Wall clock time and date at job start Tue Mar 31 2020 14:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48497 * 109.46772 * 239.99503 * 3 2 1 5 5 H 1.48499 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47278 * 119.99875 * 3 2 1 7 7 C 1.37878 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93685 * 270.25512 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25973 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39335 * 120.13202 * 129.99880 * 15 14 13 17 17 C 1.37999 * 119.90018 * 179.97438 * 16 15 14 18 18 C 1.38358 * 120.17526 * 359.97438 * 17 16 15 19 19 C 1.38254 * 120.26984 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.95021 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47166 * 0.02562 * 20 19 18 22 22 F 1.39896 * 109.46907 * 120.00541 * 20 19 18 23 23 F 1.39903 * 109.46850 * 240.00390 * 20 19 18 24 24 C 1.38280 * 120.09598 * 359.79075 * 19 18 17 25 25 F 1.35096 * 120.08970 * 180.23186 * 24 19 18 26 26 C 1.37996 * 119.93660 * 89.99417 * 10 9 7 27 27 H 0.97002 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47342 * 59.99892 * 9 7 2 29 29 H 1.08994 * 109.46765 * 299.99136 * 9 7 2 30 30 H 1.08003 * 119.88208 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 33 33 H 1.07996 * 120.05061 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.91012 * 180.02562 * 17 16 15 35 35 H 1.08004 * 119.86666 * 180.02562 * 18 17 16 36 36 H 1.07993 * 120.06353 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6829 -4.1660 -1.1983 12 6 3.5774 -5.2207 -1.2057 13 6 4.0318 -5.7521 -0.0155 14 6 3.5834 -5.2275 1.1948 15 6 4.0687 -5.7940 2.4774 16 6 4.5636 -4.9521 3.4711 17 6 5.0132 -5.4841 4.6624 18 6 4.9732 -6.8511 4.8727 19 6 4.4826 -7.6929 3.8919 20 6 4.4418 -9.1807 4.1287 21 9 4.9483 -9.4643 5.4016 22 9 3.1199 -9.6305 4.0424 23 9 5.2188 -9.8282 3.1622 24 6 4.0247 -7.1714 2.6959 25 9 3.5409 -7.9938 1.7394 26 6 2.6778 -4.1681 1.1964 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.3329 -3.7509 -2.1319 31 1 3.9247 -5.6264 -2.1445 32 1 4.7339 -6.5728 -0.0225 33 1 4.5946 -3.8847 3.3097 34 1 5.3965 -4.8317 5.4330 35 1 5.3260 -7.2621 5.8071 36 1 2.3273 -3.7573 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241157575.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:20 Heat of formation + Delta-G solvation = -158.354759 kcal Electronic energy + Delta-G solvation = -26260.907640 eV Core-core repulsion = 21787.793730 eV Total energy + Delta-G solvation = -4473.113910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.42830 -49.16215 -47.88939 -47.81941 -39.71510 -38.34627 -33.85145 -32.89082 -31.66508 -31.11014 -29.06493 -27.12427 -26.29528 -23.72244 -23.36964 -22.49905 -21.27543 -20.22130 -18.77664 -18.71893 -18.38827 -17.47962 -16.44210 -16.37858 -16.13755 -15.81939 -15.25542 -14.91628 -14.68766 -14.67107 -14.50483 -14.42186 -14.27532 -13.99536 -13.99073 -13.48589 -13.36638 -12.98770 -12.79963 -12.59943 -12.47327 -12.16246 -11.82541 -11.55121 -11.37831 -11.16601 -10.83710 -10.59547 -10.40243 -9.72167 -9.65243 -9.48303 -9.16996 -8.48763 -8.21094 -7.89429 -6.10813 -4.15420 0.49787 0.68057 1.84407 1.99525 2.36598 3.10490 3.26762 3.31798 3.34173 3.39722 3.62762 3.89357 4.15212 4.25660 4.41140 4.43467 4.67160 4.71993 4.89509 5.22392 5.25535 5.38839 5.45414 5.54107 5.60214 5.81544 5.88244 5.96080 5.99499 6.17253 6.33907 6.47646 6.61918 6.89293 7.01588 7.06279 7.41030 7.57280 7.73499 7.84410 8.23414 8.89509 9.48803 10.99039 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002984 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.356947 B = 9381.212918 C =10026.228732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.034 4.034 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.074 4.074 15 C -0.058 4.058 16 C -0.048 4.048 17 C -0.128 4.128 18 C -0.055 4.055 19 C -0.225 4.225 20 C 0.514 3.486 21 F -0.175 7.175 22 F -0.173 7.173 23 F -0.174 7.174 24 C 0.155 3.845 25 F -0.118 7.118 26 C -0.099 4.099 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.651 -15.472 9.040 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.034 4.034 11 C -0.128 4.128 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.074 4.074 15 C -0.059 4.059 16 C -0.066 4.066 17 C -0.146 4.146 18 C -0.073 4.073 19 C -0.227 4.227 20 C 0.460 3.540 21 F -0.157 7.157 22 F -0.154 7.154 23 F -0.155 7.155 24 C 0.135 3.865 25 F -0.096 7.096 26 C -0.117 4.117 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.463 -15.435 9.003 20.707 hybrid contribution 0.358 0.508 -0.155 0.641 sum 10.822 -14.927 8.848 20.450 Atomic orbital electron populations 1.69946 1.06052 1.27042 1.50110 1.25012 0.94881 0.99274 0.95080 0.86590 0.79537 0.82781 0.78742 1.20139 1.21200 1.20149 1.20999 0.92985 0.89804 1.51512 0.92480 1.18370 0.92511 0.89474 0.98562 1.20647 0.96072 0.95059 0.91595 1.21241 0.97256 0.95792 0.98555 1.20974 0.98420 0.97361 0.97232 1.20879 1.01112 1.00321 0.91741 1.18407 1.00157 0.98454 0.90344 1.18949 1.00807 0.90106 0.96069 1.21563 0.92797 1.00942 0.91313 1.21182 1.01016 0.94402 0.97980 1.20923 0.95376 0.93341 0.97625 1.19954 1.12777 0.92182 0.97796 1.18029 0.74123 0.87790 0.74040 1.93160 1.87362 1.94631 1.40512 1.93244 1.35530 1.90752 1.95850 1.93235 1.75155 1.83606 1.63499 1.17299 0.96151 0.87948 0.85113 1.91572 1.84846 1.71253 1.61958 1.21085 0.96890 0.94894 0.98813 0.92696 0.95152 0.95227 0.86085 0.86554 0.87048 0.83380 0.83876 0.83644 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.86 9.09 -34.44 -0.31 -14.17 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 10 C -0.03 -0.70 5.06 -104.67 -0.53 -1.23 16 11 C -0.11 -2.06 9.69 -39.52 -0.38 -2.44 16 12 C -0.12 -1.96 10.03 -39.63 -0.40 -2.36 16 13 C -0.12 -1.94 8.87 -39.25 -0.35 -2.29 16 14 C -0.07 -1.20 5.31 -104.90 -0.56 -1.76 16 15 C -0.06 -0.81 5.48 -104.84 -0.57 -1.38 16 16 C -0.05 -0.55 9.51 -39.26 -0.37 -0.92 16 17 C -0.13 -1.13 10.03 -39.62 -0.40 -1.53 16 18 C -0.05 -0.50 9.43 -39.53 -0.37 -0.87 16 19 C -0.22 -2.62 5.37 -104.60 -0.56 -3.18 16 20 C 0.51 5.96 3.03 36.01 0.11 6.07 16 21 F -0.18 -1.80 15.96 2.25 0.04 -1.76 16 22 F -0.17 -2.19 17.04 2.25 0.04 -2.15 16 23 F -0.17 -2.13 17.06 2.25 0.04 -2.09 16 24 C 0.15 2.11 6.99 -39.08 -0.27 1.83 16 25 F -0.12 -1.76 15.11 2.25 0.03 -1.73 16 26 C -0.10 -1.83 9.16 -39.25 -0.36 -2.19 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.57 7.81 -52.49 -0.41 1.16 16 33 H 0.15 1.58 8.04 -52.49 -0.42 1.15 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 0.98 7.14 -52.48 -0.37 0.61 16 36 H 0.12 2.17 8.04 -52.49 -0.42 1.75 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -29.15 334.38 -7.96 -37.10 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.28 Total: -1.41 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -5.58 Total: -23.86 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.97 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.15 Total: -7.74 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.15 -7.96 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157575.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.252 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds