Wall clock time and date at job start Tue Mar 31 2020 14:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47117 * 240.00313 * 3 2 1 5 5 H 1.48501 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46713 * 120.00411 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.38325 * 119.87545 * 89.99926 * 10 9 7 12 12 C 1.38017 * 120.12186 * 179.72078 * 11 10 9 13 13 C 1.39347 * 119.87628 * 0.27929 * 12 11 10 14 14 C 1.48369 * 120.12475 * 179.97438 * 13 12 11 15 15 C 1.39332 * 120.13788 * 129.99583 * 14 13 12 16 16 C 1.38000 * 119.90382 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.91204 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47311 * 89.99842 * 17 16 15 19 19 F 1.39899 * 109.46950 * 210.00428 * 17 16 15 20 20 F 1.39905 * 109.47061 * 329.99836 * 17 16 15 21 21 C 1.38353 * 120.17240 * 0.02562 * 16 15 14 22 22 C 1.38249 * 120.27340 * 359.97438 * 21 16 15 23 23 C 1.38288 * 120.09747 * 359.72138 * 22 21 16 24 24 F 1.35091 * 120.09000 * 180.27504 * 23 22 21 25 25 C 1.39352 * 119.75798 * 359.97438 * 13 12 11 26 26 C 1.38018 * 119.87230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00262 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47377 * 59.99699 * 9 7 2 29 29 H 1.09002 * 109.46945 * 300.00371 * 9 7 2 30 30 H 1.08002 * 119.94233 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.06232 * 180.25523 * 12 11 10 32 32 H 1.08000 * 120.04564 * 0.03015 * 15 14 13 33 33 H 1.08005 * 119.86363 * 179.97438 * 21 16 15 34 34 H 1.08001 * 119.95438 * 180.02562 * 22 21 16 35 35 H 1.07993 * 120.06538 * 179.97438 * 25 13 12 36 36 H 1.08001 * 119.93937 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6780 -4.1683 1.1989 12 6 3.5705 -5.2211 1.2048 13 6 4.0249 -5.7526 -0.0004 14 6 4.9848 -6.8840 -0.0005 15 6 4.7347 -8.0135 -0.7770 16 6 5.6305 -9.0633 -0.7730 17 6 5.3599 -10.2853 -1.6124 18 9 5.9244 -10.1141 -2.8809 19 9 5.9254 -11.4076 -0.9978 20 9 3.9786 -10.4685 -1.7375 21 6 6.7757 -8.9972 0.0004 22 6 7.0310 -7.8799 0.7736 23 6 6.1442 -6.8189 0.7732 24 9 6.3966 -5.7249 1.5245 25 6 3.5746 -5.2177 -1.2058 26 6 2.6813 -4.1656 -1.1999 27 1 -0.4850 0.8400 0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.3249 -3.7558 2.1325 31 1 3.9163 -5.6319 2.1419 32 1 3.8411 -8.0673 -1.3812 33 1 7.4732 -9.8218 0.0001 34 1 7.9269 -7.8336 1.3751 35 1 3.9238 -5.6255 -2.1428 36 1 2.3312 -3.7504 -2.1334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241098421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:09 Heat of formation + Delta-G solvation = -172.511332 kcal Electronic energy + Delta-G solvation = -25775.807432 eV Core-core repulsion = 21302.079647 eV Total energy + Delta-G solvation = -4473.727785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.17961 -50.06865 -48.69400 -48.64218 -40.80105 -39.59079 -35.69556 -34.10442 -32.70116 -31.83723 -31.61071 -28.58518 -26.89490 -25.60497 -24.14729 -23.41721 -22.85611 -21.65376 -19.51828 -19.45999 -19.42771 -18.62778 -18.53416 -17.44191 -17.18787 -16.81318 -16.60867 -15.98331 -15.84864 -15.61263 -15.49756 -15.18900 -15.06052 -14.82758 -14.79519 -14.71293 -14.54700 -14.44456 -14.32074 -14.18203 -13.76253 -13.49841 -13.28598 -13.13808 -12.71020 -12.60276 -12.51618 -12.21153 -11.87042 -11.60684 -11.42598 -10.62179 -10.41351 -10.16883 -9.82830 -9.18112 -8.22207 -6.35983 -0.44349 -0.16228 0.53133 0.59186 1.38923 1.41273 1.49692 1.59950 2.15893 2.38203 2.64049 2.87823 2.94745 3.08516 3.09444 3.38729 3.40997 3.63421 3.90936 3.99890 4.09127 4.14934 4.30423 4.43428 4.58649 4.64611 4.70421 4.86770 4.91775 4.95871 5.04697 5.11735 5.32074 5.34634 5.47356 5.53165 5.61142 5.72408 6.01889 6.04735 6.18857 6.76352 7.32734 8.86749 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002662 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.893846 B =10517.122653 C =11148.565595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.055 3.945 10 C -0.052 4.052 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.087 4.087 14 C -0.077 4.077 15 C -0.035 4.035 16 C -0.197 4.197 17 C 0.517 3.483 18 F -0.178 7.178 19 F -0.173 7.173 20 F -0.181 7.181 21 C -0.035 4.035 22 C -0.141 4.141 23 C 0.125 3.875 24 F -0.136 7.136 25 C -0.092 4.092 26 C -0.133 4.133 27 H 0.266 0.734 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.805 -22.819 -0.853 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.052 4.052 11 C -0.152 4.152 12 C -0.111 4.111 13 C -0.087 4.087 14 C -0.078 4.078 15 C -0.053 4.053 16 C -0.199 4.199 17 C 0.463 3.537 18 F -0.160 7.160 19 F -0.154 7.154 20 F -0.162 7.162 21 C -0.053 4.053 22 C -0.160 4.160 23 C 0.105 3.895 24 F -0.114 7.114 25 C -0.110 4.110 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.164 0.836 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.650 -22.700 -0.848 27.585 hybrid contribution -0.339 1.338 0.035 1.381 sum 15.311 -21.362 -0.813 26.295 Atomic orbital electron populations 1.70064 1.07636 1.28095 1.51073 1.25913 0.95768 1.03070 0.94494 0.85507 0.78326 0.78125 0.79172 1.19230 1.20465 1.19340 1.21332 0.93050 0.91231 1.51303 0.92818 1.18137 0.92926 0.91087 0.96085 1.20531 0.96216 0.94582 0.93845 1.21030 0.99173 0.97288 0.97707 1.21205 0.96489 0.95653 0.97707 1.18520 0.99345 0.97169 0.93682 1.18691 0.94326 0.95134 0.99664 1.20939 0.98636 0.89945 0.95791 1.19965 1.00328 0.95212 1.04350 1.18114 0.73973 0.83342 0.78282 1.93236 1.84967 1.95470 1.42288 1.93199 1.84860 1.54739 1.82645 1.93208 1.31109 1.95816 1.96072 1.21143 0.94579 0.98231 0.91304 1.21352 1.00929 0.91551 1.02132 1.18225 0.94752 0.84529 0.91954 1.91540 1.93837 1.52383 1.73635 1.21293 0.96288 0.95647 0.97762 1.21077 0.99001 0.97409 0.97643 0.92484 0.97509 0.97707 0.86492 0.84889 0.83140 0.80684 0.80495 0.83604 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.53 -30.43 9.09 25.60 0.23 -30.20 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.05 2.92 5.10 29.10 0.15 3.07 16 10 C -0.05 -2.27 5.07 -19.83 -0.10 -2.37 16 11 C -0.13 -5.24 9.68 22.24 0.22 -5.03 16 12 C -0.09 -3.00 8.87 22.48 0.20 -2.80 16 13 C -0.09 -2.57 5.31 -20.04 -0.11 -2.68 16 14 C -0.08 -1.79 5.48 -20.00 -0.11 -1.90 16 15 C -0.04 -0.67 8.86 22.48 0.20 -0.47 16 16 C -0.20 -3.10 5.45 -19.89 -0.11 -3.21 16 17 C 0.52 8.22 3.36 71.24 0.24 8.46 16 18 F -0.18 -3.06 17.30 44.97 0.78 -2.28 16 19 F -0.17 -2.56 16.45 44.97 0.74 -1.82 16 20 F -0.18 -3.30 16.45 44.97 0.74 -2.56 16 21 C -0.03 -0.41 9.39 22.30 0.21 -0.20 16 22 C -0.14 -1.90 10.02 22.28 0.22 -1.67 16 23 C 0.12 2.61 7.17 22.60 0.16 2.77 16 24 F -0.14 -3.40 15.92 44.97 0.72 -2.69 16 25 C -0.09 -2.83 9.51 22.49 0.21 -2.62 16 26 C -0.13 -5.07 9.68 22.24 0.22 -4.86 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 28 H 0.01 0.37 8.09 -2.38 -0.02 0.36 16 29 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 30 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.13 3.71 7.81 -2.91 -0.02 3.69 16 32 H 0.15 2.70 7.58 -2.91 -0.02 2.68 16 33 H 0.18 1.01 7.59 -2.91 -0.02 0.99 16 34 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.15 3.52 8.04 -2.91 -0.02 3.50 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -65.31 335.19 8.71 -56.60 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.13 Total: 4.99 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 2.30 Total: -42.91 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.64 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.97 Total: -9.35 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.31 8.71 -56.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.914 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds