Wall clock time and date at job start Tue Mar 31 2020 13:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36005 * 117.00255 * 2 1 4 4 C 1.38724 * 119.97438 * 0.02562 * 3 2 1 5 5 C 1.38282 * 120.25072 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.19602 * 0.27619 * 5 4 3 7 7 F 1.35103 * 120.02294 * 179.70314 * 6 5 4 8 8 C 1.39590 * 119.94553 * 359.45125 * 6 5 4 9 9 C 1.48255 * 120.12160 * 180.28063 * 8 6 5 10 10 C 1.39304 * 120.13291 * 270.26647 * 9 8 6 11 11 C 1.37979 * 119.96616 * 180.02562 * 10 9 8 12 12 C 1.38670 * 120.24713 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.86504 * 179.97438 * 12 11 10 14 14 C 1.38340 * 120.27486 * 359.97438 * 12 11 10 15 15 C 1.38706 * 120.02448 * 359.72204 * 14 12 11 16 16 O 1.35664 * 120.12134 * 180.29975 * 15 14 12 17 17 C 1.34817 * 117.00221 * 354.39203 * 16 15 14 18 18 H 1.07998 * 119.99341 * 5.07583 * 17 16 15 19 19 C 1.38639 * 120.00094 * 185.06682 * 17 16 15 20 20 N 1.31563 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47395 * 89.99994 * 21 19 17 23 23 H 1.48498 * 109.47158 * 210.00186 * 21 19 17 24 24 H 1.48503 * 109.46985 * 330.00134 * 21 19 17 25 25 C 1.38665 * 119.97473 * 179.97438 * 3 2 1 26 26 F 1.35096 * 120.10043 * 0.02562 * 25 3 2 27 27 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47191 * 300.00381 * 1 2 3 29 29 H 1.09004 * 109.46708 * 59.99914 * 1 2 3 30 30 H 1.07997 * 119.87493 * 359.94910 * 4 3 2 31 31 H 1.08001 * 119.90136 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.01972 * 0.02776 * 10 9 8 33 33 H 1.08005 * 119.87671 * 180.02562 * 11 10 9 34 34 H 1.07993 * 119.98519 * 180.02562 * 14 12 11 35 35 H 0.96998 * 120.00107 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2905 2.3749 0.0005 5 6 1.9124 3.6100 0.0011 6 6 3.2921 3.6937 -0.0047 7 9 3.8960 4.9022 -0.0102 8 6 4.0609 2.5286 0.0005 9 6 5.5410 2.6138 0.0007 10 6 6.2392 2.6545 -1.2040 11 6 7.6167 2.7332 -1.1999 12 6 8.3106 2.7716 0.0001 13 9 9.6594 2.8483 -0.0048 14 6 7.6274 2.7318 1.2024 15 6 6.2423 2.6590 1.2114 16 8 5.5700 2.6260 2.3893 17 6 6.3092 2.5495 3.5141 18 1 7.3865 2.6001 3.4566 19 6 5.6865 2.4063 4.7445 20 7 4.3742 2.3443 4.8144 21 14 6.7109 2.3011 6.3031 22 1 6.9237 3.6658 6.8486 23 1 5.9990 1.4717 7.3082 24 1 8.0243 1.6823 5.9913 25 6 3.4313 1.2837 0.0005 26 9 4.1685 0.1516 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2121 2.3156 0.0001 31 1 1.3183 4.5119 0.0011 32 1 5.7026 2.6244 -2.1408 33 1 8.1566 2.7651 -2.1348 34 1 8.1724 2.7624 2.1342 35 1 3.9386 2.2437 5.6752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241141150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:49 Heat of formation + Delta-G solvation = -142.712997 kcal Electronic energy + Delta-G solvation = -27327.837756 eV Core-core repulsion = 22843.029334 eV Total energy + Delta-G solvation = -4484.808422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.43122 -48.36013 -48.34504 -39.80068 -39.12651 -37.09013 -36.25066 -32.45689 -31.88995 -29.87476 -29.43091 -28.03378 -27.12265 -25.51654 -23.20776 -22.32093 -21.93249 -20.89898 -18.35705 -18.22662 -17.53425 -17.30657 -17.19954 -16.09821 -15.67840 -15.45131 -15.29912 -15.13789 -15.02252 -14.95357 -14.61293 -14.56533 -14.28808 -14.04306 -13.60725 -13.44359 -13.32173 -12.86736 -12.56558 -12.25533 -11.99774 -11.92703 -11.74650 -11.50347 -11.24917 -10.91585 -10.85542 -10.79373 -10.66887 -10.51023 -9.68367 -8.96425 -8.56892 -8.17707 -7.85680 -7.47239 -6.57833 -4.17524 1.20774 1.34610 1.73914 2.10864 3.07614 3.08946 3.13859 3.20238 3.60071 3.86385 4.19818 4.28318 4.65066 4.75613 4.79241 4.92710 4.98997 5.06156 5.11883 5.14044 5.24240 5.41672 5.48687 5.61648 5.69227 5.99140 6.03612 6.12422 6.21282 6.27456 6.36854 6.58805 6.78272 6.79305 6.93659 6.95498 7.20361 7.38472 7.56292 7.84372 8.86041 9.48759 10.58271 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.006027 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.225864 B = 4644.297598 C = 6337.759057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.082 3.918 4 C -0.159 4.159 5 C -0.127 4.127 6 C 0.110 3.890 7 F -0.127 7.127 8 C -0.036 4.036 9 C -0.155 4.155 10 C -0.020 4.020 11 C -0.249 4.249 12 C 0.152 3.848 13 F -0.149 7.149 14 C -0.269 4.269 15 C 0.196 3.804 16 O -0.153 6.153 17 C -0.397 4.397 18 H 0.096 0.904 19 C 0.045 3.955 20 N -0.850 5.850 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.265 1.265 25 C 0.120 3.880 26 F -0.118 7.118 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -0.432 -9.647 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.036 3.964 4 C -0.178 4.178 5 C -0.146 4.146 6 C 0.091 3.909 7 F -0.106 7.106 8 C -0.038 4.038 9 C -0.157 4.157 10 C -0.038 4.038 11 C -0.269 4.269 12 C 0.133 3.867 13 F -0.128 7.128 14 C -0.290 4.290 15 C 0.140 3.860 16 O -0.054 6.054 17 C -0.473 4.473 18 H 0.113 0.887 19 C -0.161 4.161 20 N -0.483 5.483 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.189 1.189 25 C 0.100 3.900 26 F -0.097 7.097 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.059 -0.650 -9.367 11.747 hybrid contribution 0.780 0.131 0.954 1.240 sum -6.279 -0.518 -8.413 10.510 Atomic orbital electron populations 1.23083 0.78338 1.04012 1.01373 1.86149 1.21363 1.25609 1.89077 1.18784 0.90442 0.85659 1.01558 1.20816 1.00080 0.90547 1.06324 1.20783 0.92359 0.98676 1.02826 1.17288 0.89999 0.80018 1.03624 1.91503 1.83900 1.41417 1.93752 1.18264 0.93488 0.89995 1.02013 1.17368 0.89503 1.17272 0.91538 1.20450 0.92816 0.94806 0.95718 1.20412 0.94286 1.15998 0.96179 1.17523 0.75910 0.98945 0.94333 1.91424 1.30219 1.93598 1.97552 1.20966 0.94515 1.15717 0.97754 1.18877 0.89317 0.90949 0.86899 1.83985 1.34423 1.76334 1.10679 1.21410 0.91358 1.52644 0.81874 0.88712 1.25327 0.96253 0.95888 0.98626 1.70046 1.07987 1.43864 1.26402 0.85684 0.79191 0.78803 0.79674 1.19654 1.20063 1.18946 1.16623 0.85399 0.82294 1.05734 1.91510 1.76591 1.47905 1.93660 0.88192 0.92362 0.92650 0.83957 0.84057 0.85733 0.85849 0.83940 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.80 10.36 -19.76 -0.20 -5.00 16 3 C 0.08 1.38 6.69 -39.24 -0.26 1.12 16 4 C -0.16 -2.23 9.03 -39.39 -0.36 -2.58 16 5 C -0.13 -1.91 10.01 -39.57 -0.40 -2.30 16 6 C 0.11 2.06 7.27 -39.08 -0.28 1.77 16 7 F -0.13 -2.47 16.82 2.25 0.04 -2.43 16 8 C -0.04 -0.73 4.84 -104.80 -0.51 -1.24 16 9 C -0.16 -3.34 4.60 -104.72 -0.48 -3.83 16 10 C -0.02 -0.36 9.77 -39.28 -0.38 -0.74 16 11 C -0.25 -4.48 10.01 -39.52 -0.40 -4.88 16 12 C 0.15 3.05 7.29 -39.38 -0.29 2.77 16 13 F -0.15 -2.84 17.26 2.25 0.04 -2.80 16 14 C -0.27 -6.07 9.14 -39.37 -0.36 -6.43 16 15 C 0.20 4.79 6.65 -38.75 -0.26 4.54 16 16 O -0.15 -4.31 9.21 0.35 0.00 -4.30 16 17 C -0.40 -10.95 9.49 30.88 0.29 -10.66 16 18 H 0.10 2.43 5.21 -52.49 -0.27 2.16 16 19 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 20 N -0.85 -24.29 13.67 55.48 0.76 -23.54 16 21 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 C 0.12 2.39 7.29 -38.95 -0.28 2.11 16 26 F -0.12 -2.54 16.66 2.25 0.04 -2.50 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.14 1.43 6.28 -52.49 -0.33 1.10 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.14 3.19 5.64 -52.49 -0.30 2.90 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -31.59 325.29 -5.04 -36.63 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -2.52 Total: 1.79 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.07 Total: -17.97 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.76 Total: -23.54 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.20 Total: -9.31 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.11 Total: -7.74 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.59 -5.04 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241141150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.087 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds