Wall clock time and date at job start Tue Mar 31 2020 14:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47182 * 270.00140 * 3 2 1 5 5 H 1.48492 * 109.46902 * 30.00513 * 3 2 1 6 6 H 1.48501 * 109.47073 * 150.00296 * 3 2 1 7 7 C 1.37881 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.93940 * 269.97543 * 10 9 7 12 12 C 1.38306 * 120.24834 * 180.02562 * 11 10 9 13 13 C 1.38036 * 120.11618 * 359.97438 * 12 11 10 14 14 C 1.39315 * 119.87908 * 0.02562 * 13 12 11 15 15 C 1.48388 * 120.12025 * 180.02562 * 14 13 12 16 16 C 1.39372 * 120.09505 * 238.29619 * 15 14 13 17 17 C 1.37957 * 119.90073 * 179.69846 * 16 15 14 18 18 C 1.38572 * 120.09099 * 0.58023 * 17 16 15 19 19 F 1.35103 * 119.89726 * 179.69701 * 18 17 16 20 20 C 1.38530 * 120.19618 * 359.71910 * 18 17 16 21 21 C 1.37989 * 120.09552 * 359.97438 * 20 18 17 22 22 C 1.50699 * 120.04837 * 180.02562 * 21 20 18 23 23 F 1.39896 * 109.46828 * 353.35051 * 22 21 20 24 24 F 1.39895 * 109.47239 * 113.35406 * 22 21 20 25 25 F 1.39904 * 109.47062 * 233.35417 * 22 21 20 26 26 C 1.37994 * 119.93926 * 90.00204 * 10 9 7 27 27 H 0.96997 * 120.00344 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46761 * 59.99567 * 9 7 2 29 29 H 1.09001 * 109.46801 * 300.00331 * 9 7 2 30 30 H 1.08007 * 119.87746 * 0.04526 * 11 10 9 31 31 H 1.07994 * 119.94036 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.06041 * 180.27279 * 13 12 11 33 33 H 1.07998 * 120.04779 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94827 * 180.27546 * 17 16 15 35 35 H 1.07996 * 119.94867 * 180.02562 * 20 18 17 36 36 H 1.07997 * 120.06223 * 359.95077 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6778 -4.1691 -1.2012 12 6 3.5761 -5.2207 -1.2098 13 6 4.0317 -5.7522 -0.0201 14 6 3.5846 -5.2278 1.1906 15 6 4.0712 -5.7947 2.4727 16 6 3.1652 -6.3125 3.3965 17 6 3.6226 -6.8442 4.5845 18 6 4.9796 -6.8530 4.8650 19 9 5.4227 -7.3692 6.0323 20 6 5.8831 -6.3337 3.9522 21 6 5.4348 -5.8057 2.7588 22 6 6.4187 -5.2416 1.7664 23 9 7.6968 -5.2252 2.3348 24 9 6.4298 -6.0382 0.6164 25 9 6.0426 -3.9375 1.4267 26 6 2.6789 -4.1686 1.1934 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.3244 -3.7558 -2.1344 31 1 3.9224 -5.6261 -2.1490 32 1 4.7366 -6.5704 -0.0279 33 1 2.1071 -6.3015 3.1808 34 1 2.9216 -7.2497 5.2990 35 1 6.9398 -6.3430 4.1747 36 1 2.3293 -3.7581 2.1292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241126585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:09 Heat of formation + Delta-G solvation = -149.717257 kcal Electronic energy + Delta-G solvation = -26958.267212 eV Core-core repulsion = 22485.527852 eV Total energy + Delta-G solvation = -4472.739360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.16996 -49.18533 -47.74434 -47.52089 -39.85605 -38.21117 -33.68734 -32.48845 -32.20252 -31.14365 -28.91593 -27.08372 -26.21985 -23.58216 -23.42477 -22.40754 -21.34811 -20.12366 -18.83710 -18.49573 -18.41537 -16.63262 -16.55801 -16.36372 -16.25978 -15.88554 -15.70123 -14.72898 -14.64062 -14.53565 -14.35730 -14.12134 -13.97645 -13.73878 -13.70770 -13.67976 -13.56419 -12.80998 -12.71785 -12.53435 -12.35754 -12.23150 -11.70954 -11.43328 -11.31396 -11.05160 -10.81850 -10.53379 -10.38342 -9.67104 -9.64782 -9.48734 -9.09751 -8.45777 -8.22001 -7.88594 -6.07871 -4.11618 0.48535 0.73250 1.82050 2.01864 2.57944 3.06142 3.29100 3.35513 3.40481 3.56766 3.86215 4.08914 4.26162 4.39816 4.44089 4.45805 4.54247 4.65680 4.96816 5.21602 5.27130 5.41631 5.50107 5.55896 5.59509 5.78286 5.83323 5.95940 6.00028 6.18916 6.37164 6.47513 6.65135 6.89779 7.03566 7.08699 7.43320 7.59399 7.75484 7.88224 8.27219 8.93803 9.52797 11.02042 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003852 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.504584 B = 7268.085855 C = 7491.641673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.034 4.034 11 C -0.109 4.109 12 C -0.121 4.121 13 C -0.134 4.134 14 C -0.090 4.090 15 C 0.020 3.980 16 C -0.082 4.082 17 C -0.118 4.118 18 C 0.088 3.912 19 F -0.135 7.135 20 C -0.107 4.107 21 C -0.152 4.152 22 C 0.512 3.488 23 F -0.181 7.181 24 F -0.170 7.170 25 F -0.160 7.160 26 C -0.091 4.091 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -15.808 6.516 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.034 4.034 11 C -0.127 4.127 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.090 4.090 15 C 0.020 3.980 16 C -0.099 4.099 17 C -0.137 4.137 18 C 0.069 3.931 19 F -0.113 7.113 20 C -0.126 4.126 21 C -0.154 4.154 22 C 0.457 3.543 23 F -0.163 7.163 24 F -0.151 7.151 25 F -0.141 7.141 26 C -0.109 4.109 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.544 -15.686 6.538 19.491 hybrid contribution 0.761 1.025 0.068 1.279 sum 10.305 -14.661 6.606 19.100 Atomic orbital electron populations 1.69945 1.06031 1.26877 1.50444 1.24990 0.94859 0.99239 0.95088 0.86554 0.79922 0.83146 0.78250 1.20537 1.21136 1.19736 1.21057 0.93104 0.89796 1.51119 0.92403 1.18368 0.92486 0.89541 0.98486 1.20634 0.96168 0.95033 0.91596 1.21255 0.97200 0.95702 0.98501 1.20969 0.98288 0.97427 0.97272 1.21370 1.00758 1.01470 0.91620 1.18565 1.01006 0.98869 0.90587 1.18722 0.90633 0.94303 0.94390 1.21207 1.00597 0.96331 0.91804 1.21332 0.93874 1.00072 0.98395 1.17465 0.92455 1.00010 0.83151 1.91525 1.90031 1.84563 1.45213 1.20810 1.01103 0.98302 0.92412 1.19848 0.93551 1.06132 0.95822 1.18062 0.79220 0.76833 0.80157 1.93152 1.41979 1.96427 1.84729 1.93154 1.96092 1.73864 1.51979 1.93316 1.90925 1.37099 1.92733 1.21037 0.96309 0.94820 0.98782 0.92812 0.95173 0.95256 0.86160 0.86605 0.85530 0.83303 0.83636 0.83282 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 10 C -0.03 -0.71 5.06 -104.68 -0.53 -1.24 16 11 C -0.11 -2.02 9.69 -39.52 -0.38 -2.40 16 12 C -0.12 -1.94 10.03 -39.63 -0.40 -2.34 16 13 C -0.13 -2.08 7.76 -39.25 -0.30 -2.38 16 14 C -0.09 -1.44 3.96 -104.90 -0.42 -1.86 16 15 C 0.02 0.27 5.35 -104.89 -0.56 -0.29 16 16 C -0.08 -0.90 9.65 -39.26 -0.38 -1.28 16 17 C -0.12 -1.13 10.01 -39.56 -0.40 -1.53 16 18 C 0.09 0.93 7.30 -39.35 -0.29 0.65 16 19 F -0.13 -1.44 17.26 2.25 0.04 -1.40 16 20 C -0.11 -1.19 9.40 -39.56 -0.37 -1.56 16 21 C -0.15 -1.96 5.40 -104.31 -0.56 -2.53 16 22 C 0.51 7.10 2.79 36.01 0.10 7.20 16 23 F -0.18 -2.31 16.00 2.25 0.04 -2.28 16 24 F -0.17 -2.31 13.38 2.25 0.03 -2.28 16 25 F -0.16 -2.67 15.97 2.25 0.04 -2.63 16 26 C -0.09 -1.69 9.30 -39.25 -0.37 -2.06 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.12 2.17 8.06 -52.48 -0.42 1.74 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.75 5.81 -52.49 -0.30 1.44 16 33 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.41 7.18 -52.49 -0.38 1.03 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -29.30 327.61 -7.80 -37.10 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.18 Total: -1.19 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -5.41 Total: -23.44 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 0.14 Total: -8.59 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.30 -7.80 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241126585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.618 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds