Wall clock time and date at job start Tue Mar 31 2020 14:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48496 * 109.46937 * 269.99717 * 3 2 1 5 5 H 1.48504 * 109.47268 * 29.99780 * 3 2 1 6 6 H 1.48497 * 109.47176 * 149.99664 * 3 2 1 7 7 C 1.37883 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99612 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87341 * 269.98272 * 10 9 7 12 12 C 1.38023 * 120.11968 * 179.97438 * 11 10 9 13 13 C 1.39346 * 119.87370 * 0.02562 * 12 11 10 14 14 C 1.48382 * 120.11588 * 179.97438 * 13 12 11 15 15 C 1.39367 * 120.09805 * 58.44441 * 14 13 12 16 16 C 1.37947 * 119.90611 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.09617 * 359.97438 * 16 15 14 18 18 F 1.35098 * 119.90465 * 179.97438 * 17 16 15 19 19 C 1.38528 * 120.19192 * 0.02562 * 17 16 15 20 20 C 1.37999 * 120.09255 * 359.73111 * 19 17 16 21 21 C 1.50706 * 120.04606 * 180.29484 * 20 19 17 22 22 F 1.39901 * 109.47211 * 353.35872 * 21 20 19 23 23 F 1.39902 * 109.46878 * 113.36040 * 21 20 19 24 24 F 1.39895 * 109.46915 * 233.35712 * 21 20 19 25 25 C 1.39340 * 119.75890 * 0.02562 * 13 12 11 26 26 C 1.38017 * 119.87823 * 359.97438 * 25 13 12 27 27 H 0.96994 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47421 * 60.00144 * 9 7 2 29 29 H 1.09003 * 109.47211 * 299.99885 * 9 7 2 30 30 H 1.08001 * 119.94335 * 359.97438 * 11 10 9 31 31 H 1.07992 * 120.06401 * 180.29194 * 12 11 10 32 32 H 1.08002 * 120.04320 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.95211 * 179.97438 * 16 15 14 34 34 H 1.07996 * 119.95283 * 179.97438 * 19 17 16 35 35 H 1.08003 * 120.05987 * 179.97438 * 25 13 12 36 36 H 1.08002 * 119.94057 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.2436 -3.2645 1.2003 12 6 4.7033 -4.5659 1.2062 13 6 4.9365 -5.2250 0.0008 14 6 5.4312 -6.6239 0.0008 15 6 4.6955 -7.6255 0.6316 16 6 5.1589 -8.9248 0.6287 17 6 6.3538 -9.2350 -0.0007 18 9 6.8042 -10.5086 -0.0007 19 6 7.0883 -8.2427 -0.6289 20 6 6.6296 -6.9411 -0.6352 21 6 7.4263 -5.8636 -1.3247 22 9 8.6520 -6.3886 -1.7483 23 9 6.7129 -5.3928 -2.4323 24 9 7.6535 -4.8093 -0.4338 25 6 4.7045 -4.5653 -1.2044 26 6 4.2449 -3.2639 -1.1984 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8912 29 1 3.8753 -0.6804 -0.8889 30 1 4.0629 -2.7525 2.1340 31 1 4.8777 -5.0739 2.1431 32 1 3.7639 -7.3846 1.1221 33 1 4.5895 -9.7014 1.1177 34 1 8.0193 -8.4887 -1.1179 35 1 4.8841 -5.0713 -2.1415 36 1 4.0643 -2.7517 -2.1320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241125811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:01 Heat of formation + Delta-G solvation = -159.320928 kcal Electronic energy + Delta-G solvation = -26675.978047 eV Core-core repulsion = 22202.822241 eV Total energy + Delta-G solvation = -4473.155806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.26116 -50.01165 -48.79880 -48.68106 -40.92616 -39.48579 -35.56143 -33.97064 -33.21174 -31.79724 -31.61245 -28.85986 -27.16910 -25.15898 -24.01640 -23.32682 -22.97107 -21.55371 -19.84157 -19.56588 -19.51683 -18.97415 -17.97535 -17.46240 -17.24089 -16.77682 -16.69995 -16.17362 -16.05211 -15.69282 -15.50655 -15.32903 -15.12910 -14.98629 -14.84759 -14.76396 -14.51871 -14.49122 -14.08628 -13.81730 -13.77493 -13.64918 -13.36863 -13.21944 -12.78359 -12.48673 -12.29574 -11.94037 -11.77841 -11.68939 -11.50973 -10.79214 -10.48813 -10.07171 -9.78366 -9.17686 -8.30338 -6.35353 -0.44445 -0.14012 0.53226 0.56549 1.36831 1.38073 1.49878 1.54766 2.17617 2.34886 2.56083 2.86041 2.89610 3.04121 3.19646 3.31772 3.40777 3.68698 3.87224 4.03752 4.12168 4.14266 4.25220 4.35948 4.59172 4.64639 4.69907 4.79379 4.93541 5.00927 5.02530 5.08604 5.17682 5.29752 5.50684 5.53812 5.55726 5.63069 5.96821 6.09853 6.26938 6.70784 7.28155 8.85989 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.003252 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.076298 B = 8609.092122 C = 9400.162267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.017 3.983 10 C -0.048 4.048 11 C -0.133 4.133 12 C -0.085 4.085 13 C -0.099 4.099 14 C 0.002 3.998 15 C -0.078 4.078 16 C -0.104 4.104 17 C 0.091 3.909 18 F -0.134 7.134 19 C -0.105 4.105 20 C -0.158 4.158 21 C 0.509 3.491 22 F -0.175 7.175 23 F -0.174 7.174 24 F -0.177 7.177 25 C -0.108 4.108 26 C -0.134 4.134 27 H 0.268 0.732 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.554 -19.171 0.640 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.556 4.556 8 H 0.049 0.951 9 C -0.020 4.020 10 C -0.048 4.048 11 C -0.151 4.151 12 C -0.102 4.102 13 C -0.099 4.099 14 C 0.001 3.999 15 C -0.096 4.096 16 C -0.122 4.122 17 C 0.072 3.928 18 F -0.112 7.112 19 C -0.124 4.124 20 C -0.160 4.160 21 C 0.455 3.545 22 F -0.157 7.157 23 F -0.155 7.155 24 F -0.158 7.158 25 C -0.126 4.126 26 C -0.153 4.153 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.455 -19.084 0.619 25.206 hybrid contribution -0.054 1.097 -0.372 1.160 sum 16.401 -17.986 0.247 24.343 Atomic orbital electron populations 1.70048 1.08241 1.28265 1.52256 1.25953 0.95582 1.03273 0.94000 0.85685 0.79569 0.78317 0.79293 1.19178 1.20808 1.16911 1.21124 0.90614 0.93073 1.50804 0.95129 1.18711 0.94477 0.91214 0.97624 1.20300 0.93731 0.96911 0.93890 1.21120 1.00665 0.95642 0.97700 1.21263 0.97482 0.93816 0.97665 1.18663 1.04651 0.92719 0.93834 1.18596 0.92389 0.93086 0.95799 1.21359 1.00180 0.90533 0.97514 1.21615 0.94330 0.98222 0.98021 1.17577 0.95023 0.78963 1.01279 1.91540 1.89003 1.35832 1.94861 1.20939 1.01569 0.90228 0.99665 1.19750 0.97417 0.93442 1.05356 1.18240 0.77665 0.81574 0.77000 1.93164 1.45689 1.86218 1.90589 1.93153 1.77371 1.89576 1.55437 1.93239 1.94738 1.59695 1.68146 1.21722 0.98204 0.94333 0.98331 1.21058 1.00908 0.95511 0.97775 0.92340 0.94852 0.95377 0.85644 0.83321 0.81940 0.80623 0.81946 0.83927 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 2 C 0.01 0.53 5.47 84.66 0.46 0.99 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.52 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 7 C -0.52 -29.75 9.65 25.60 0.25 -29.50 16 8 H 0.03 1.96 7.98 -2.91 -0.02 1.93 16 9 C 0.02 0.80 4.17 29.10 0.12 0.92 16 10 C -0.05 -1.99 5.07 -19.82 -0.10 -2.09 16 11 C -0.13 -4.76 9.68 22.24 0.22 -4.54 16 12 C -0.08 -2.43 9.65 22.49 0.22 -2.21 16 13 C -0.10 -2.76 3.97 -20.04 -0.08 -2.84 16 14 C 0.00 0.04 5.35 -20.04 -0.11 -0.07 16 15 C -0.08 -1.27 9.65 22.47 0.22 -1.05 16 16 C -0.10 -1.34 10.01 22.28 0.22 -1.11 16 17 C 0.09 1.40 7.30 22.42 0.16 1.57 16 18 F -0.13 -2.15 17.26 44.97 0.78 -1.37 16 19 C -0.11 -1.78 9.40 22.28 0.21 -1.57 16 20 C -0.16 -3.31 5.40 -19.66 -0.11 -3.41 16 21 C 0.51 12.03 2.79 71.24 0.20 12.23 16 22 F -0.18 -3.74 16.00 44.97 0.72 -3.02 16 23 F -0.17 -4.44 13.37 44.97 0.60 -3.83 16 24 F -0.18 -4.84 15.93 44.97 0.72 -4.12 16 25 C -0.11 -3.42 7.74 22.48 0.17 -3.25 16 26 C -0.13 -5.07 9.68 22.24 0.22 -4.85 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.03 1.53 7.14 -2.38 -0.02 1.51 16 29 H 0.03 1.29 7.51 -2.39 -0.02 1.27 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.16 2.25 7.18 -2.91 -0.02 2.23 16 35 H 0.14 4.06 5.77 -2.91 -0.02 4.04 16 36 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -66.67 323.92 8.35 -58.32 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.08 Total: 7.99 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.27 Total: -40.80 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 9 Polarization: -15.17 SS G_CDS: 2.81 Total: -12.35 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -66.67 8.35 -58.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.002 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds