Wall clock time and date at job start Tue Mar 31 2020 14:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47117 * 240.00313 * 3 2 1 5 5 H 1.48501 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46713 * 120.00411 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.38325 * 119.87545 * 89.99926 * 10 9 7 12 12 C 1.38017 * 120.12186 * 179.72078 * 11 10 9 13 13 C 1.39347 * 119.87628 * 0.27929 * 12 11 10 14 14 C 1.48369 * 120.12475 * 179.97438 * 13 12 11 15 15 C 1.39332 * 120.13788 * 129.99583 * 14 13 12 16 16 C 1.38000 * 119.90382 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.91204 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47311 * 89.99842 * 17 16 15 19 19 F 1.39899 * 109.46950 * 210.00428 * 17 16 15 20 20 F 1.39905 * 109.47061 * 329.99836 * 17 16 15 21 21 C 1.38353 * 120.17240 * 0.02562 * 16 15 14 22 22 C 1.38249 * 120.27340 * 359.97438 * 21 16 15 23 23 C 1.38288 * 120.09747 * 359.72138 * 22 21 16 24 24 F 1.35091 * 120.09000 * 180.27504 * 23 22 21 25 25 C 1.39352 * 119.75798 * 359.97438 * 13 12 11 26 26 C 1.38018 * 119.87230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00262 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47377 * 59.99699 * 9 7 2 29 29 H 1.09002 * 109.46945 * 300.00371 * 9 7 2 30 30 H 1.08002 * 119.94233 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.06232 * 180.25523 * 12 11 10 32 32 H 1.08000 * 120.04564 * 0.03015 * 15 14 13 33 33 H 1.08005 * 119.86363 * 179.97438 * 21 16 15 34 34 H 1.08001 * 119.95438 * 180.02562 * 22 21 16 35 35 H 1.07993 * 120.06538 * 179.97438 * 25 13 12 36 36 H 1.08001 * 119.93937 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6780 -4.1683 1.1989 12 6 3.5705 -5.2211 1.2048 13 6 4.0249 -5.7526 -0.0004 14 6 4.9848 -6.8840 -0.0005 15 6 4.7347 -8.0135 -0.7770 16 6 5.6305 -9.0633 -0.7730 17 6 5.3599 -10.2853 -1.6124 18 9 5.9244 -10.1141 -2.8809 19 9 5.9254 -11.4076 -0.9978 20 9 3.9786 -10.4685 -1.7375 21 6 6.7757 -8.9972 0.0004 22 6 7.0310 -7.8799 0.7736 23 6 6.1442 -6.8189 0.7732 24 9 6.3966 -5.7249 1.5245 25 6 3.5746 -5.2177 -1.2058 26 6 2.6813 -4.1656 -1.1999 27 1 -0.4850 0.8400 0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.3249 -3.7558 2.1325 31 1 3.9163 -5.6319 2.1419 32 1 3.8411 -8.0673 -1.3812 33 1 7.4732 -9.8218 0.0001 34 1 7.9269 -7.8336 1.3751 35 1 3.9238 -5.6255 -2.1428 36 1 2.3312 -3.7504 -2.1334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241098421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:09 Heat of formation + Delta-G solvation = -160.421240 kcal Electronic energy + Delta-G solvation = -25775.283166 eV Core-core repulsion = 21302.079647 eV Total energy + Delta-G solvation = -4473.203519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.43809 -49.12840 -47.95617 -47.89258 -39.79597 -38.38488 -33.99807 -32.52706 -31.91508 -30.46103 -30.19127 -26.94116 -26.12002 -24.06517 -23.02032 -22.10168 -21.76466 -20.29215 -18.77126 -18.70661 -18.57430 -17.77907 -16.55393 -16.38789 -15.95527 -15.85101 -15.02529 -14.83879 -14.77221 -14.51000 -14.42583 -14.30803 -14.25392 -14.05360 -14.03334 -13.94402 -13.54618 -12.99476 -12.89559 -12.86264 -12.59613 -12.06660 -12.02050 -11.54341 -11.34753 -11.14472 -10.80833 -10.59341 -10.35376 -9.74987 -9.58345 -9.45234 -9.22935 -8.48167 -8.44023 -7.78136 -6.09605 -4.14120 0.39789 0.66361 1.87021 1.92706 2.34900 2.98190 3.29176 3.33385 3.36624 3.38823 3.69649 3.85998 4.12214 4.24754 4.35438 4.38220 4.46981 4.65826 4.86716 5.23738 5.25439 5.31835 5.39976 5.43915 5.59784 5.68518 5.73987 5.86513 6.06687 6.07618 6.30647 6.48967 6.55441 6.87116 7.03424 7.06366 7.41083 7.56971 7.74167 7.85723 8.24194 8.90823 9.50143 11.00194 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002662 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.893846 B =10517.122653 C =11148.565595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.045 3.955 10 C -0.017 4.017 11 C -0.124 4.124 12 C -0.093 4.093 13 C -0.104 4.104 14 C -0.053 4.053 15 C -0.037 4.037 16 C -0.196 4.196 17 C 0.512 3.488 18 F -0.176 7.176 19 F -0.178 7.178 20 F -0.175 7.175 21 C -0.051 4.051 22 C -0.154 4.154 23 C 0.138 3.862 24 F -0.121 7.121 25 C -0.097 4.097 26 C -0.125 4.125 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -20.905 -0.744 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.008 3.992 10 C -0.017 4.017 11 C -0.142 4.142 12 C -0.111 4.111 13 C -0.104 4.104 14 C -0.054 4.054 15 C -0.055 4.055 16 C -0.198 4.198 17 C 0.458 3.542 18 F -0.157 7.157 19 F -0.159 7.159 20 F -0.156 7.156 21 C -0.070 4.070 22 C -0.173 4.173 23 C 0.119 3.881 24 F -0.099 7.099 25 C -0.115 4.115 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.619 -20.771 -0.738 24.314 hybrid contribution 0.513 0.955 0.009 1.084 sum 13.132 -19.816 -0.728 23.783 Atomic orbital electron populations 1.69939 1.06047 1.27059 1.50160 1.25007 0.94895 0.99292 0.95037 0.86579 0.79536 0.82692 0.78797 1.20114 1.21182 1.20114 1.20994 0.93030 0.89751 1.51509 0.92459 1.18416 0.92589 0.89581 0.98615 1.20867 0.94819 0.94118 0.91864 1.21044 0.98267 0.96223 0.98668 1.21029 0.97391 0.96525 0.96134 1.18222 1.00398 0.97334 0.94435 1.18868 0.93959 0.95250 0.97355 1.20937 0.98145 0.90128 0.96259 1.19893 1.00045 0.95652 1.04167 1.18187 0.74256 0.83307 0.78434 1.93236 1.84969 1.95448 1.42052 1.93187 1.84986 1.54959 1.82764 1.93214 1.30554 1.95780 1.96051 1.20735 0.95102 0.97855 0.93263 1.21049 1.00860 0.92829 1.02532 1.17960 0.94199 0.84029 0.91941 1.91571 1.93722 1.51442 1.73189 1.21036 0.97491 0.96947 0.96050 1.21048 0.98181 0.96422 0.98663 0.92693 0.95096 0.95120 0.85909 0.86907 0.83514 0.83851 0.83462 0.86688 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.15 9.09 -34.44 -0.31 -14.46 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.12 5.10 -29.04 -0.15 0.97 16 10 C -0.02 -0.35 5.07 -104.56 -0.53 -0.88 16 11 C -0.12 -2.34 9.68 -39.63 -0.38 -2.72 16 12 C -0.09 -1.52 8.87 -39.25 -0.35 -1.87 16 13 C -0.10 -1.60 5.31 -104.90 -0.56 -2.15 16 14 C -0.05 -0.68 5.48 -104.83 -0.57 -1.25 16 15 C -0.04 -0.40 8.86 -39.26 -0.35 -0.75 16 16 C -0.20 -1.89 5.45 -104.67 -0.57 -2.46 16 17 C 0.51 4.85 3.36 36.01 0.12 4.97 16 18 F -0.18 -1.76 17.30 2.25 0.04 -1.72 16 19 F -0.18 -1.62 16.45 2.25 0.04 -1.58 16 20 F -0.17 -1.79 16.45 2.25 0.04 -1.75 16 21 C -0.05 -0.42 9.39 -39.53 -0.37 -0.79 16 22 C -0.15 -1.36 10.02 -39.56 -0.40 -1.76 16 23 C 0.14 1.64 7.17 -39.08 -0.28 1.36 16 24 F -0.12 -1.64 15.92 2.25 0.04 -1.60 16 25 C -0.10 -1.54 9.51 -39.25 -0.37 -1.91 16 26 C -0.13 -2.32 9.68 -39.63 -0.38 -2.70 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.11 1.63 7.81 -52.49 -0.41 1.22 16 32 H 0.15 1.48 7.58 -52.49 -0.40 1.09 16 33 H 0.14 0.82 7.59 -52.48 -0.40 0.43 16 34 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -29.15 335.19 -7.92 -37.06 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.28 Total: -1.64 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -5.55 Total: -24.84 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.15 Total: -6.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.15 -7.92 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.357 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds