Wall clock time and date at job start Tue Mar 31 2020 14:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48504 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47223 * 299.99410 * 3 2 1 6 6 H 1.48495 * 109.47400 * 59.99660 * 3 2 1 7 7 C 1.37878 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93685 * 270.25512 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25973 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39330 * 120.12952 * 309.72587 * 15 14 13 17 17 C 1.38011 * 119.89441 * 179.78696 * 16 15 14 18 18 C 1.50698 * 119.90696 * 180.22909 * 17 16 15 19 19 F 1.39903 * 109.47166 * 180.23235 * 18 17 16 20 20 F 1.39899 * 109.47744 * 300.23477 * 18 17 16 21 21 F 1.39903 * 109.47233 * 60.23630 * 18 17 16 22 22 C 1.38351 * 120.17514 * 0.46769 * 17 16 15 23 23 C 1.38252 * 120.27386 * 359.78411 * 22 17 16 24 24 C 1.38277 * 120.09323 * 359.97438 * 23 22 17 25 25 F 1.35100 * 120.08816 * 180.02562 * 24 23 22 26 26 C 1.37996 * 119.93660 * 89.99417 * 10 9 7 27 27 H 0.97002 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47342 * 59.99892 * 9 7 2 29 29 H 1.08994 * 109.46765 * 299.99136 * 9 7 2 30 30 H 1.08003 * 119.88208 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 33 33 H 1.07994 * 120.05657 * 0.02562 * 16 15 14 34 34 H 1.08007 * 119.85987 * 179.76424 * 22 17 16 35 35 H 1.07995 * 119.95395 * 179.97438 * 23 22 17 36 36 H 1.07993 * 120.06353 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6829 -4.1660 -1.1983 12 6 3.5774 -5.2207 -1.2057 13 6 4.0318 -5.7521 -0.0155 14 6 3.5834 -5.2275 1.1948 15 6 4.0687 -5.7940 2.4774 16 6 4.0259 -7.1695 2.6950 17 6 4.4826 -7.6917 3.8881 18 6 4.4413 -9.1799 4.1217 19 9 4.9479 -9.4665 5.3939 20 9 3.1193 -9.6293 4.0342 21 9 5.2184 -9.8257 3.1540 22 6 4.9737 -6.8521 4.8720 23 6 5.0145 -5.4857 4.6656 24 6 4.5645 -4.9509 3.4725 25 9 4.6049 -3.6157 3.2708 26 6 2.6778 -4.1681 1.1964 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.3329 -3.7509 -2.1319 31 1 3.9247 -5.6264 -2.1445 32 1 4.7339 -6.5728 -0.0225 33 1 3.6396 -7.8265 1.9298 34 1 5.3263 -7.2660 5.8053 35 1 5.3985 -4.8351 5.4374 36 1 2.3273 -3.7573 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241098812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:17 Heat of formation + Delta-G solvation = -172.469792 kcal Electronic energy + Delta-G solvation = -26077.463609 eV Core-core repulsion = 21603.737625 eV Total energy + Delta-G solvation = -4473.725984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.18020 -50.08623 -48.69421 -48.63879 -40.81071 -39.57878 -35.62565 -34.07603 -32.89911 -32.59911 -30.38179 -28.89761 -26.89656 -25.37622 -24.75637 -23.65463 -22.46373 -21.49065 -19.49649 -19.45472 -19.28735 -18.63594 -18.54042 -17.44134 -17.38323 -16.82847 -16.61943 -16.12986 -15.92534 -15.54306 -15.48218 -15.17381 -15.07345 -14.86150 -14.79255 -14.67710 -14.58308 -14.46962 -14.26091 -14.15146 -13.74639 -13.36616 -13.28425 -12.96729 -12.86212 -12.67866 -12.47343 -12.35208 -11.82753 -11.58584 -11.41589 -10.64404 -10.50809 -10.19440 -9.59128 -9.29467 -8.23674 -6.36767 -0.46571 -0.18292 0.57215 0.58989 1.36874 1.37469 1.51161 1.58886 2.14117 2.37313 2.62990 2.89490 2.94539 3.07226 3.09857 3.38607 3.39804 3.61606 3.89430 4.03520 4.10410 4.18094 4.32740 4.41441 4.56137 4.67144 4.69935 4.84833 4.89959 4.92820 5.04374 5.17274 5.30759 5.32886 5.48501 5.55664 5.61042 5.71948 6.01229 6.06661 6.19702 6.75503 7.31875 8.86113 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003044 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.653926 B = 9195.132262 C = 9872.786368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.057 3.943 10 C -0.064 4.064 11 C -0.127 4.127 12 C -0.110 4.110 13 C -0.116 4.116 14 C -0.066 4.066 15 C -0.083 4.083 16 C -0.028 4.028 17 C -0.198 4.198 18 C 0.520 3.480 19 F -0.172 7.172 20 F -0.180 7.180 21 F -0.177 7.177 22 C -0.035 4.035 23 C -0.145 4.145 24 C 0.118 3.882 25 F -0.140 7.140 26 C -0.114 4.114 27 H 0.266 0.734 28 H 0.007 0.993 29 H -0.001 1.001 30 H 0.119 0.881 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.745 -19.509 9.064 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.064 4.064 11 C -0.145 4.145 12 C -0.127 4.127 13 C -0.134 4.134 14 C -0.066 4.066 15 C -0.084 4.084 16 C -0.046 4.046 17 C -0.199 4.199 18 C 0.466 3.534 19 F -0.153 7.153 20 F -0.161 7.161 21 F -0.158 7.158 22 C -0.052 4.052 23 C -0.163 4.163 24 C 0.099 3.901 25 F -0.118 7.118 26 C -0.132 4.132 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.017 0.983 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.196 0.804 35 H 0.192 0.808 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.595 -19.390 9.062 24.834 hybrid contribution -0.316 1.409 -0.125 1.450 sum 12.279 -17.981 8.937 23.536 Atomic orbital electron populations 1.70084 1.07607 1.27932 1.51258 1.25920 0.95792 1.03086 0.94525 0.85399 0.78863 0.78740 0.78096 1.19096 1.19825 1.20135 1.21368 0.92950 0.91254 1.50995 0.93008 1.18102 0.92891 0.91219 0.95824 1.20321 0.97213 0.95198 0.93677 1.21289 0.98665 0.97288 0.97252 1.21349 0.96478 0.95603 0.99315 1.21342 1.00590 1.00920 0.90526 1.18614 0.98364 0.96950 0.92677 1.18786 1.02511 0.93368 0.93756 1.20888 0.94419 0.93034 0.96275 1.19984 1.09869 0.91697 0.98379 1.18024 0.73645 0.87719 0.74042 1.93176 1.87244 1.94566 1.40348 1.93234 1.36150 1.90858 1.95894 1.93230 1.75221 1.83764 1.63595 1.21200 0.93533 0.91528 0.98978 1.21357 1.02358 0.96501 0.96081 1.18400 0.99013 0.77191 0.95494 1.91565 1.93815 1.31085 1.95375 1.20966 0.98479 0.96485 0.97276 0.92502 0.97435 0.98257 0.86335 0.82573 0.82866 0.82572 0.80397 0.80840 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.53 -30.84 9.09 25.60 0.23 -30.61 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.06 3.10 5.10 29.10 0.15 3.25 16 10 C -0.06 -2.89 5.06 -19.90 -0.10 -2.99 16 11 C -0.13 -4.83 9.69 22.31 0.22 -4.61 16 12 C -0.11 -3.20 10.03 22.24 0.22 -2.97 16 13 C -0.12 -3.19 9.52 22.48 0.21 -2.98 16 14 C -0.07 -2.14 5.32 -20.04 -0.11 -2.24 16 15 C -0.08 -2.21 5.48 -20.00 -0.11 -2.32 16 16 C -0.03 -0.58 9.06 22.48 0.20 -0.38 16 17 C -0.20 -3.43 5.37 -19.89 -0.11 -3.54 16 18 C 0.52 8.58 3.31 71.24 0.24 8.82 16 19 F -0.17 -2.60 15.96 44.97 0.72 -1.88 16 20 F -0.18 -3.38 17.23 44.97 0.77 -2.60 16 21 F -0.18 -3.07 17.24 44.97 0.78 -2.29 16 22 C -0.03 -0.50 9.42 22.30 0.21 -0.29 16 23 C -0.14 -2.57 10.02 22.28 0.22 -2.35 16 24 C 0.12 3.11 7.16 22.59 0.16 3.27 16 25 F -0.14 -4.65 15.90 44.97 0.72 -3.93 16 26 C -0.11 -4.66 8.52 22.49 0.19 -4.47 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 29 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 30 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.15 3.04 8.05 -2.91 -0.02 3.02 16 33 H 0.16 2.75 8.04 -2.91 -0.02 2.73 16 34 H 0.18 1.48 7.14 -2.91 -0.02 1.46 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.10 4.30 7.79 -2.91 -0.02 4.28 16 Total: -1.00 -68.05 335.50 8.72 -59.33 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.13 Total: 4.29 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 2.30 Total: -43.66 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 2.98 Total: -10.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.05 8.72 -59.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.139 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds