Wall clock time and date at job start Tue Mar 31 2020 13:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36005 * 117.00255 * 2 1 4 4 C 1.38724 * 119.97438 * 0.02562 * 3 2 1 5 5 C 1.38282 * 120.25072 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.19602 * 0.27619 * 5 4 3 7 7 F 1.35103 * 120.02294 * 179.70314 * 6 5 4 8 8 C 1.39590 * 119.94553 * 359.45125 * 6 5 4 9 9 C 1.48255 * 120.12160 * 180.28063 * 8 6 5 10 10 C 1.39304 * 120.13291 * 270.26647 * 9 8 6 11 11 C 1.37979 * 119.96616 * 180.02562 * 10 9 8 12 12 C 1.38670 * 120.24713 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.86504 * 179.97438 * 12 11 10 14 14 C 1.38340 * 120.27486 * 359.97438 * 12 11 10 15 15 C 1.38706 * 120.02448 * 359.72204 * 14 12 11 16 16 O 1.35664 * 120.12134 * 180.29975 * 15 14 12 17 17 C 1.34817 * 117.00221 * 354.39203 * 16 15 14 18 18 H 1.07998 * 119.99341 * 5.07583 * 17 16 15 19 19 C 1.38639 * 120.00094 * 185.06682 * 17 16 15 20 20 N 1.31563 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47395 * 89.99994 * 21 19 17 23 23 H 1.48498 * 109.47158 * 210.00186 * 21 19 17 24 24 H 1.48503 * 109.46985 * 330.00134 * 21 19 17 25 25 C 1.38665 * 119.97473 * 179.97438 * 3 2 1 26 26 F 1.35096 * 120.10043 * 0.02562 * 25 3 2 27 27 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47191 * 300.00381 * 1 2 3 29 29 H 1.09004 * 109.46708 * 59.99914 * 1 2 3 30 30 H 1.07997 * 119.87493 * 359.94910 * 4 3 2 31 31 H 1.08001 * 119.90136 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.01972 * 0.02776 * 10 9 8 33 33 H 1.08005 * 119.87671 * 180.02562 * 11 10 9 34 34 H 1.07993 * 119.98519 * 180.02562 * 14 12 11 35 35 H 0.96998 * 120.00107 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2905 2.3749 0.0005 5 6 1.9124 3.6100 0.0011 6 6 3.2921 3.6937 -0.0047 7 9 3.8960 4.9022 -0.0102 8 6 4.0609 2.5286 0.0005 9 6 5.5410 2.6138 0.0007 10 6 6.2392 2.6545 -1.2040 11 6 7.6167 2.7332 -1.1999 12 6 8.3106 2.7716 0.0001 13 9 9.6594 2.8483 -0.0048 14 6 7.6274 2.7318 1.2024 15 6 6.2423 2.6590 1.2114 16 8 5.5700 2.6260 2.3893 17 6 6.3092 2.5495 3.5141 18 1 7.3865 2.6001 3.4566 19 6 5.6865 2.4063 4.7445 20 7 4.3742 2.3443 4.8144 21 14 6.7109 2.3011 6.3031 22 1 6.9237 3.6658 6.8486 23 1 5.9990 1.4717 7.3082 24 1 8.0243 1.6823 5.9913 25 6 3.4313 1.2837 0.0005 26 9 4.1685 0.1516 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2121 2.3156 0.0001 31 1 1.3183 4.5119 0.0011 32 1 5.7026 2.6244 -2.1408 33 1 8.1566 2.7651 -2.1348 34 1 8.1724 2.7624 2.1342 35 1 3.9386 2.2437 5.6752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241141150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:48 Heat of formation + Delta-G solvation = -161.357833 kcal Electronic energy + Delta-G solvation = -27328.646257 eV Core-core repulsion = 22843.029334 eV Total energy + Delta-G solvation = -4485.616923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.93951 -49.89911 -49.86445 -41.16053 -40.70104 -38.54324 -37.80334 -34.39728 -33.35738 -31.20815 -31.00061 -29.53747 -28.07671 -27.45673 -24.64093 -23.70959 -23.59467 -22.38259 -20.18734 -19.64256 -19.12046 -18.69801 -18.55069 -17.52587 -17.19340 -16.96955 -16.91036 -16.67697 -16.54415 -16.36415 -16.02465 -15.99496 -15.70463 -15.47276 -15.39564 -15.19785 -14.91508 -14.17030 -13.92369 -13.78654 -13.47405 -13.40241 -13.06964 -12.92632 -12.71372 -12.44459 -12.40689 -12.17910 -12.14552 -11.83026 -11.57631 -10.87974 -9.94014 -9.83188 -9.21554 -9.15240 -8.54834 -6.24232 -0.11877 0.01197 0.09075 0.44850 1.31662 1.40269 1.48551 2.09402 2.10834 2.31033 2.53898 2.96732 2.97716 3.14050 3.31721 3.37694 3.52006 3.76698 3.90247 3.92252 4.12467 4.27112 4.37127 4.42189 4.44926 4.70903 4.74490 4.79467 4.88251 4.89362 4.95781 4.98785 5.09289 5.17145 5.26176 5.40690 5.56808 5.89276 5.93836 6.25020 6.87775 7.59431 8.66098 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.006027 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.225864 B = 4644.297598 C = 6337.759057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.086 3.914 4 C -0.143 4.143 5 C -0.109 4.109 6 C 0.082 3.918 7 F -0.139 7.139 8 C -0.061 4.061 9 C -0.159 4.159 10 C -0.018 4.018 11 C -0.219 4.219 12 C 0.146 3.854 13 F -0.141 7.141 14 C -0.284 4.284 15 C 0.164 3.836 16 O -0.200 6.200 17 C -0.424 4.424 18 H 0.099 0.901 19 C -0.010 4.010 20 N -0.903 5.903 21 Si 1.015 2.985 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.257 1.257 25 C 0.078 3.922 26 F -0.140 7.140 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.192 0.808 31 H 0.181 0.819 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -0.099 -11.408 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.246 6.246 3 C 0.039 3.961 4 C -0.161 4.161 5 C -0.128 4.128 6 C 0.062 3.938 7 F -0.118 7.118 8 C -0.063 4.063 9 C -0.160 4.160 10 C -0.036 4.036 11 C -0.238 4.238 12 C 0.127 3.873 13 F -0.120 7.120 14 C -0.305 4.305 15 C 0.111 3.889 16 O -0.104 6.104 17 C -0.500 4.500 18 H 0.117 0.883 19 C -0.210 4.210 20 N -0.539 5.539 21 Si 0.834 3.166 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.181 1.181 25 C 0.058 3.942 26 F -0.119 7.119 27 H 0.139 0.861 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.209 0.791 31 H 0.199 0.801 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.150 0.850 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.164 -0.315 -11.184 13.850 hybrid contribution 1.085 -0.004 1.165 1.592 sum -7.079 -0.319 -10.019 12.272 Atomic orbital electron populations 1.23535 0.75187 1.06194 1.03185 1.86136 1.24616 1.25203 1.88681 1.18945 0.89608 0.87275 1.00260 1.21358 1.02197 0.88865 1.03663 1.21273 0.90938 1.00688 0.99898 1.17617 0.91491 0.79113 1.05549 1.91462 1.84384 1.41859 1.94084 1.18379 0.93108 0.91065 1.03732 1.17873 0.90950 1.15605 0.91582 1.20973 0.93214 0.93239 0.96140 1.20947 0.94224 1.11655 0.96947 1.17592 0.76333 0.99191 0.94231 1.91443 1.29514 1.93520 1.97506 1.21026 0.94235 1.16503 0.98693 1.19430 0.90362 0.91987 0.87155 1.83966 1.35386 1.79457 1.11570 1.21826 0.91864 1.53586 0.82687 0.88323 1.26517 0.97545 0.95165 1.01772 1.70169 1.09882 1.46563 1.27323 0.84649 0.77614 0.79323 0.75047 1.18505 1.19156 1.18060 1.16995 0.86961 0.81629 1.08649 1.91433 1.77360 1.48878 1.94202 0.86143 0.91359 0.89786 0.79062 0.80143 0.81853 0.81444 0.84999 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -9.93 10.36 -93.61 -0.97 -10.90 16 3 C 0.09 2.83 6.69 22.49 0.15 2.98 16 4 C -0.14 -3.57 9.03 22.40 0.20 -3.37 16 5 C -0.11 -3.02 10.01 22.28 0.22 -2.80 16 6 C 0.08 3.04 7.27 22.59 0.16 3.21 16 7 F -0.14 -5.47 16.82 44.97 0.76 -4.71 16 8 C -0.06 -2.55 4.84 -19.98 -0.10 -2.65 16 9 C -0.16 -7.00 4.60 -19.93 -0.09 -7.10 16 10 C -0.02 -0.63 9.77 22.46 0.22 -0.41 16 11 C -0.22 -7.30 10.01 22.31 0.22 -7.08 16 12 C 0.15 5.75 7.29 22.40 0.16 5.91 16 13 F -0.14 -5.19 17.26 44.97 0.78 -4.41 16 14 C -0.28 -13.32 9.14 22.41 0.20 -13.12 16 15 C 0.16 8.43 6.65 22.81 0.15 8.58 16 16 O -0.20 -12.00 9.21 -21.66 -0.20 -12.20 16 17 C -0.42 -24.87 9.49 67.92 0.64 -24.22 16 18 H 0.10 5.41 5.21 -2.91 -0.02 5.39 16 19 C -0.01 -0.57 5.49 84.83 0.47 -0.11 16 20 N -0.90 -54.32 13.67 21.61 0.30 -54.02 16 21 Si 1.01 42.96 29.55 68.60 2.03 44.99 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 C 0.08 3.19 7.29 22.68 0.17 3.36 16 26 F -0.14 -6.34 16.66 44.97 0.75 -5.59 16 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 29 H 0.08 0.91 7.66 -2.38 -0.02 0.89 16 30 H 0.19 2.83 6.28 -2.91 -0.02 2.81 16 31 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.13 6.30 5.64 -2.91 -0.02 6.28 16 35 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -76.07 325.29 8.51 -67.55 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.17 Total: 14.79 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.90 Total: -35.49 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.30 Total: -54.02 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.17 Total: -23.10 kcal Atomic # 9 Polarization: -17.00 SS G_CDS: 2.28 Total: -14.71 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.07 8.51 -67.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241141150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.804 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds