Wall clock time and date at job start Tue Mar 31 2020 14:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47182 * 270.00140 * 3 2 1 5 5 H 1.48492 * 109.46902 * 30.00513 * 3 2 1 6 6 H 1.48501 * 109.47073 * 150.00296 * 3 2 1 7 7 C 1.37881 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.93940 * 269.97543 * 10 9 7 12 12 C 1.38306 * 120.24834 * 180.02562 * 11 10 9 13 13 C 1.38036 * 120.11618 * 359.97438 * 12 11 10 14 14 C 1.39315 * 119.87908 * 0.02562 * 13 12 11 15 15 C 1.48388 * 120.12025 * 180.02562 * 14 13 12 16 16 C 1.39372 * 120.09505 * 238.29619 * 15 14 13 17 17 C 1.37957 * 119.90073 * 179.69846 * 16 15 14 18 18 C 1.38572 * 120.09099 * 0.58023 * 17 16 15 19 19 F 1.35103 * 119.89726 * 179.69701 * 18 17 16 20 20 C 1.38530 * 120.19618 * 359.71910 * 18 17 16 21 21 C 1.37989 * 120.09552 * 359.97438 * 20 18 17 22 22 C 1.50699 * 120.04837 * 180.02562 * 21 20 18 23 23 F 1.39896 * 109.46828 * 353.35051 * 22 21 20 24 24 F 1.39895 * 109.47239 * 113.35406 * 22 21 20 25 25 F 1.39904 * 109.47062 * 233.35417 * 22 21 20 26 26 C 1.37994 * 119.93926 * 90.00204 * 10 9 7 27 27 H 0.96997 * 120.00344 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46761 * 59.99567 * 9 7 2 29 29 H 1.09001 * 109.46801 * 300.00331 * 9 7 2 30 30 H 1.08007 * 119.87746 * 0.04526 * 11 10 9 31 31 H 1.07994 * 119.94036 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.06041 * 180.27279 * 13 12 11 33 33 H 1.07998 * 120.04779 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94827 * 180.27546 * 17 16 15 35 35 H 1.07996 * 119.94867 * 180.02562 * 20 18 17 36 36 H 1.07997 * 120.06223 * 359.95077 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6778 -4.1691 -1.2012 12 6 3.5761 -5.2207 -1.2098 13 6 4.0317 -5.7522 -0.0201 14 6 3.5846 -5.2278 1.1906 15 6 4.0712 -5.7947 2.4727 16 6 3.1652 -6.3125 3.3965 17 6 3.6226 -6.8442 4.5845 18 6 4.9796 -6.8530 4.8650 19 9 5.4227 -7.3692 6.0323 20 6 5.8831 -6.3337 3.9522 21 6 5.4348 -5.8057 2.7588 22 6 6.4187 -5.2416 1.7664 23 9 7.6968 -5.2252 2.3348 24 9 6.4298 -6.0382 0.6164 25 9 6.0426 -3.9375 1.4267 26 6 2.6789 -4.1686 1.1934 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.3244 -3.7558 -2.1344 31 1 3.9224 -5.6261 -2.1490 32 1 4.7366 -6.5704 -0.0279 33 1 2.1071 -6.3015 3.1808 34 1 2.9216 -7.2497 5.2990 35 1 6.9398 -6.3430 4.1747 36 1 2.3293 -3.7581 2.1292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241126585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:09 Heat of formation + Delta-G solvation = -162.049057 kcal Electronic energy + Delta-G solvation = -26958.801959 eV Core-core repulsion = 22485.527852 eV Total energy + Delta-G solvation = -4473.274107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.26567 -50.02033 -48.79711 -48.68897 -40.92942 -39.44914 -35.54879 -33.80166 -33.16992 -32.73606 -30.09109 -28.89065 -27.22450 -25.30917 -24.62323 -23.45259 -22.63168 -21.49264 -19.82223 -19.57590 -19.50929 -18.52410 -17.74815 -17.48171 -17.26549 -16.90978 -16.71892 -16.51085 -16.05735 -15.62322 -15.52699 -15.22420 -15.10699 -14.93354 -14.84662 -14.76838 -14.57641 -14.41574 -14.08039 -13.78774 -13.60776 -13.35178 -13.25136 -13.15188 -12.79731 -12.61596 -12.30089 -12.28638 -11.88842 -11.55298 -11.37304 -10.61014 -10.49880 -10.16605 -9.55516 -9.29990 -8.21372 -6.33622 -0.45437 -0.15246 0.52543 0.61266 1.38839 1.39022 1.50768 1.53879 2.16520 2.38658 2.55095 2.86438 2.91813 3.09927 3.18877 3.31570 3.40042 3.67969 3.85991 4.05444 4.12305 4.19425 4.32157 4.37610 4.58118 4.64803 4.75265 4.77795 4.91570 5.03192 5.11268 5.20840 5.35014 5.36873 5.54011 5.56153 5.63791 5.74908 6.04123 6.09071 6.22686 6.78718 7.34932 8.87981 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003852 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.504584 B = 7268.085855 C = 7491.641673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.050 0.950 9 C 0.058 3.942 10 C -0.063 4.063 11 C -0.124 4.124 12 C -0.113 4.113 13 C -0.130 4.130 14 C -0.076 4.076 15 C -0.003 4.003 16 C -0.079 4.079 17 C -0.104 4.104 18 C 0.092 3.908 19 F -0.133 7.133 20 C -0.105 4.105 21 C -0.158 4.158 22 C 0.510 3.490 23 F -0.175 7.175 24 F -0.169 7.169 25 F -0.181 7.181 26 C -0.103 4.103 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.287 -17.230 7.554 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.063 4.063 11 C -0.142 4.142 12 C -0.130 4.130 13 C -0.147 4.147 14 C -0.076 4.076 15 C -0.004 4.004 16 C -0.097 4.097 17 C -0.122 4.122 18 C 0.073 3.927 19 F -0.111 7.111 20 C -0.124 4.124 21 C -0.160 4.160 22 C 0.456 3.544 23 F -0.156 7.156 24 F -0.150 7.150 25 F -0.162 7.162 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.135 0.865 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.195 0.805 35 H 0.182 0.818 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.189 -17.119 7.576 21.809 hybrid contribution 0.306 1.340 -0.176 1.386 sum 11.494 -15.779 7.399 20.877 Atomic orbital electron populations 1.70055 1.07483 1.27917 1.51274 1.25831 0.95704 1.02784 0.94608 0.85537 0.78622 0.78875 0.78616 1.19636 1.20303 1.19405 1.21352 0.92922 0.91368 1.50963 0.93157 1.18095 0.92827 0.90882 0.96119 1.20318 0.97159 0.95183 0.93623 1.21277 0.98418 0.96987 0.97521 1.21275 0.96739 0.95984 0.99045 1.21732 1.00294 1.01470 0.91217 1.18695 0.99233 0.97343 0.92338 1.18673 0.91411 0.96187 0.94101 1.21357 1.00856 0.95799 0.91711 1.21613 0.94039 0.98495 0.98052 1.17557 0.92786 0.99450 0.82949 1.91540 1.90066 1.84447 1.45056 1.20944 1.02117 0.97652 0.91678 1.19751 0.92912 1.06958 0.96342 1.18217 0.79763 0.76010 0.80457 1.93160 1.41565 1.96340 1.84560 1.93137 1.96110 1.73639 1.52112 1.93277 1.91192 1.38770 1.92980 1.20969 0.97550 0.95949 0.97645 0.92533 0.97543 0.97522 0.86511 0.83346 0.83236 0.82162 0.80526 0.81790 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.52 5.46 84.66 0.46 0.99 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -30.19 9.09 25.60 0.23 -29.96 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.06 3.04 5.10 29.10 0.15 3.19 16 10 C -0.06 -2.72 5.06 -19.90 -0.10 -2.82 16 11 C -0.12 -4.70 9.69 22.31 0.22 -4.48 16 12 C -0.11 -3.44 10.03 22.24 0.22 -3.22 16 13 C -0.13 -3.78 7.76 22.48 0.17 -3.61 16 14 C -0.08 -2.37 3.96 -20.04 -0.08 -2.45 16 15 C 0.00 -0.08 5.35 -20.04 -0.11 -0.19 16 16 C -0.08 -1.57 9.65 22.48 0.22 -1.35 16 17 C -0.10 -1.63 10.01 22.28 0.22 -1.41 16 18 C 0.09 1.65 7.30 22.42 0.16 1.81 16 19 F -0.13 -2.39 17.26 44.97 0.78 -1.62 16 20 C -0.11 -2.05 9.40 22.28 0.21 -1.84 16 21 C -0.16 -3.78 5.40 -19.66 -0.11 -3.88 16 22 C 0.51 13.37 2.79 71.24 0.20 13.56 16 23 F -0.17 -4.16 16.00 44.97 0.72 -3.44 16 24 F -0.17 -4.26 13.38 44.97 0.60 -3.66 16 25 F -0.18 -5.95 15.97 44.97 0.72 -5.23 16 26 C -0.10 -3.91 9.30 22.48 0.21 -3.70 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 29 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 30 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.15 3.70 5.81 -2.91 -0.02 3.68 16 33 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.16 2.64 7.18 -2.91 -0.02 2.62 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -64.66 327.61 8.55 -56.11 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.13 Total: 5.75 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 2.28 Total: -39.36 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 9 Polarization: -16.76 SS G_CDS: 2.82 Total: -13.94 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -64.66 8.55 -56.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241126585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.939 kcal (2) G-P(sol) polarization free energy of solvation -64.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds