93871 * 270.02501 * 10 9 7 12 12 C 1.38302 * 120.24429 * 180.02562 * 11 10 9 13 13 C 1.38042 * 120.12082 * 359.71462 * 12 11 10 14 14 C 1.39326 * 119.87470 * 0.54124 * 13 12 11 15 15 C 1.48386 * 120.11876 * 179.74157 * 14 13 12 16 16 C 1.39363 * 120.09438 * 179.44880 * 15 14 13 17 17 C 1.37957 * 119.90386 * 179.69533 * 16 15 14 18 18 C 1.38571 * 120.09238 * 0.58005 * 17 16 15 19 19 F 1.35104 * 119.90005 * 179.74589 * 18 17 16 20 20 C 1.38523 * 120.19238 * 359.71428 * 18 17 16 21 21 C 1.50701 * 119.95333 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47481 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47201 * 299.97973 * 21 20 18 24 24 F 1.39902 * 109.47151 * 59.97837 * 21 20 18 25 25 C 1.37992 * 120.09927 * 359.97438 * 20 18 17 26 26 C 1.37994 * 119.94277 * 89.99944 * 10 9 7 27 27 H 0.97005 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47490 * 60.00177 * 9 7 2 29 29 H 1.09000 * 109.47089 * 299.99917 * 9 7 2 30 30 H 1.07991 * 119.87550 * 0.02562 * 11 10 9 31 31 H 1.07998 * 119.93997 * 179.97438 * 12 11 10 32 32 H 1.07997 * 120.06365 * 180.29732 * 13 12 11 33 33 H 1.08003 * 120.04747 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94971 * 180.29192 * 17 16 15 35 35 H 1.08000 * 120.05404 * 179.97438 * 25 20 18 36 36 H 1.08002 * 120.05698 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0137 -2.6149 0.0013 11 6 4.2438 -3.2647 1.2009 12 6 4.7053 -4.5685 1.2095 13 6 4.9333 -5.2305 0.0199 14 6 4.7083 -4.5791 -1.1910 15 6 4.9570 -5.2838 -2.4730 16 6 4.7209 -4.6356 -3.6839 17 6 4.9595 -5.2923 -4.8735 18 6 5.4218 -6.5986 -4.8654 19 9 5.6492 -7.2397 -6.0327 20 6 5.6520 -7.2487 -3.6641 21 6 6.1553 -8.6692 -3.6616 22 9 6.3107 -9.1066 -2.3419 23 9 5.2346 -9.4913 -4.3201 24 9 7.3879 -8.7283 -4.3207 25 6 5.4221 -6.5972 -2.4696 26 6 4.2428 -3.2656 -1.1938 27 1 -0.4851 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8744 -0.6809 -0.8905 30 1 4.0624 -2.7520 2.1338 31 1 4.8837 -5.0709 2.1487 32 1 5.2891 -6.2502 0.0277 33 1 4.3560 -3.6191 -3.6911 34 1 4.7813 -4.7891 -5.8123 35 1 5.6015 -7.1049 -1.5333 36 1 4.0621 -2.7577 -2.1296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241095147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:06 Heat of formation + Delta-G solvation = -166.947349 kcal Electronic energy + Delta-G solvation = -25987.485995 eV Core-core repulsion = 21513.999482 eV Total energy + Delta-G solvation = -4473.486513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.34825 -50.20741 -48.78124 -48.76602 -41.00393 -39.43544 -35.51176 -34.01150 -33.49023 -32.62779 -30.21552 -29.14215 -27.25927 -25.10259 -24.49627 -23.84761 -22.26507 -21.40650 -19.64761 -19.60754 -19.54741 -18.95721 -18.47300 -17.58481 -17.37419 -16.90309 -16.44692 -16.11501 -15.76089 -15.72151 -15.61915 -15.21331 -15.18880 -15.12545 -14.91695 -14.85145 -14.71381 -14.42704 -14.34369 -14.02230 -13.74982 -13.47885 -13.38614 -13.16282 -12.86797 -12.48516 -12.31600 -11.99460 -11.80470 -11.66246 -11.42012 -10.77726 -10.69356 -10.47086 -9.51002 -8.99125 -8.28696 -6.33951 -0.61794 -0.23170 0.62011 0.74514 1.38021 1.40255 1.44640 1.51476 2.21474 2.36301 2.48060 2.72896 2.92777 3.05991 3.06190 3.24521 3.48232 3.52513 3.89307 3.93042 4.09655 4.13419 4.35761 4.38870 4.56472 4.63844 4.65977 4.73222 4.88663 4.98272 5.06089 5.13245 5.22598 5.30638 5.47971 5.58150 5.64149 5.66405 5.98542 6.13812 6.29074 6.73049 7.29871 8.87702 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002871 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.017392 B = 9749.253537 C =10534.224715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.019 3.981 10 C -0.062 4.062 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.124 4.124 14 C -0.061 4.061 15 C -0.047 4.047 16 C -0.055 4.055 17 C -0.138 4.138 18 C 0.131 3.869 19 F -0.131 7.131 20 C -0.225 4.225 21 C 0.516 3.484 22 F -0.169 7.169 23 F -0.178 7.178 24 F -0.177 7.177 25 C -0.039 4.039 26 C -0.117 4.117 27 H 0.267 0.733 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.602 -14.572 -7.206 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.168 1.168 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.018 4.018 10 C -0.062 4.062 11 C -0.146 4.146 12 C -0.132 4.132 13 C -0.142 4.142 14 C -0.061 4.061 15 C -0.047 4.047 16 C -0.073 4.073 17 C -0.157 4.157 18 C 0.112 3.888 19 F -0.109 7.109 20 C -0.227 4.227 21 C 0.462 3.538 22 F -0.150 7.150 23 F -0.159 7.159 24 F -0.158 7.158 25 C -0.057 4.057 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.137 0.863 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.192 0.808 35 H 0.183 0.817 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.483 -14.543 -7.256 22.447 hybrid contribution -0.334 0.505 -0.152 0.624 sum 15.149 -14.038 -7.407 21.942 Atomic orbital electron populations 1.70058 1.08358 1.28239 1.52322 1.25972 0.95542 1.03346 0.94030 0.85678 0.79527 0.78200 0.79410 1.18855 1.21204 1.16817 1.21158 0.90837 0.92933 1.50730 0.95338 1.18675 0.94222 0.91182 0.97730 1.20099 0.95275 0.97074 0.93748 1.21341 0.99605 0.96035 0.97663 1.21320 0.98743 0.93853 0.99249 1.21409 1.01009 1.00655 0.91124 1.18655 1.01620 0.93471 0.92330 1.18833 0.99647 0.93285 0.92961 1.21661 0.94032 1.01162 0.90414 1.21342 1.01039 0.92018 1.01262 1.17521 0.99500 0.91983 0.79837 1.91554 1.91932 1.81577 1.45866 1.19967 1.13186 0.94214 0.95367 1.17997 0.75451 0.86472 0.73857 1.93183 1.95534 1.90911 1.35410 1.93228 1.66450 1.74990 1.81254 1.93227 1.44447 1.96905 1.81205 1.21078 0.93990 0.93413 0.97223 1.21184 0.99820 0.94403 0.98098 0.92410 0.95089 0.94929 0.86299 0.83166 0.83160 0.82529 0.80751 0.81659 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 2 C 0.01 0.46 5.47 84.66 0.46 0.93 16 3 Si 0.95 42.23 27.47 68.60 1.88 44.11 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.52 -28.87 9.65 25.60 0.25 -28.62 16 8 H 0.03 1.79 7.98 -2.91 -0.02 1.76 16 9 C 0.02 0.85 4.17 29.10 0.12 0.98 16 10 C -0.06 -2.38 5.06 -19.90 -0.10 -2.48 16 11 C -0.13 -4.35 9.69 22.31 0.22 -4.13 16 12 C -0.11 -3.02 10.03 22.24 0.22 -2.79 16 13 C -0.12 -3.05 9.43 22.49 0.21 -2.83 16 14 C -0.06 -1.66 5.88 -20.04 -0.12 -1.78 16 15 C -0.05 -1.07 5.88 -20.04 -0.12 -1.19 16 16 C -0.05 -1.12 9.42 22.47 0.21 -0.91 16 17 C -0.14 -2.47 10.01 22.28 0.22 -2.25 16 18 C 0.13 2.71 7.13 22.42 0.16 2.87 16 19 F -0.13 -2.85 16.44 44.97 0.74 -2.11 16 20 C -0.23 -4.68 5.37 -19.85 -0.11 -4.79 16 21 C 0.52 10.76 3.02 71.24 0.22 10.98 16 22 F -0.17 -3.27 15.97 44.97 0.72 -2.55 16 23 F -0.18 -3.99 17.05 44.97 0.77 -3.22 16 24 F -0.18 -3.84 17.05 44.97 0.77 -3.07 16 25 C -0.04 -0.79 8.81 22.48 0.20 -0.59 16 26 C -0.12 -3.89 9.08 22.48 0.20 -3.69 16 27 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 28 H 0.03 1.36 7.14 -2.38 -0.02 1.34 16 29 H 0.03 1.38 7.51 -2.39 -0.02 1.36 16 30 H 0.12 3.95 8.06 -2.92 -0.02 3.92 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 2.61 6.21 -2.91 -0.02 2.59 16 33 H 0.16 2.96 6.21 -2.91 -0.02 2.95 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.68 5.30 -2.91 -0.02 2.66 16 36 H 0.13 3.94 6.21 -2.91 -0.02 3.92 16 Total: -1.00 -65.27 325.82 8.52 -56.74 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.10 Total: 8.30 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 2.25 Total: -40.31 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 2.99 Total: -10.97 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -65.27 8.52 -56.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.203 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds