Wall clock time and date at job start Tue Mar 31 2020 14:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48496 * 109.46937 * 269.99717 * 3 2 1 5 5 H 1.48504 * 109.47268 * 29.99780 * 3 2 1 6 6 H 1.48497 * 109.47176 * 149.99664 * 3 2 1 7 7 C 1.37883 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99612 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87341 * 269.98272 * 10 9 7 12 12 C 1.38023 * 120.11968 * 179.97438 * 11 10 9 13 13 C 1.39346 * 119.87370 * 0.02562 * 12 11 10 14 14 C 1.48382 * 120.11588 * 179.97438 * 13 12 11 15 15 C 1.39367 * 120.09805 * 58.44441 * 14 13 12 16 16 C 1.37947 * 119.90611 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.09617 * 359.97438 * 16 15 14 18 18 F 1.35098 * 119.90465 * 179.97438 * 17 16 15 19 19 C 1.38528 * 120.19192 * 0.02562 * 17 16 15 20 20 C 1.37999 * 120.09255 * 359.73111 * 19 17 16 21 21 C 1.50706 * 120.04606 * 180.29484 * 20 19 17 22 22 F 1.39901 * 109.47211 * 353.35872 * 21 20 19 23 23 F 1.39902 * 109.46878 * 113.36040 * 21 20 19 24 24 F 1.39895 * 109.46915 * 233.35712 * 21 20 19 25 25 C 1.39340 * 119.75890 * 0.02562 * 13 12 11 26 26 C 1.38017 * 119.87823 * 359.97438 * 25 13 12 27 27 H 0.96994 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47421 * 60.00144 * 9 7 2 29 29 H 1.09003 * 109.47211 * 299.99885 * 9 7 2 30 30 H 1.08001 * 119.94335 * 359.97438 * 11 10 9 31 31 H 1.07992 * 120.06401 * 180.29194 * 12 11 10 32 32 H 1.08002 * 120.04320 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.95211 * 179.97438 * 16 15 14 34 34 H 1.07996 * 119.95283 * 179.97438 * 19 17 16 35 35 H 1.08003 * 120.05987 * 179.97438 * 25 13 12 36 36 H 1.08002 * 119.94057 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.2436 -3.2645 1.2003 12 6 4.7033 -4.5659 1.2062 13 6 4.9365 -5.2250 0.0008 14 6 5.4312 -6.6239 0.0008 15 6 4.6955 -7.6255 0.6316 16 6 5.1589 -8.9248 0.6287 17 6 6.3538 -9.2350 -0.0007 18 9 6.8042 -10.5086 -0.0007 19 6 7.0883 -8.2427 -0.6289 20 6 6.6296 -6.9411 -0.6352 21 6 7.4263 -5.8636 -1.3247 22 9 8.6520 -6.3886 -1.7483 23 9 6.7129 -5.3928 -2.4323 24 9 7.6535 -4.8093 -0.4338 25 6 4.7045 -4.5653 -1.2044 26 6 4.2449 -3.2639 -1.1984 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8912 29 1 3.8753 -0.6804 -0.8889 30 1 4.0629 -2.7525 2.1340 31 1 4.8777 -5.0739 2.1431 32 1 3.7639 -7.3846 1.1221 33 1 4.5895 -9.7014 1.1177 34 1 8.0193 -8.4887 -1.1179 35 1 4.8841 -5.0713 -2.1415 36 1 4.0643 -2.7517 -2.1320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:01 Heat of formation + Delta-G solvation = -145.710974 kcal Electronic energy + Delta-G solvation = -26675.387875 eV Core-core repulsion = 22202.822241 eV Total energy + Delta-G solvation = -4472.565634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.27279 -49.26140 -47.83252 -47.64847 -39.93644 -38.31293 -33.86707 -32.49379 -32.22058 -30.48283 -30.25222 -27.41688 -26.17154 -23.76753 -22.92900 -22.02096 -21.84169 -20.17849 -18.95971 -18.58663 -18.53079 -16.94423 -16.82885 -16.63155 -16.43168 -15.96494 -15.36398 -14.83680 -14.71549 -14.52547 -14.33907 -14.25467 -13.96371 -13.85516 -13.81928 -13.78628 -13.66311 -12.92283 -12.80998 -12.65056 -12.62814 -12.29189 -11.95315 -11.72005 -11.49775 -11.27875 -10.75310 -10.37790 -10.13228 -10.01391 -9.73690 -9.45859 -9.11219 -8.63502 -8.46488 -7.85267 -6.12594 -4.12415 0.40061 0.64963 1.79718 1.89450 2.48202 2.97707 3.25461 3.33586 3.35943 3.47417 3.77118 4.00521 4.21879 4.30229 4.36925 4.37052 4.45519 4.56711 4.88711 5.13367 5.18725 5.32621 5.40559 5.48160 5.51028 5.69692 5.76415 5.84219 6.01291 6.04948 6.30066 6.43021 6.46108 6.81839 6.85697 6.94288 6.95403 7.45429 7.48826 7.64024 8.42967 8.91900 9.47304 11.00161 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.003252 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.076298 B = 8609.092122 C = 9400.162267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.010 3.990 10 C -0.011 4.011 11 C -0.123 4.123 12 C -0.089 4.089 13 C -0.116 4.116 14 C 0.023 3.977 15 C -0.083 4.083 16 C -0.118 4.118 17 C 0.088 3.912 18 F -0.135 7.135 19 C -0.107 4.107 20 C -0.154 4.154 21 C 0.513 3.487 22 F -0.181 7.181 23 F -0.167 7.167 24 F -0.164 7.164 25 C -0.106 4.106 26 C -0.121 4.121 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.025 0.975 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.767 -17.397 -0.033 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.027 4.027 10 C -0.011 4.011 11 C -0.141 4.141 12 C -0.107 4.107 13 C -0.116 4.116 14 C 0.023 3.977 15 C -0.101 4.101 16 C -0.136 4.136 17 C 0.069 3.931 18 F -0.113 7.113 19 C -0.126 4.126 20 C -0.156 4.156 21 C 0.458 3.542 22 F -0.162 7.162 23 F -0.148 7.148 24 F -0.145 7.145 25 C -0.123 4.123 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.646 -17.292 -0.051 22.661 hybrid contribution 0.471 0.798 -0.150 0.938 sum 15.117 -16.494 -0.201 22.375 Atomic orbital electron populations 1.69893 1.06263 1.27063 1.50450 1.24995 0.94742 0.99040 0.94397 0.86809 0.80404 0.83631 0.78709 1.20111 1.21207 1.18893 1.20887 0.88048 0.94717 1.51588 0.90767 1.18880 0.97593 0.88589 0.97603 1.20454 0.90577 0.97837 0.92194 1.21001 1.00311 0.94365 0.98466 1.20965 0.98802 0.94938 0.96012 1.18406 1.07115 0.91453 0.94602 1.18690 0.91352 0.94116 0.93588 1.21218 1.00044 0.90600 0.98261 1.21342 0.94888 0.98159 0.99252 1.17466 0.94859 0.79131 1.01684 1.91527 1.88966 1.35889 1.94924 1.20820 1.01028 0.90892 0.99838 1.19858 0.97500 0.93207 1.05027 1.18052 0.77313 0.81561 0.77237 1.93157 1.46010 1.86415 1.90657 1.93176 1.77185 1.89406 1.55077 1.93266 1.94622 1.58910 1.67738 1.21560 0.98651 0.95202 0.96917 1.21015 1.00079 0.94302 0.98460 0.92528 0.95202 0.95643 0.85837 0.86555 0.83330 0.83647 0.83272 0.85248 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.51 -14.21 9.65 -34.44 -0.33 -14.54 16 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 9 C 0.01 0.24 4.17 -29.04 -0.12 0.12 16 10 C -0.01 -0.21 5.07 -104.56 -0.53 -0.74 16 11 C -0.12 -2.21 9.68 -39.63 -0.38 -2.59 16 12 C -0.09 -1.35 9.65 -39.25 -0.38 -1.73 16 13 C -0.12 -1.70 3.97 -104.90 -0.42 -2.12 16 14 C 0.02 0.28 5.35 -104.89 -0.56 -0.28 16 15 C -0.08 -0.82 9.65 -39.27 -0.38 -1.20 16 16 C -0.12 -1.01 10.01 -39.57 -0.40 -1.40 16 17 C 0.09 0.84 7.30 -39.35 -0.29 0.55 16 18 F -0.13 -1.31 17.26 2.25 0.04 -1.27 16 19 C -0.11 -1.06 9.40 -39.56 -0.37 -1.43 16 20 C -0.15 -1.79 5.40 -104.30 -0.56 -2.35 16 21 C 0.51 6.41 2.79 36.01 0.10 6.51 16 22 F -0.18 -2.08 16.00 2.25 0.04 -2.04 16 23 F -0.17 -2.20 13.37 2.25 0.03 -2.17 16 24 F -0.16 -2.33 15.93 2.25 0.04 -2.29 16 25 C -0.11 -1.69 7.74 -39.25 -0.30 -1.99 16 26 C -0.12 -2.22 9.68 -39.63 -0.38 -2.60 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.68 7.14 -51.92 -0.37 0.31 16 29 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.15 1.24 7.18 -52.49 -0.38 0.87 16 35 H 0.13 1.88 5.77 -52.48 -0.30 1.58 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -29.83 323.92 -7.42 -37.25 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.14 Total: -0.47 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -5.41 Total: -23.93 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.14 Total: -7.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.83 -7.42 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.459 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds