Wall clock time and date at job start Tue Mar 31 2020 14:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48504 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47223 * 299.99410 * 3 2 1 6 6 H 1.48495 * 109.47400 * 59.99660 * 3 2 1 7 7 C 1.37878 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93685 * 270.25512 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25973 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39330 * 120.12952 * 309.72587 * 15 14 13 17 17 C 1.38011 * 119.89441 * 179.78696 * 16 15 14 18 18 C 1.50698 * 119.90696 * 180.22909 * 17 16 15 19 19 F 1.39903 * 109.47166 * 180.23235 * 18 17 16 20 20 F 1.39899 * 109.47744 * 300.23477 * 18 17 16 21 21 F 1.39903 * 109.47233 * 60.23630 * 18 17 16 22 22 C 1.38351 * 120.17514 * 0.46769 * 17 16 15 23 23 C 1.38252 * 120.27386 * 359.78411 * 22 17 16 24 24 C 1.38277 * 120.09323 * 359.97438 * 23 22 17 25 25 F 1.35100 * 120.08816 * 180.02562 * 24 23 22 26 26 C 1.37996 * 119.93660 * 89.99417 * 10 9 7 27 27 H 0.97002 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47342 * 59.99892 * 9 7 2 29 29 H 1.08994 * 109.46765 * 299.99136 * 9 7 2 30 30 H 1.08003 * 119.88208 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 33 33 H 1.07994 * 120.05657 * 0.02562 * 16 15 14 34 34 H 1.08007 * 119.85987 * 179.76424 * 22 17 16 35 35 H 1.07995 * 119.95395 * 179.97438 * 23 22 17 36 36 H 1.07993 * 120.06353 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6829 -4.1660 -1.1983 12 6 3.5774 -5.2207 -1.2057 13 6 4.0318 -5.7521 -0.0155 14 6 3.5834 -5.2275 1.1948 15 6 4.0687 -5.7940 2.4774 16 6 4.0259 -7.1695 2.6950 17 6 4.4826 -7.6917 3.8881 18 6 4.4413 -9.1799 4.1217 19 9 4.9479 -9.4665 5.3939 20 9 3.1193 -9.6293 4.0342 21 9 5.2184 -9.8257 3.1540 22 6 4.9737 -6.8521 4.8720 23 6 5.0145 -5.4857 4.6656 24 6 4.5645 -4.9509 3.4725 25 9 4.6049 -3.6157 3.2708 26 6 2.6778 -4.1681 1.1964 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.3329 -3.7509 -2.1319 31 1 3.9247 -5.6264 -2.1445 32 1 4.7339 -6.5728 -0.0225 33 1 3.6396 -7.8265 1.9298 34 1 5.3263 -7.2660 5.8053 35 1 5.3985 -4.8351 5.4374 36 1 2.3273 -3.7573 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241098812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:18 Heat of formation + Delta-G solvation = -159.655834 kcal Electronic energy + Delta-G solvation = -26076.907954 eV Core-core repulsion = 21603.737625 eV Total energy + Delta-G solvation = -4473.170329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.40572 -48.97692 -47.93574 -47.84769 -39.74512 -38.35590 -33.81168 -32.68393 -31.85304 -31.14956 -29.16155 -27.08333 -26.05111 -23.92523 -23.25729 -22.60680 -21.27946 -20.14822 -18.72104 -18.66720 -18.34276 -17.65773 -16.47695 -16.36908 -16.02463 -15.71565 -15.15905 -14.76357 -14.73981 -14.54483 -14.47762 -14.30414 -14.19425 -14.01854 -13.99241 -13.80781 -13.49274 -13.09077 -12.80945 -12.59387 -12.50500 -12.08327 -11.83437 -11.57827 -11.33576 -11.15692 -10.82295 -10.54743 -10.38278 -9.65049 -9.60708 -9.41455 -9.23444 -8.46172 -8.20133 -7.90059 -6.07980 -4.11784 0.47182 0.72138 1.84007 1.98705 2.38841 3.04812 3.27508 3.35280 3.40632 3.43102 3.73658 3.95589 4.16480 4.27395 4.39929 4.43709 4.49286 4.71593 4.93847 5.26316 5.31926 5.35178 5.42540 5.48490 5.67872 5.74161 5.77165 5.88179 5.97041 6.16266 6.35037 6.48465 6.61676 6.88309 7.02582 7.07151 7.42911 7.57943 7.75231 7.87992 8.26705 8.93575 9.52438 11.02025 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003044 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.653926 B = 9195.132262 C = 9872.786368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.032 4.032 11 C -0.111 4.111 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.074 4.074 15 C -0.061 4.061 16 C -0.033 4.033 17 C -0.199 4.199 18 C 0.513 3.487 19 F -0.178 7.178 20 F -0.175 7.175 21 F -0.176 7.176 22 C -0.051 4.051 23 C -0.155 4.155 24 C 0.145 3.855 25 F -0.115 7.115 26 C -0.095 4.095 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -17.627 8.278 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.032 4.032 11 C -0.129 4.129 12 C -0.141 4.141 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.062 4.062 16 C -0.051 4.051 17 C -0.201 4.201 18 C 0.459 3.541 19 F -0.159 7.159 20 F -0.156 7.156 21 F -0.158 7.158 22 C -0.069 4.069 23 C -0.174 4.174 24 C 0.125 3.875 25 F -0.093 7.093 26 C -0.113 4.113 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.007 -17.494 8.276 21.787 hybrid contribution 0.450 0.985 0.028 1.083 sum 10.457 -16.509 8.304 21.233 Atomic orbital electron populations 1.69967 1.06031 1.26769 1.50477 1.25008 0.94886 0.99291 0.95114 0.86481 0.80191 0.83434 0.77653 1.19620 1.20908 1.20901 1.21080 0.93101 0.89759 1.51029 0.92366 1.18383 0.92519 0.89553 0.98529 1.20653 0.96073 0.94949 0.91552 1.21242 0.97305 0.95806 0.98515 1.20974 0.98461 0.97459 0.97233 1.20859 1.01257 1.00798 0.91563 1.18408 1.00060 0.98481 0.90449 1.18876 1.00554 0.92300 0.94427 1.20826 0.94841 0.94095 0.95339 1.19867 1.10409 0.91202 0.98608 1.18180 0.73872 0.88186 0.73875 1.93161 1.87364 1.94638 1.40764 1.93235 1.35702 1.90839 1.95854 1.93226 1.75242 1.83784 1.63501 1.20814 0.95502 0.92265 0.98317 1.21084 1.03633 0.95669 0.96995 1.17997 0.97366 0.78131 0.94019 1.91627 1.93376 1.29244 1.95080 1.21106 0.96739 0.94622 0.98826 0.92858 0.95122 0.95246 0.86074 0.86527 0.86807 0.83809 0.83600 0.83356 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.19 9.09 -34.44 -0.31 -14.50 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 10 C -0.03 -0.68 5.06 -104.67 -0.53 -1.21 16 11 C -0.11 -2.06 9.69 -39.52 -0.38 -2.44 16 12 C -0.12 -1.92 10.03 -39.63 -0.40 -2.32 16 13 C -0.13 -1.90 9.52 -39.25 -0.37 -2.27 16 14 C -0.07 -1.21 5.32 -104.90 -0.56 -1.77 16 15 C -0.06 -0.84 5.48 -104.84 -0.57 -1.41 16 16 C -0.03 -0.38 9.06 -39.26 -0.36 -0.73 16 17 C -0.20 -2.05 5.37 -104.66 -0.56 -2.61 16 18 C 0.51 5.06 3.31 36.00 0.12 5.18 16 19 F -0.18 -1.67 15.96 2.25 0.04 -1.63 16 20 F -0.18 -1.87 17.23 2.25 0.04 -1.83 16 21 F -0.18 -1.81 17.24 2.25 0.04 -1.77 16 22 C -0.05 -0.46 9.42 -39.53 -0.37 -0.84 16 23 C -0.16 -1.57 10.02 -39.56 -0.40 -1.97 16 24 C 0.14 1.95 7.16 -39.08 -0.28 1.67 16 25 F -0.12 -1.86 15.90 2.25 0.04 -1.82 16 26 C -0.09 -1.84 8.52 -39.25 -0.33 -2.17 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 33 H 0.14 1.48 8.04 -52.49 -0.42 1.06 16 34 H 0.15 0.97 7.14 -52.48 -0.37 0.59 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 2.35 7.79 -52.49 -0.41 1.94 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -29.59 335.50 -7.91 -37.51 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.28 Total: -1.71 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -5.56 Total: -24.82 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.15 Total: -7.05 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.59 -7.91 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.150 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds