Wall clock time and date at job start Tue Mar 31 2020 14:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48497 * 109.46772 * 239.99503 * 3 2 1 5 5 H 1.48499 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47278 * 119.99875 * 3 2 1 7 7 C 1.37878 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93685 * 270.25512 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25973 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39335 * 120.13202 * 129.99880 * 15 14 13 17 17 C 1.37999 * 119.90018 * 179.97438 * 16 15 14 18 18 C 1.38358 * 120.17526 * 359.97438 * 17 16 15 19 19 C 1.38254 * 120.26984 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.95021 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47166 * 0.02562 * 20 19 18 22 22 F 1.39896 * 109.46907 * 120.00541 * 20 19 18 23 23 F 1.39903 * 109.46850 * 240.00390 * 20 19 18 24 24 C 1.38280 * 120.09598 * 359.79075 * 19 18 17 25 25 F 1.35096 * 120.08970 * 180.23186 * 24 19 18 26 26 C 1.37996 * 119.93660 * 89.99417 * 10 9 7 27 27 H 0.97002 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47342 * 59.99892 * 9 7 2 29 29 H 1.08994 * 109.46765 * 299.99136 * 9 7 2 30 30 H 1.08003 * 119.88208 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 32 32 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 33 33 H 1.07996 * 120.05061 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.91012 * 180.02562 * 17 16 15 35 35 H 1.08004 * 119.86666 * 180.02562 * 18 17 16 36 36 H 1.07993 * 120.06353 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6829 -4.1660 -1.1983 12 6 3.5774 -5.2207 -1.2057 13 6 4.0318 -5.7521 -0.0155 14 6 3.5834 -5.2275 1.1948 15 6 4.0687 -5.7940 2.4774 16 6 4.5636 -4.9521 3.4711 17 6 5.0132 -5.4841 4.6624 18 6 4.9732 -6.8511 4.8727 19 6 4.4826 -7.6929 3.8919 20 6 4.4418 -9.1807 4.1287 21 9 4.9483 -9.4643 5.4016 22 9 3.1199 -9.6305 4.0424 23 9 5.2188 -9.8282 3.1622 24 6 4.0247 -7.1714 2.6959 25 9 3.5409 -7.9938 1.7394 26 6 2.6778 -4.1681 1.1964 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.3329 -3.7509 -2.1319 31 1 3.9247 -5.6264 -2.1445 32 1 4.7339 -6.5728 -0.0225 33 1 4.5946 -3.8847 3.3097 34 1 5.3965 -4.8317 5.4330 35 1 5.3260 -7.2621 5.8071 36 1 2.3273 -3.7573 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241157575.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:20 Heat of formation + Delta-G solvation = -170.513517 kcal Electronic energy + Delta-G solvation = -26261.434883 eV Core-core repulsion = 21787.793730 eV Total energy + Delta-G solvation = -4473.641153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.33479 -50.19567 -48.76647 -48.75812 -40.78421 -39.55422 -35.60579 -34.20363 -32.99899 -32.35375 -30.26582 -28.89824 -27.20435 -25.30389 -24.73438 -23.48273 -22.50041 -21.58305 -19.69545 -19.63285 -19.35958 -18.50288 -18.39998 -17.50346 -17.35054 -16.92442 -16.57329 -16.19677 -15.92098 -15.80107 -15.60593 -15.51651 -15.17844 -14.91886 -14.90879 -14.59888 -14.55617 -14.37279 -14.15395 -13.91417 -13.69475 -13.35870 -13.27323 -13.02407 -12.81404 -12.57011 -12.53386 -12.29099 -11.87897 -11.59218 -11.39602 -10.62079 -10.58681 -10.12319 -9.58925 -9.28396 -8.20118 -6.33638 -0.38985 -0.26866 0.56733 0.59259 1.41451 1.43709 1.47173 1.52087 2.22863 2.40416 2.50523 2.70878 2.93189 3.01593 3.11205 3.24985 3.40186 3.79392 3.88431 4.06315 4.11083 4.15485 4.32988 4.37413 4.56261 4.69219 4.75410 4.78942 4.96109 5.07196 5.14820 5.22039 5.32838 5.35438 5.50972 5.56750 5.62609 5.74286 6.01232 6.06869 6.20655 6.78853 7.35251 8.89359 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002984 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.356947 B = 9381.212918 C =10026.228732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.057 3.943 10 C -0.062 4.062 11 C -0.126 4.126 12 C -0.111 4.111 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.083 4.083 16 C -0.051 4.051 17 C -0.110 4.110 18 C -0.040 4.040 19 C -0.230 4.230 20 C 0.516 3.484 21 F -0.165 7.165 22 F -0.182 7.182 23 F -0.179 7.179 24 C 0.137 3.863 25 F -0.133 7.133 26 C -0.110 4.110 27 H 0.265 0.735 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 -15.869 10.685 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.062 4.062 11 C -0.145 4.145 12 C -0.129 4.129 13 C -0.139 4.139 14 C -0.064 4.064 15 C -0.084 4.084 16 C -0.069 4.069 17 C -0.128 4.128 18 C -0.057 4.057 19 C -0.233 4.233 20 C 0.462 3.538 21 F -0.146 7.146 22 F -0.163 7.163 23 F -0.161 7.161 24 C 0.117 3.883 25 F -0.111 7.111 26 C -0.128 4.128 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.136 0.864 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.184 -15.846 10.650 23.202 hybrid contribution -0.438 0.517 -0.568 0.884 sum 12.746 -15.329 10.082 22.340 Atomic orbital electron populations 1.70081 1.07754 1.28046 1.51175 1.25932 0.95722 1.03135 0.94532 0.85492 0.78274 0.78001 0.79268 1.19359 1.20811 1.18907 1.21331 0.93149 0.90998 1.51136 0.92438 1.18102 0.92836 0.91145 0.95917 1.20346 0.97004 0.95209 0.93606 1.21270 0.98486 0.97085 0.97615 1.21272 0.96842 0.95857 0.98935 1.21238 1.00827 1.00394 0.91446 1.18592 0.98587 0.97021 0.92169 1.18878 1.03020 0.90614 0.95851 1.21742 0.92539 1.00944 0.91685 1.21591 0.98971 0.94713 0.97494 1.21378 0.93262 0.93251 0.97850 1.20076 1.13073 0.92420 0.97697 1.18028 0.73702 0.87799 0.74280 1.93178 1.87151 1.94579 1.39712 1.93227 1.36304 1.90881 1.95926 1.93224 1.75233 1.83753 1.63856 1.17450 0.97339 0.87733 0.85770 1.91528 1.85307 1.71619 1.62675 1.21031 0.97858 0.96113 0.97807 0.92571 0.97833 0.97821 0.86371 0.83209 0.84833 0.83067 0.79975 0.80472 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.53 -29.42 9.09 25.60 0.23 -29.18 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.06 3.01 5.10 29.10 0.15 3.15 16 10 C -0.06 -2.68 5.06 -19.90 -0.10 -2.78 16 11 C -0.13 -4.83 9.69 22.31 0.22 -4.61 16 12 C -0.11 -3.46 10.03 22.24 0.22 -3.24 16 13 C -0.12 -3.68 8.87 22.48 0.20 -3.48 16 14 C -0.06 -2.06 5.31 -20.04 -0.11 -2.16 16 15 C -0.08 -2.19 5.48 -20.00 -0.11 -2.30 16 16 C -0.05 -1.04 9.51 22.48 0.21 -0.83 16 17 C -0.11 -1.49 10.03 22.24 0.22 -1.27 16 18 C -0.04 -0.57 9.43 22.30 0.21 -0.36 16 19 C -0.23 -4.82 5.37 -19.85 -0.11 -4.93 16 20 C 0.52 10.96 3.03 71.24 0.22 11.18 16 21 F -0.16 -2.92 15.96 44.97 0.72 -2.20 16 22 F -0.18 -4.43 17.04 44.97 0.77 -3.66 16 23 F -0.18 -4.14 17.06 44.97 0.77 -3.37 16 24 C 0.14 3.55 6.99 22.59 0.16 3.70 16 25 F -0.13 -3.90 15.11 44.97 0.68 -3.22 16 26 C -0.11 -4.21 9.16 22.49 0.21 -4.00 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.00 0.19 8.09 -2.39 -0.02 0.17 16 29 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 30 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.13 3.48 7.81 -2.91 -0.02 3.45 16 33 H 0.15 2.96 8.04 -2.91 -0.02 2.93 16 34 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.18 1.46 7.14 -2.91 -0.02 1.44 16 36 H 0.12 4.43 8.04 -2.91 -0.02 4.41 16 Total: -1.00 -65.68 334.38 8.66 -57.02 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.13 Total: 5.77 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.29 Total: -40.37 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.28 Total: -55.06 kcal Atomic # 9 Polarization: -15.38 SS G_CDS: 2.93 Total: -12.45 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.68 8.66 -57.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157575.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.491 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds